Wall clock time and date at job start Tue Mar 31 2020 11:49:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42890 * 1 3 3 C 1.42901 * 114.00024 * 2 1 4 4 C 1.53005 * 109.47361 * 180.02562 * 3 2 1 5 5 N 1.46496 * 109.47434 * 64.99571 * 4 3 2 6 6 C 1.36875 * 120.00041 * 45.32626 * 5 4 3 7 7 H 1.08007 * 119.99191 * 36.53706 * 6 5 4 8 8 C 1.39039 * 120.00271 * 216.80896 * 6 5 4 9 9 N 1.31358 * 120.00206 * 21.09032 * 8 6 5 10 10 Si 1.86805 * 119.99978 * 201.09372 * 8 6 5 11 11 H 1.48493 * 109.47259 * 90.00043 * 10 8 6 12 12 H 1.48507 * 109.46875 * 210.00193 * 10 8 6 13 13 H 1.48497 * 109.47168 * 329.99663 * 10 8 6 14 14 C 1.34774 * 120.00294 * 225.33450 * 5 4 3 15 15 O 1.21590 * 120.00312 * 183.68687 * 14 5 4 16 16 C 1.47730 * 119.99628 * 3.68157 * 14 5 4 17 17 C 1.40092 * 120.56408 * 224.43771 * 16 14 5 18 18 C 1.38336 * 118.28234 * 179.97438 * 17 16 14 19 19 C 1.38364 * 119.30819 * 359.97438 * 18 17 16 20 20 C 1.50705 * 119.44881 * 179.97438 * 19 18 17 21 21 F 1.39900 * 109.47104 * 90.00053 * 20 19 18 22 22 F 1.39904 * 109.47003 * 210.00082 * 20 19 18 23 23 F 1.39902 * 109.47217 * 329.99721 * 20 19 18 24 24 N 1.31936 * 121.10055 * 0.02562 * 19 18 17 25 25 C 1.31684 * 121.87830 * 359.72253 * 24 19 18 26 26 H 1.09001 * 109.47350 * 300.00413 * 1 2 3 27 27 H 1.09005 * 109.47338 * 60.00052 * 1 2 3 28 28 H 1.09001 * 109.47445 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47465 * 59.99630 * 3 2 1 30 30 H 1.09007 * 109.46955 * 299.99846 * 3 2 1 31 31 H 1.09006 * 109.46567 * 304.99634 * 4 3 2 32 32 H 1.09000 * 109.47190 * 184.99700 * 4 3 2 33 33 H 0.96997 * 120.00429 * 184.93968 * 9 8 6 34 34 H 1.07999 * 120.85796 * 359.97438 * 17 16 14 35 35 H 1.07999 * 120.34054 * 179.97438 * 18 17 16 36 36 H 1.08002 * 119.71929 * 180.26933 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9757 0.5644 -1.2526 6 6 3.4489 0.9812 -2.4452 7 1 3.2179 2.0252 -2.5979 8 6 3.2060 0.0600 -3.4579 9 7 3.0781 -1.2151 -3.1691 10 14 3.0615 0.6355 -5.2292 11 1 4.4016 0.6112 -5.8684 12 1 2.1434 -0.2670 -5.9695 13 1 2.5244 2.0196 -5.2577 14 6 4.8994 -0.4168 -1.2303 15 8 5.3141 -0.8853 -2.2728 16 6 5.4080 -0.9230 0.0610 17 6 6.7787 -1.1422 0.2502 18 6 7.2032 -1.6165 1.4784 19 6 6.2699 -1.8564 2.4713 20 6 6.7289 -2.3736 3.8103 21 9 7.0106 -1.2948 4.6553 22 9 5.7197 -3.1592 4.3776 23 9 7.8823 -3.1471 3.6411 24 7 4.9847 -1.6408 2.2650 25 6 4.5317 -1.1854 1.1154 26 1 -0.3634 0.5139 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 1.6885 1.8464 0.8899 30 1 1.6885 1.8464 -0.8901 31 1 3.8514 0.5683 0.8410 32 1 3.9785 2.1766 0.0889 33 1 2.9803 -1.8663 -3.8812 34 1 7.4856 -0.9459 -0.5423 35 1 8.2523 -1.7975 1.6603 36 1 3.4727 -1.0174 0.9860 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457180820.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:49:20 Heat of formation + Delta-G solvation = -180.468533 kcal Electronic energy + Delta-G solvation = -27410.439348 eV Core-core repulsion = 22866.745085 eV Total energy + Delta-G solvation = -4543.694263 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.098 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -51.21614 -48.73754 -48.67557 -41.78471 -39.91858 -38.49919 -36.13254 -34.40471 -33.66467 -33.01040 -30.41451 -28.51601 -27.11159 -26.51855 -25.11081 -24.12271 -23.18590 -21.62186 -19.80343 -19.60981 -19.58360 -18.96642 -18.01146 -17.66377 -17.13356 -16.87165 -16.28593 -16.08744 -15.99934 -15.65793 -15.57218 -15.44133 -15.32843 -15.11220 -14.90068 -14.83496 -14.82001 -14.73751 -14.34172 -13.99144 -13.54363 -13.40351 -13.08740 -12.90536 -12.78657 -12.54898 -12.44721 -12.03458 -11.81041 -11.13118 -11.05029 -10.86655 -10.49576 -10.28874 -10.08391 -9.17190 -8.17567 -5.91131 -0.60840 -0.00870 1.36726 1.41504 1.48856 1.53124 2.01014 2.35197 2.42733 2.62547 2.82623 2.95555 3.08292 3.29207 3.33147 3.55765 3.72716 3.79857 3.93858 4.04883 4.25679 4.40035 4.45031 4.54033 4.64961 4.65356 4.74326 4.79113 4.92561 5.01082 5.07498 5.28449 5.46987 6.11464 6.43261 6.49445 6.95290 7.14016 7.59376 8.25045 8.87128 Molecular weight = 318.10amu Principal moments of inertia in cm(-1) A = 0.018219 B = 0.004253 C = 0.003728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1536.448382 B = 6581.477651 C = 7508.466331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.405 6.405 3 C 0.064 3.936 4 C 0.077 3.923 5 N -0.436 5.436 6 C -0.343 4.343 7 H 0.092 0.908 8 C 0.023 3.977 9 N -0.840 5.840 10 Si 0.961 3.039 11 H -0.291 1.291 12 H -0.289 1.289 13 H -0.251 1.251 14 C 0.486 3.514 15 O -0.577 6.577 16 C -0.124 4.124 17 C -0.043 4.043 18 C -0.106 4.106 19 C 0.017 3.983 20 C 0.535 3.465 21 F -0.169 7.169 22 F -0.172 7.172 23 F -0.163 7.163 24 N -0.457 5.457 25 C 0.121 3.879 26 H 0.060 0.940 27 H 0.032 0.968 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.049 0.951 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.257 0.743 34 H 0.160 0.840 35 H 0.188 0.812 36 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.429 2.758 12.809 13.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.324 6.324 3 C -0.013 4.013 4 C -0.046 4.046 5 N -0.155 5.155 6 C -0.470 4.470 7 H 0.110 0.890 8 C -0.185 4.185 9 N -0.475 5.475 10 Si 0.787 3.213 11 H -0.218 1.218 12 H -0.215 1.215 13 H -0.175 1.175 14 C 0.275 3.725 15 O -0.459 6.459 16 C -0.130 4.130 17 C -0.070 4.070 18 C -0.126 4.126 19 C -0.122 4.122 20 C 0.480 3.520 21 F -0.150 7.150 22 F -0.153 7.153 23 F -0.144 7.144 24 N -0.166 5.166 25 C -0.038 4.038 26 H 0.078 0.922 27 H 0.051 0.949 28 H 0.098 0.902 29 H 0.097 0.903 30 H 0.067 0.933 31 H 0.106 0.894 32 H 0.106 0.894 33 H 0.066 0.934 34 H 0.178 0.822 35 H 0.205 0.795 36 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 3.026 2.040 12.953 13.457 hybrid contribution 0.079 0.189 -1.649 1.662 sum 3.105 2.229 11.304 11.932 Atomic orbital electron populations 1.22716 0.80557 1.02602 1.00105 1.87909 1.20583 1.28551 1.95363 1.22741 0.92884 0.84955 1.00714 1.22319 0.94325 0.99659 0.88280 1.43325 1.32844 1.33504 1.05823 1.19232 1.42599 0.93527 0.91648 0.89000 1.25864 0.94622 0.94891 1.03143 1.70040 1.41065 1.02635 1.33735 0.85440 0.77120 0.78901 0.79874 1.21770 1.21461 1.17501 1.17937 0.82327 0.84965 0.87299 1.90593 1.60807 1.59887 1.34616 1.21638 0.96318 0.99316 0.95735 1.21833 0.94063 0.93630 0.97463 1.22018 1.02444 0.96649 0.91465 1.21281 0.91751 1.04395 0.94816 1.17611 0.75017 0.75588 0.83819 1.93233 1.93577 1.55287 1.72945 1.93215 1.60635 1.75164 1.86328 1.93218 1.50087 1.75660 1.95471 1.67170 1.15029 1.10482 1.23906 1.23099 1.00833 0.93474 0.86376 0.92166 0.94905 0.90221 0.90339 0.93314 0.89400 0.89402 0.93370 0.82239 0.79502 0.80846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.09 11.01 113.37 1.25 2.33 16 2 O -0.40 -15.53 9.76 -148.98 -1.45 -16.99 16 3 C 0.06 2.13 5.79 71.98 0.42 2.55 16 4 C 0.08 2.76 5.67 86.38 0.49 3.25 16 5 N -0.44 -20.55 2.78 -638.93 -1.77 -22.32 16 6 C -0.34 -17.60 7.88 84.10 0.66 -16.94 16 7 H 0.09 4.42 7.85 -2.91 -0.02 4.40 16 8 C 0.02 1.27 4.30 84.96 0.36 1.63 16 9 N -0.84 -49.54 11.35 21.68 0.25 -49.30 16 10 Si 0.96 43.57 29.61 68.60 2.03 45.60 16 11 H -0.29 -13.71 7.11 99.48 0.71 -13.01 16 12 H -0.29 -12.99 7.11 99.48 0.71 -12.28 16 13 H -0.25 -10.33 7.11 99.48 0.71 -9.63 16 14 C 0.49 24.19 6.52 86.75 0.57 24.76 16 15 O -0.58 -33.85 14.34 -4.00 -0.06 -33.91 16 16 C -0.12 -4.93 5.22 -19.99 -0.10 -5.04 16 17 C -0.04 -1.38 9.85 22.74 0.22 -1.16 16 18 C -0.11 -2.71 9.41 22.32 0.21 -2.50 16 19 C 0.02 0.48 6.30 42.57 0.27 0.75 16 20 C 0.53 13.41 3.43 71.24 0.24 13.65 16 21 F -0.17 -4.07 17.30 44.97 0.78 -3.29 16 22 F -0.17 -4.77 17.03 44.97 0.77 -4.01 16 23 F -0.16 -3.58 16.43 44.97 0.74 -2.84 16 24 N -0.46 -15.48 9.94 -182.75 -1.82 -17.29 16 25 C 0.12 4.48 8.54 85.04 0.73 5.20 16 26 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 27 H 0.03 0.98 8.14 -2.38 -0.02 0.96 16 28 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 29 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 30 H 0.05 1.75 7.16 -2.38 -0.02 1.74 16 31 H 0.09 3.01 3.60 -2.38 -0.01 3.00 16 32 H 0.09 2.70 8.14 -2.39 -0.02 2.68 16 33 H 0.26 14.87 8.31 -92.71 -0.77 14.10 16 34 H 0.16 4.73 8.06 -2.91 -0.02 4.70 16 35 H 0.19 3.19 7.59 -2.91 -0.02 3.17 16 36 H 0.17 6.80 5.74 -2.91 -0.02 6.78 16 Total: -1.00 -69.56 322.79 5.92 -63.65 By element: Atomic # 1 Polarization: 11.05 SS G_CDS: 1.14 Total: 12.20 kcal Atomic # 6 Polarization: 23.18 SS G_CDS: 5.32 Total: 28.50 kcal Atomic # 7 Polarization: -85.57 SS G_CDS: -3.34 Total: -88.91 kcal Atomic # 8 Polarization: -49.38 SS G_CDS: -1.51 Total: -50.89 kcal Atomic # 9 Polarization: -12.42 SS G_CDS: 2.28 Total: -10.14 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.60 kcal Total: -69.56 5.92 -63.65 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457180820.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.822 kcal (2) G-P(sol) polarization free energy of solvation -69.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -186.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds