Wall clock time and date at job start Tue Mar 31 2020 12:28:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.46999 * 2 1 4 4 H 1.09000 * 109.46893 * 304.99862 * 3 2 1 5 5 C 1.50698 * 109.47326 * 184.99818 * 3 2 1 6 6 H 1.07997 * 120.00174 * 239.99699 * 5 3 2 7 7 C 1.37883 * 119.99834 * 59.99912 * 5 3 2 8 8 N 1.31513 * 119.99814 * 0.02562 * 7 5 3 9 9 Si 1.86792 * 119.99866 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47295 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47139 * 119.99984 * 9 7 5 12 12 H 1.48507 * 109.47161 * 239.99946 * 9 7 5 13 13 N 1.46500 * 109.47114 * 64.99886 * 3 2 1 14 14 C 1.34777 * 119.99867 * 274.99914 * 13 3 2 15 15 O 1.21916 * 120.00164 * 0.02562 * 14 13 3 16 16 N 1.33373 * 119.99965 * 180.02562 * 14 13 3 17 17 C 1.33830 * 120.00059 * 119.72492 * 16 14 13 18 18 C 1.40924 * 120.41153 * 184.82271 * 17 16 14 19 19 C 1.36746 * 117.83076 * 179.97438 * 18 17 16 20 20 C 1.40314 * 118.48594 * 359.97438 * 19 18 17 21 21 C 1.50695 * 119.69219 * 180.02562 * 20 19 18 22 22 F 1.39902 * 109.47078 * 89.99593 * 21 20 19 23 23 F 1.39899 * 109.47398 * 209.99649 * 21 20 19 24 24 F 1.39898 * 109.46932 * 329.99638 * 21 20 19 25 25 N 1.30474 * 120.62100 * 359.97438 * 20 19 18 26 26 N 1.28418 * 122.43299 * 359.70057 * 25 20 19 27 27 H 0.97003 * 119.27506 * 180.30076 * 26 25 20 28 28 H 1.09000 * 109.47071 * 60.00119 * 1 2 3 29 29 H 1.08998 * 109.47537 * 300.00282 * 1 2 3 30 30 H 1.09002 * 109.47047 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47071 * 119.99881 * 2 1 3 32 32 H 1.09001 * 109.47296 * 240.00174 * 2 1 3 33 33 H 0.96999 * 120.00122 * 180.02562 * 8 7 5 34 34 H 0.96993 * 120.00322 * 95.00414 * 13 3 2 35 35 H 1.07995 * 121.08191 * 359.96835 * 18 17 16 36 36 H 1.08001 * 120.76051 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4444 -0.1238 6 1 4.1471 1.8891 0.6523 7 6 4.1433 0.8785 -1.2280 8 7 3.4062 0.3376 -2.1733 9 14 6.0049 0.8802 -1.3810 10 1 6.5987 1.5455 -0.1936 11 1 6.4962 -0.5188 -1.4625 12 1 6.4000 1.6159 -2.6091 13 7 1.6524 2.0975 1.2518 14 6 0.4351 2.6644 1.3669 15 8 -0.3437 2.6318 0.4294 16 7 0.0824 3.2612 2.5063 17 6 -0.2330 4.5618 2.5108 18 6 -0.5083 5.2248 3.7235 19 6 -0.8243 6.5541 3.6668 20 6 -0.8563 7.1815 2.4121 21 6 -1.2006 8.6455 2.3182 22 9 -0.0304 9.4067 2.4107 23 9 -1.8266 8.8997 1.0932 24 9 -2.0645 8.9894 3.3635 25 7 -0.5897 6.5094 1.3260 26 7 -0.2837 5.2623 1.3455 27 1 -0.0897 4.8084 0.5104 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 3.8293 -0.0609 -2.9499 34 1 2.2718 2.1233 1.9977 35 1 -0.4711 4.7003 4.6667 36 1 -1.0441 7.1085 4.5672 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000471920794.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:28:53 Heat of formation + Delta-G solvation = -92.136385 kcal Electronic energy + Delta-G solvation = -26449.647854 eV Core-core repulsion = 21942.076711 eV Total energy + Delta-G solvation = -4507.571143 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.104 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -50.51514 -48.05840 -47.95491 -42.25760 -39.39493 -35.92296 -34.78591 -34.66937 -32.51031 -31.57205 -30.48910 -27.48137 -27.03601 -25.49238 -23.70214 -23.00945 -21.01400 -20.02597 -19.59906 -19.17200 -18.89999 -18.19243 -18.16631 -16.81097 -16.29221 -16.18587 -15.57711 -14.93441 -14.89574 -14.78299 -14.65761 -14.43061 -14.39637 -14.17361 -14.10956 -14.04712 -13.36989 -12.77358 -12.69859 -12.55340 -11.84623 -11.66799 -11.45767 -11.31295 -11.28626 -11.03862 -10.91876 -10.54498 -10.30695 -10.23039 -9.63347 -9.15946 -9.09153 -8.57417 -8.36299 -7.92533 -6.19353 -4.29373 0.03385 0.61963 1.64184 2.38965 2.59381 3.16734 3.19308 3.22406 3.27999 3.31261 3.50877 3.83933 3.98068 4.03670 4.24116 4.32139 4.47539 5.05570 5.12259 5.23261 5.44725 5.54327 6.15490 6.37259 6.45208 6.63704 7.00884 7.13908 7.27111 7.33417 7.36992 7.48220 7.57264 7.72206 7.81317 8.11268 8.56382 8.69963 9.10663 9.38786 10.85955 Molecular weight = 318.10amu Principal moments of inertia in cm(-1) A = 0.018960 B = 0.003067 C = 0.002851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1476.440144 B = 9126.285821 C = 9819.929062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.128 4.128 3 C 0.276 3.724 4 H 0.049 0.951 5 C -0.536 4.536 6 H 0.062 0.938 7 C 0.068 3.932 8 N -0.880 5.880 9 Si 0.903 3.097 10 H -0.273 1.273 11 H -0.282 1.282 12 H -0.282 1.282 13 N -0.689 5.689 14 C 0.643 3.357 15 O -0.598 6.598 16 N -0.595 5.595 17 C 0.406 3.594 18 C -0.087 4.087 19 C -0.066 4.066 20 C -0.042 4.042 21 C 0.547 3.453 22 F -0.166 7.166 23 F -0.163 7.163 24 F -0.165 7.165 25 N -0.149 5.149 26 N -0.422 5.422 27 H 0.460 0.540 28 H 0.048 0.952 29 H 0.039 0.961 30 H 0.023 0.977 31 H 0.032 0.968 32 H 0.100 0.900 33 H 0.265 0.735 34 H 0.392 0.608 35 H 0.180 0.820 36 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.220 15.737 12.854 21.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.167 4.167 3 C 0.174 3.826 4 H 0.067 0.933 5 C -0.575 4.575 6 H 0.080 0.920 7 C -0.136 4.136 8 N -0.518 5.518 9 Si 0.730 3.270 10 H -0.197 1.197 11 H -0.207 1.207 12 H -0.208 1.208 13 N -0.337 5.337 14 C 0.342 3.658 15 O -0.478 6.478 16 N -0.339 5.339 17 C 0.143 3.857 18 C -0.117 4.117 19 C -0.092 4.092 20 C -0.217 4.217 21 C 0.490 3.510 22 F -0.148 7.148 23 F -0.144 7.144 24 F -0.147 7.147 25 N 0.025 4.975 26 N -0.160 5.160 27 H 0.311 0.689 28 H 0.067 0.933 29 H 0.058 0.942 30 H 0.042 0.958 31 H 0.051 0.949 32 H 0.118 0.882 33 H 0.075 0.925 34 H 0.225 0.775 35 H 0.197 0.803 36 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -8.544 14.870 11.454 20.623 hybrid contribution 1.274 -0.203 0.007 1.290 sum -7.270 14.667 11.461 19.983 Atomic orbital electron populations 1.21825 0.98227 0.98067 1.01266 1.21942 0.92743 0.99608 1.02384 1.18858 0.94314 0.89353 0.80104 0.93302 1.21238 0.90463 1.39363 1.06415 0.91993 1.24885 0.98768 0.94654 0.95295 1.69903 1.35138 1.37410 1.09319 0.86373 0.84611 0.77888 0.78130 1.19725 1.20750 1.20825 1.46219 1.12621 1.56131 1.18767 1.17337 0.83688 0.81808 0.82972 1.90981 1.51137 1.65526 1.40179 1.69328 1.30128 1.04553 1.29919 1.20525 0.89829 0.88503 0.86870 1.21288 1.00109 0.93189 0.97115 1.21716 0.94982 0.95074 0.97464 1.21344 1.13674 0.95134 0.91501 1.17163 0.74886 0.84615 0.74314 1.93270 1.48132 1.77541 1.95840 1.93264 1.82574 1.94907 1.43695 1.93226 1.70395 1.92968 1.58087 1.70594 1.02486 0.95680 1.28719 1.44489 1.54734 1.04306 1.12461 0.68851 0.93256 0.94182 0.95821 0.94905 0.88173 0.92508 0.77465 0.80313 0.81428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.17 8.51 37.16 0.32 -2.85 16 2 C -0.13 -3.17 5.45 -26.73 -0.15 -3.31 16 3 C 0.28 6.94 2.24 -69.08 -0.15 6.79 16 4 H 0.05 1.40 7.58 -51.93 -0.39 1.00 16 5 C -0.54 -14.07 8.73 -34.44 -0.30 -14.37 16 6 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 7 C 0.07 1.79 5.29 -17.82 -0.09 1.70 16 8 N -0.88 -24.39 11.29 55.43 0.63 -23.76 16 9 Si 0.90 20.43 29.54 -169.99 -5.02 15.41 16 10 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 11 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 12 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 13 N -0.69 -14.84 5.03 -60.11 -0.30 -15.14 16 14 C 0.64 13.31 5.74 -88.16 -0.51 12.80 16 15 O -0.60 -13.86 12.83 4.99 0.06 -13.79 16 16 N -0.59 -10.16 10.50 -16.09 -0.17 -10.33 16 17 C 0.41 5.54 7.42 -155.88 -1.16 4.38 16 18 C -0.09 -0.77 10.12 -39.11 -0.40 -1.16 16 19 C -0.07 -0.47 9.48 -39.34 -0.37 -0.84 16 20 C -0.04 -0.40 6.38 -82.39 -0.53 -0.92 16 21 C 0.55 4.71 3.44 36.00 0.12 4.84 16 22 F -0.17 -1.49 17.30 2.25 0.04 -1.46 16 23 F -0.16 -1.65 17.04 2.25 0.04 -1.61 16 24 F -0.17 -1.20 16.49 2.25 0.04 -1.16 16 25 N -0.15 -1.82 11.02 33.70 0.37 -1.44 16 26 N -0.42 -5.88 6.06 31.17 0.19 -5.69 16 27 H 0.46 7.31 6.56 -190.47 -1.25 6.06 16 28 H 0.05 1.20 7.84 -51.93 -0.41 0.79 16 29 H 0.04 0.93 5.64 -51.93 -0.29 0.64 16 30 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.10 2.71 5.95 -51.93 -0.31 2.40 16 33 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 34 H 0.39 7.74 8.64 -40.82 -0.35 7.39 16 35 H 0.18 1.08 8.06 -52.49 -0.42 0.66 16 36 H 0.17 0.54 7.66 -52.49 -0.40 0.14 16 LS Contribution 321.49 15.07 4.84 4.84 Total: -1.00 -30.70 321.49 -6.71 -37.41 By element: Atomic # 1 Polarization: 13.91 SS G_CDS: -4.22 Total: 9.69 kcal Atomic # 6 Polarization: 10.25 SS G_CDS: -3.21 Total: 7.04 kcal Atomic # 7 Polarization: -57.08 SS G_CDS: 0.72 Total: -56.37 kcal Atomic # 8 Polarization: -13.86 SS G_CDS: 0.06 Total: -13.79 kcal Atomic # 9 Polarization: -4.34 SS G_CDS: 0.11 Total: -4.23 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.41 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -30.70 -6.71 -37.41 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000471920794.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.726 kcal (2) G-P(sol) polarization free energy of solvation -30.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds