Wall clock time and date at job start Tue Mar 31 2020 12:28:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.46999 * 2 1 4 4 H 1.09000 * 109.46893 * 304.99862 * 3 2 1 5 5 C 1.50698 * 109.47326 * 184.99818 * 3 2 1 6 6 H 1.07997 * 120.00174 * 239.99699 * 5 3 2 7 7 C 1.37883 * 119.99834 * 59.99912 * 5 3 2 8 8 N 1.31513 * 119.99814 * 0.02562 * 7 5 3 9 9 Si 1.86792 * 119.99866 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47295 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47139 * 119.99984 * 9 7 5 12 12 H 1.48507 * 109.47161 * 239.99946 * 9 7 5 13 13 N 1.46500 * 109.47114 * 64.99886 * 3 2 1 14 14 C 1.34777 * 119.99867 * 274.99914 * 13 3 2 15 15 O 1.21916 * 120.00164 * 0.02562 * 14 13 3 16 16 N 1.33373 * 119.99965 * 180.02562 * 14 13 3 17 17 C 1.33830 * 120.00059 * 119.72492 * 16 14 13 18 18 C 1.40924 * 120.41153 * 184.82271 * 17 16 14 19 19 C 1.36746 * 117.83076 * 179.97438 * 18 17 16 20 20 C 1.40314 * 118.48594 * 359.97438 * 19 18 17 21 21 C 1.50695 * 119.69219 * 180.02562 * 20 19 18 22 22 F 1.39902 * 109.47078 * 89.99593 * 21 20 19 23 23 F 1.39899 * 109.47398 * 209.99649 * 21 20 19 24 24 F 1.39898 * 109.46932 * 329.99638 * 21 20 19 25 25 N 1.30474 * 120.62100 * 359.97438 * 20 19 18 26 26 N 1.28418 * 122.43299 * 359.70057 * 25 20 19 27 27 H 0.97003 * 119.27506 * 180.30076 * 26 25 20 28 28 H 1.09000 * 109.47071 * 60.00119 * 1 2 3 29 29 H 1.08998 * 109.47537 * 300.00282 * 1 2 3 30 30 H 1.09002 * 109.47047 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47071 * 119.99881 * 2 1 3 32 32 H 1.09001 * 109.47296 * 240.00174 * 2 1 3 33 33 H 0.96999 * 120.00122 * 180.02562 * 8 7 5 34 34 H 0.96993 * 120.00322 * 95.00414 * 13 3 2 35 35 H 1.07995 * 121.08191 * 359.96835 * 18 17 16 36 36 H 1.08001 * 120.76051 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4444 -0.1238 6 1 4.1471 1.8891 0.6523 7 6 4.1433 0.8785 -1.2280 8 7 3.4062 0.3376 -2.1733 9 14 6.0049 0.8802 -1.3810 10 1 6.5987 1.5455 -0.1936 11 1 6.4962 -0.5188 -1.4625 12 1 6.4000 1.6159 -2.6091 13 7 1.6524 2.0975 1.2518 14 6 0.4351 2.6644 1.3669 15 8 -0.3437 2.6318 0.4294 16 7 0.0824 3.2612 2.5063 17 6 -0.2330 4.5618 2.5108 18 6 -0.5083 5.2248 3.7235 19 6 -0.8243 6.5541 3.6668 20 6 -0.8563 7.1815 2.4121 21 6 -1.2006 8.6455 2.3182 22 9 -0.0304 9.4067 2.4107 23 9 -1.8266 8.8997 1.0932 24 9 -2.0645 8.9894 3.3635 25 7 -0.5897 6.5094 1.3260 26 7 -0.2837 5.2623 1.3455 27 1 -0.0897 4.8084 0.5104 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 3.8293 -0.0609 -2.9499 34 1 2.2718 2.1233 1.9977 35 1 -0.4711 4.7003 4.6667 36 1 -1.0441 7.1085 4.5672 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000471920794.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:28:53 Heat of formation + Delta-G solvation = -114.681182 kcal Electronic energy + Delta-G solvation = -26450.625470 eV Core-core repulsion = 21942.076711 eV Total energy + Delta-G solvation = -4508.548759 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.104 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -51.24633 -48.75116 -48.72472 -43.25990 -40.90361 -37.48938 -36.13708 -35.63442 -34.36851 -33.11216 -31.93913 -29.05199 -28.24046 -26.58320 -25.02646 -24.45083 -22.53304 -21.38317 -20.87927 -20.33439 -19.63562 -19.46683 -18.97672 -18.14246 -17.63068 -17.53843 -16.97872 -16.65644 -16.29248 -15.65207 -15.52953 -15.39983 -15.16264 -15.11832 -14.88390 -14.84319 -14.73713 -14.62421 -14.25386 -13.60702 -13.49577 -13.24111 -13.07720 -12.83296 -12.76489 -12.59569 -12.23296 -12.12128 -12.06006 -11.82675 -11.59508 -11.11945 -10.63729 -10.54572 -9.80825 -9.39410 -8.21282 -6.39154 -0.80196 -0.32814 0.69040 1.41401 1.42288 1.46120 1.54433 1.63391 1.89183 2.35407 2.41538 2.57417 2.71355 3.08202 3.16604 3.23667 3.42622 3.58675 4.08724 4.41554 4.44605 4.50487 4.51740 4.68749 4.80522 4.96441 5.09755 5.19114 5.36655 5.48180 5.54580 5.71226 5.82606 6.08567 6.29583 6.40121 6.68145 6.88762 7.28778 7.58670 8.84435 Molecular weight = 318.10amu Principal moments of inertia in cm(-1) A = 0.018960 B = 0.003067 C = 0.002851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1476.440144 B = 9126.285821 C = 9819.929062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.121 4.121 3 C 0.286 3.714 4 H 0.004 0.996 5 C -0.550 4.550 6 H 0.069 0.931 7 C 0.018 3.982 8 N -0.912 5.912 9 Si 0.972 3.028 10 H -0.263 1.263 11 H -0.277 1.277 12 H -0.282 1.282 13 N -0.693 5.693 14 C 0.651 3.349 15 O -0.634 6.634 16 N -0.629 5.629 17 C 0.410 3.590 18 C -0.085 4.085 19 C -0.037 4.037 20 C -0.025 4.025 21 C 0.553 3.447 22 F -0.165 7.165 23 F -0.173 7.173 24 F -0.150 7.150 25 N -0.184 5.184 26 N -0.434 5.434 27 H 0.448 0.552 28 H 0.027 0.973 29 H 0.036 0.964 30 H 0.045 0.955 31 H 0.037 0.963 32 H 0.076 0.924 33 H 0.266 0.734 34 H 0.401 0.599 35 H 0.214 0.786 36 H 0.221 0.779 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.086 17.580 15.657 24.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.161 4.161 3 C 0.182 3.818 4 H 0.022 0.978 5 C -0.589 4.589 6 H 0.087 0.913 7 C -0.182 4.182 8 N -0.550 5.550 9 Si 0.797 3.203 10 H -0.186 1.186 11 H -0.203 1.203 12 H -0.208 1.208 13 N -0.342 5.342 14 C 0.351 3.649 15 O -0.517 6.517 16 N -0.378 5.378 17 C 0.150 3.850 18 C -0.115 4.115 19 C -0.062 4.062 20 C -0.199 4.199 21 C 0.497 3.503 22 F -0.147 7.147 23 F -0.154 7.154 24 F -0.131 7.131 25 N -0.008 5.008 26 N -0.167 5.167 27 H 0.296 0.704 28 H 0.047 0.953 29 H 0.055 0.945 30 H 0.064 0.936 31 H 0.056 0.944 32 H 0.094 0.906 33 H 0.076 0.924 34 H 0.235 0.765 35 H 0.231 0.769 36 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges -8.436 16.804 14.299 23.622 hybrid contribution 1.081 -0.475 -0.776 1.413 sum -7.355 16.330 13.523 22.442 Atomic orbital electron populations 1.21641 0.97087 0.99028 1.00009 1.21808 0.93655 0.99285 1.01308 1.18420 0.93803 0.89117 0.80417 0.97829 1.21539 0.91102 1.39407 1.06811 0.91327 1.25758 1.03451 0.94153 0.94861 1.70044 1.37078 1.38073 1.09835 0.85296 0.78863 0.77961 0.78208 1.18648 1.20279 1.20757 1.45942 1.13555 1.56907 1.17816 1.17575 0.82705 0.81279 0.83339 1.90936 1.52014 1.66669 1.42085 1.69215 1.35135 1.06239 1.27197 1.21277 0.87693 0.87780 0.88256 1.21735 0.99731 0.93718 0.96277 1.22290 0.91739 0.94296 0.97922 1.21959 1.10314 0.95523 0.92144 1.17019 0.74996 0.83960 0.74357 1.93282 1.48184 1.77385 1.95825 1.93257 1.82753 1.94892 1.44507 1.93267 1.69873 1.92753 1.57223 1.70661 1.04824 0.95070 1.30291 1.44462 1.55071 1.05042 1.12118 0.70391 0.95340 0.94516 0.93572 0.94371 0.90554 0.92429 0.76504 0.76908 0.76220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.76 8.51 71.98 0.61 -5.15 16 2 C -0.12 -6.23 5.45 30.60 0.17 -6.07 16 3 C 0.29 15.06 2.24 44.25 0.10 15.16 16 4 H 0.00 0.23 7.58 -2.39 -0.02 0.22 16 5 C -0.55 -29.54 8.73 25.60 0.22 -29.32 16 6 H 0.07 3.50 7.74 -2.91 -0.02 3.48 16 7 C 0.02 0.99 5.29 84.66 0.45 1.43 16 8 N -0.91 -52.09 11.29 21.45 0.24 -51.84 16 9 Si 0.97 42.15 29.54 68.60 2.03 44.18 16 10 H -0.26 -10.85 7.11 99.48 0.71 -10.14 16 11 H -0.28 -11.76 7.11 99.48 0.71 -11.05 16 12 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 13 N -0.69 -30.93 5.03 -462.22 -2.32 -33.26 16 14 C 0.65 27.97 5.74 179.49 1.03 29.00 16 15 O -0.63 -31.03 12.83 -5.04 -0.06 -31.09 16 16 N -0.63 -21.60 10.50 -323.72 -3.40 -25.00 16 17 C 0.41 10.80 7.42 134.05 0.99 11.80 16 18 C -0.08 -1.19 10.12 22.58 0.23 -0.96 16 19 C -0.04 -0.34 9.48 22.43 0.21 -0.13 16 20 C -0.02 -0.40 6.38 43.26 0.28 -0.12 16 21 C 0.55 7.87 3.44 71.23 0.24 8.12 16 22 F -0.17 -2.50 17.30 44.97 0.78 -1.72 16 23 F -0.17 -3.19 17.04 44.97 0.77 -2.42 16 24 F -0.15 -1.55 16.49 44.97 0.74 -0.81 16 25 N -0.18 -4.35 11.02 -47.28 -0.52 -4.87 16 26 N -0.43 -12.21 6.06 -55.28 -0.34 -12.55 16 27 H 0.45 15.16 6.56 -220.01 -1.44 13.72 16 28 H 0.03 1.43 7.84 -2.39 -0.02 1.42 16 29 H 0.04 1.76 5.64 -2.39 -0.01 1.74 16 30 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 31 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 32 H 0.08 4.30 5.95 -2.39 -0.01 4.28 16 33 H 0.27 14.34 8.31 -92.71 -0.77 13.57 16 34 H 0.40 16.16 8.64 -92.71 -0.80 15.36 16 35 H 0.21 1.56 8.06 -2.91 -0.02 1.53 16 36 H 0.22 -0.16 7.66 -2.91 -0.02 -0.18 16 Total: -1.00 -70.69 321.49 1.38 -69.30 By element: Atomic # 1 Polarization: 27.38 SS G_CDS: -1.07 Total: 26.31 kcal Atomic # 6 Polarization: 19.23 SS G_CDS: 4.54 Total: 23.77 kcal Atomic # 7 Polarization: -121.18 SS G_CDS: -6.34 Total: -127.52 kcal Atomic # 8 Polarization: -31.03 SS G_CDS: -0.06 Total: -31.09 kcal Atomic # 9 Polarization: -7.24 SS G_CDS: 2.29 Total: -4.95 kcal Atomic # 14 Polarization: 42.15 SS G_CDS: 2.03 Total: 44.18 kcal Total: -70.69 1.38 -69.30 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000471920794.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.376 kcal (2) G-P(sol) polarization free energy of solvation -70.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds