Wall clock time and date at job start Tue Mar 31 2020 12:06:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86805 * 119.99916 * 2 1 4 4 H 1.48498 * 109.47027 * 240.00011 * 3 2 1 5 5 H 1.48506 * 109.47025 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46899 * 119.99654 * 3 2 1 7 7 C 1.37873 * 120.00053 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00113 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00122 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.47167 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47123 * 179.97438 * 10 9 7 12 12 N 1.46493 * 109.47326 * 179.97438 * 11 10 9 13 13 C 1.34782 * 120.00296 * 180.02562 * 12 11 10 14 14 O 1.21911 * 119.99816 * 359.97438 * 13 12 11 15 15 N 1.33376 * 120.00055 * 180.02562 * 13 12 11 16 16 C 1.33829 * 119.99719 * 244.79112 * 15 13 12 17 17 C 1.40914 * 120.41332 * 175.06998 * 16 15 13 18 18 C 1.36747 * 117.83472 * 180.02562 * 17 16 15 19 19 C 1.40317 * 118.48252 * 359.97438 * 18 17 16 20 20 C 1.50696 * 119.68805 * 180.02562 * 19 18 17 21 21 F 1.39906 * 109.46888 * 184.97946 * 20 19 18 22 22 F 1.39908 * 109.47163 * 304.97518 * 20 19 18 23 23 F 1.39893 * 109.47574 * 64.97720 * 20 19 18 24 24 N 1.30468 * 120.62170 * 0.02562 * 19 18 17 25 25 N 1.28423 * 122.43385 * 0.02562 * 24 19 18 26 26 H 0.96999 * 119.27279 * 179.72047 * 25 24 19 27 27 H 0.96998 * 119.99919 * 0.02562 * 1 2 3 28 28 H 1.09004 * 109.47253 * 59.99538 * 9 7 2 29 29 H 1.09000 * 109.46977 * 300.00152 * 9 7 2 30 30 H 1.08998 * 109.46852 * 60.00004 * 10 9 7 31 31 H 1.08995 * 109.47108 * 299.99814 * 10 9 7 32 32 H 1.09004 * 109.47043 * 59.99921 * 11 10 9 33 33 H 1.09000 * 109.47232 * 300.00508 * 11 10 9 34 34 H 0.97005 * 120.00299 * 0.02562 * 12 11 10 35 35 H 1.08003 * 121.08459 * 359.97438 * 17 16 15 36 36 H 1.08002 * 120.76062 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6965 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0005 11 6 1.4804 -4.9870 0.0012 12 7 2.4324 -6.1005 0.0006 13 6 1.9832 -7.3713 0.0005 14 8 0.7846 -7.5940 0.0013 15 7 2.8499 -8.3850 0.0004 16 6 2.9095 -9.2143 -1.0483 17 6 3.8905 -10.2244 -1.1041 18 6 3.9037 -11.0418 -2.2003 19 6 2.9451 -10.8316 -3.2033 20 6 2.9345 -11.7169 -4.4228 21 9 1.9744 -11.2520 -5.3281 22 9 4.1959 -11.6929 -5.0275 23 9 2.6232 -13.0274 -4.0450 24 7 2.0630 -9.8770 -3.0900 25 7 2.0243 -9.0920 -2.0744 26 1 1.3510 -8.3946 -2.0393 27 1 -0.4850 0.8400 -0.0004 28 1 0.6247 -2.5571 -0.8897 29 1 0.6241 -2.5566 0.8903 30 1 2.8720 -3.6042 0.8905 31 1 2.8720 -3.6043 -0.8894 32 1 0.8535 -5.0450 -0.8886 33 1 0.8540 -5.0445 0.8913 34 1 3.3861 -5.9233 0.0002 35 1 4.6091 -10.3484 -0.3074 36 1 4.6346 -11.8316 -2.2917 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000471941394.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:06:24 Heat of formation + Delta-G solvation = -100.192453 kcal Electronic energy + Delta-G solvation = -25215.379181 eV Core-core repulsion = 20707.458701 eV Total energy + Delta-G solvation = -4507.920480 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.104 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -50.70343 -48.23041 -48.15743 -42.62919 -39.85926 -36.12737 -35.22627 -35.11889 -33.38422 -31.95290 -30.93155 -27.74499 -27.02217 -25.68670 -23.98525 -23.06149 -21.09631 -20.64173 -20.30384 -19.41392 -19.11185 -18.41430 -18.27601 -17.09288 -16.72432 -16.36139 -15.94878 -15.48704 -15.04404 -14.97568 -14.87007 -14.71319 -14.59316 -14.48817 -14.30124 -14.29117 -14.17724 -13.78980 -12.93095 -12.35950 -12.32577 -12.13231 -11.86691 -11.74763 -11.59672 -11.06364 -10.91368 -10.78380 -10.64236 -9.92863 -9.87038 -9.47680 -9.18817 -8.95997 -8.69135 -8.40391 -6.05059 -4.08539 -0.29932 0.26274 1.31543 2.07365 2.24123 2.58572 2.96083 3.23143 3.27263 3.29914 3.34757 3.36801 3.70828 3.75755 3.88248 4.07335 4.41479 4.64078 4.90351 5.03601 5.17020 5.30615 5.56256 5.67622 5.77205 6.06388 6.34797 6.51373 6.72830 6.91888 6.98633 7.06127 7.58470 7.61392 7.70487 7.92936 8.32879 8.37615 8.97691 9.55810 11.06179 Molecular weight = 318.10amu Principal moments of inertia in cm(-1) A = 0.024080 B = 0.002056 C = 0.001998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.498723 B =13612.520312 C =14011.253725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.057 3.943 3 Si 0.894 3.106 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.524 4.524 8 H 0.055 0.945 9 C 0.025 3.975 10 C -0.120 4.120 11 C 0.122 3.878 12 N -0.711 5.711 13 C 0.652 3.348 14 O -0.591 6.591 15 N -0.600 5.600 16 C 0.416 3.584 17 C -0.088 4.088 18 C -0.059 4.059 19 C -0.032 4.032 20 C 0.545 3.455 21 F -0.160 7.160 22 F -0.164 7.164 23 F -0.164 7.164 24 N -0.150 5.150 25 N -0.425 5.425 26 H 0.458 0.542 27 H 0.262 0.738 28 H 0.019 0.981 29 H 0.020 0.980 30 H 0.056 0.944 31 H 0.054 0.946 32 H 0.065 0.935 33 H 0.067 0.933 34 H 0.402 0.598 35 H 0.183 0.817 36 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.680 -28.187 -8.458 31.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.144 4.144 3 Si 0.722 3.278 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.562 4.562 8 H 0.073 0.927 9 C -0.013 4.013 10 C -0.159 4.159 11 C -0.001 4.001 12 N -0.363 5.363 13 C 0.351 3.649 14 O -0.470 6.470 15 N -0.345 5.345 16 C 0.154 3.846 17 C -0.118 4.118 18 C -0.085 4.085 19 C -0.207 4.207 20 C 0.489 3.511 21 F -0.141 7.141 22 F -0.145 7.145 23 F -0.146 7.146 24 N 0.025 4.975 25 N -0.161 5.161 26 H 0.308 0.692 27 H 0.072 0.928 28 H 0.037 0.963 29 H 0.038 0.962 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.083 0.917 33 H 0.086 0.914 34 H 0.236 0.764 35 H 0.200 0.800 36 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 9.188 -27.548 -8.083 30.144 hybrid contribution 0.673 1.224 0.072 1.399 sum 9.861 -26.324 -8.011 29.230 Atomic orbital electron populations 1.69955 1.06068 1.26869 1.50371 1.25033 0.94874 0.99335 0.95207 0.86626 0.79556 0.83011 0.78612 1.20232 1.21235 1.20207 1.21150 0.92965 0.90900 1.51210 0.92672 1.19026 0.93799 0.90781 0.97695 1.21904 0.99829 0.93081 1.01042 1.21706 0.91618 0.84631 1.02175 1.45909 1.11299 1.04724 1.74395 1.17388 0.86102 0.83470 0.77891 1.91026 1.16359 1.85501 1.54082 1.69220 1.33646 1.10323 1.21353 1.20519 0.88317 0.92691 0.83072 1.21317 0.97931 0.92535 1.00023 1.21765 0.96657 0.98899 0.91200 1.21459 0.99800 1.00164 0.99270 1.17168 0.74482 0.78085 0.81415 1.93278 1.63717 1.88306 1.68840 1.93269 1.40621 1.96355 1.84269 1.93270 1.92769 1.37333 1.91202 1.70678 1.18179 0.99343 1.09304 1.44421 1.29708 1.28723 1.13262 0.69206 0.92822 0.96279 0.96194 0.92524 0.92701 0.91677 0.91449 0.76355 0.79962 0.81155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.79 13.29 55.43 0.74 -26.05 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.47 29.54 -169.99 -5.02 16.45 16 4 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.52 -14.61 9.11 -34.44 -0.31 -14.93 16 8 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 9 C 0.02 0.62 4.97 -27.88 -0.14 0.49 16 10 C -0.12 -2.36 5.27 -26.73 -0.14 -2.50 16 11 C 0.12 2.16 5.67 -4.05 -0.02 2.14 16 12 N -0.71 -10.88 5.56 -65.53 -0.36 -11.24 16 13 C 0.65 10.48 6.99 -88.16 -0.62 9.86 16 14 O -0.59 -11.32 16.03 5.00 0.08 -11.24 16 15 N -0.60 -7.90 10.50 -16.09 -0.17 -8.07 16 16 C 0.42 4.17 7.43 -155.89 -1.16 3.02 16 17 C -0.09 -0.50 10.12 -39.11 -0.40 -0.90 16 18 C -0.06 -0.25 9.70 -39.34 -0.38 -0.63 16 19 C -0.03 -0.22 6.35 -82.39 -0.52 -0.74 16 20 C 0.55 3.47 3.33 36.00 0.12 3.59 16 21 F -0.16 -1.30 16.85 2.25 0.04 -1.26 16 22 F -0.16 -0.96 17.17 2.25 0.04 -0.92 16 23 F -0.16 -1.02 17.29 2.25 0.04 -0.98 16 24 N -0.15 -1.36 10.80 33.70 0.36 -1.00 16 25 N -0.42 -4.34 6.08 31.17 0.19 -4.15 16 26 H 0.46 5.28 6.73 -190.47 -1.28 3.99 16 27 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 28 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 29 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 31 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 33 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 34 H 0.40 5.29 8.57 -40.82 -0.35 4.94 16 35 H 0.18 0.56 8.06 -52.48 -0.42 0.14 16 36 H 0.17 0.09 8.06 -52.49 -0.42 -0.33 16 LS Contribution 335.16 15.07 5.05 5.05 Total: -1.00 -33.93 335.16 -7.24 -41.17 By element: Atomic # 1 Polarization: 5.88 SS G_CDS: -4.56 Total: 1.32 kcal Atomic # 6 Polarization: 4.60 SS G_CDS: -3.67 Total: 0.93 kcal Atomic # 7 Polarization: -51.27 SS G_CDS: 0.76 Total: -50.51 kcal Atomic # 8 Polarization: -11.32 SS G_CDS: 0.08 Total: -11.24 kcal Atomic # 9 Polarization: -3.28 SS G_CDS: 0.12 Total: -3.16 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -33.93 -7.24 -41.17 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000471941394.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.024 kcal (2) G-P(sol) polarization free energy of solvation -33.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds