Wall clock time and date at job start Tue Mar 31 2020 12:06:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86805 * 119.99916 * 2 1 4 4 H 1.48498 * 109.47027 * 240.00011 * 3 2 1 5 5 H 1.48506 * 109.47025 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46899 * 119.99654 * 3 2 1 7 7 C 1.37873 * 120.00053 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00113 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00122 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.47167 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47123 * 179.97438 * 10 9 7 12 12 N 1.46493 * 109.47326 * 179.97438 * 11 10 9 13 13 C 1.34782 * 120.00296 * 180.02562 * 12 11 10 14 14 O 1.21911 * 119.99816 * 359.97438 * 13 12 11 15 15 N 1.33376 * 120.00055 * 180.02562 * 13 12 11 16 16 C 1.33829 * 119.99719 * 244.79112 * 15 13 12 17 17 C 1.40914 * 120.41332 * 175.06998 * 16 15 13 18 18 C 1.36747 * 117.83472 * 180.02562 * 17 16 15 19 19 C 1.40317 * 118.48252 * 359.97438 * 18 17 16 20 20 C 1.50696 * 119.68805 * 180.02562 * 19 18 17 21 21 F 1.39906 * 109.46888 * 184.97946 * 20 19 18 22 22 F 1.39908 * 109.47163 * 304.97518 * 20 19 18 23 23 F 1.39893 * 109.47574 * 64.97720 * 20 19 18 24 24 N 1.30468 * 120.62170 * 0.02562 * 19 18 17 25 25 N 1.28423 * 122.43385 * 0.02562 * 24 19 18 26 26 H 0.96999 * 119.27279 * 179.72047 * 25 24 19 27 27 H 0.96998 * 119.99919 * 0.02562 * 1 2 3 28 28 H 1.09004 * 109.47253 * 59.99538 * 9 7 2 29 29 H 1.09000 * 109.46977 * 300.00152 * 9 7 2 30 30 H 1.08998 * 109.46852 * 60.00004 * 10 9 7 31 31 H 1.08995 * 109.47108 * 299.99814 * 10 9 7 32 32 H 1.09004 * 109.47043 * 59.99921 * 11 10 9 33 33 H 1.09000 * 109.47232 * 300.00508 * 11 10 9 34 34 H 0.97005 * 120.00299 * 0.02562 * 12 11 10 35 35 H 1.08003 * 121.08459 * 359.97438 * 17 16 15 36 36 H 1.08002 * 120.76062 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6965 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0005 11 6 1.4804 -4.9870 0.0012 12 7 2.4324 -6.1005 0.0006 13 6 1.9832 -7.3713 0.0005 14 8 0.7846 -7.5940 0.0013 15 7 2.8499 -8.3850 0.0004 16 6 2.9095 -9.2143 -1.0483 17 6 3.8905 -10.2244 -1.1041 18 6 3.9037 -11.0418 -2.2003 19 6 2.9451 -10.8316 -3.2033 20 6 2.9345 -11.7169 -4.4228 21 9 1.9744 -11.2520 -5.3281 22 9 4.1959 -11.6929 -5.0275 23 9 2.6232 -13.0274 -4.0450 24 7 2.0630 -9.8770 -3.0900 25 7 2.0243 -9.0920 -2.0744 26 1 1.3510 -8.3946 -2.0393 27 1 -0.4850 0.8400 -0.0004 28 1 0.6247 -2.5571 -0.8897 29 1 0.6241 -2.5566 0.8903 30 1 2.8720 -3.6042 0.8905 31 1 2.8720 -3.6043 -0.8894 32 1 0.8535 -5.0450 -0.8886 33 1 0.8540 -5.0445 0.8913 34 1 3.3861 -5.9233 0.0002 35 1 4.6091 -10.3484 -0.3074 36 1 4.6346 -11.8316 -2.2917 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000471941394.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:06:22 Heat of formation + Delta-G solvation = -125.294275 kcal Electronic energy + Delta-G solvation = -25216.467677 eV Core-core repulsion = 20707.458701 eV Total energy + Delta-G solvation = -4509.008977 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.104 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -51.24794 -48.74228 -48.73846 -43.34664 -40.98795 -37.34914 -36.41006 -35.70779 -35.24579 -33.28061 -32.21376 -28.77644 -28.28181 -26.65693 -24.94020 -24.43689 -22.40267 -22.07195 -20.95275 -20.20585 -19.64320 -19.29923 -18.97255 -18.54590 -17.63706 -17.62129 -17.03037 -16.77750 -16.49917 -15.90967 -15.60482 -15.52844 -15.49345 -15.18074 -15.12850 -14.87642 -14.84272 -14.77444 -14.29146 -13.85375 -13.68637 -13.49012 -13.09164 -12.82264 -12.70480 -12.60540 -12.44973 -12.10906 -12.04405 -11.74019 -11.53544 -11.27072 -10.83607 -10.57440 -10.25839 -9.51756 -8.21943 -6.33833 -0.86890 -0.41351 0.61815 1.30292 1.40025 1.43213 1.51080 1.54383 1.68165 2.21236 2.39826 2.40811 2.66478 3.06664 3.11661 3.22643 3.29930 3.52618 3.91710 4.07851 4.12568 4.37795 4.46279 4.48191 4.75562 4.85278 4.86167 5.04198 5.10612 5.29500 5.47367 5.65354 5.80275 6.13594 6.18681 6.29286 6.46806 6.82956 7.23467 7.35834 8.89969 Molecular weight = 318.10amu Principal moments of inertia in cm(-1) A = 0.024080 B = 0.002056 C = 0.001998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.498723 B =13612.520312 C =14011.253725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.003 4.003 3 Si 0.968 3.032 4 H -0.265 1.265 5 H -0.285 1.285 6 H -0.266 1.266 7 C -0.543 4.543 8 H 0.066 0.934 9 C 0.025 3.975 10 C -0.101 4.101 11 C 0.137 3.863 12 N -0.705 5.705 13 C 0.657 3.343 14 O -0.634 6.634 15 N -0.631 5.631 16 C 0.417 3.583 17 C -0.085 4.085 18 C -0.034 4.034 19 C -0.019 4.019 20 C 0.550 3.450 21 F -0.172 7.172 22 F -0.156 7.156 23 F -0.159 7.159 24 N -0.183 5.183 25 N -0.432 5.432 26 H 0.449 0.551 27 H 0.264 0.736 28 H -0.006 1.006 29 H -0.008 1.008 30 H 0.066 0.934 31 H 0.069 0.931 32 H 0.057 0.943 33 H 0.049 0.951 34 H 0.414 0.586 35 H 0.215 0.785 36 H 0.220 0.780 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.790 -29.825 -9.064 34.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.201 4.201 3 Si 0.792 3.208 4 H -0.189 1.189 5 H -0.211 1.211 6 H -0.191 1.191 7 C -0.581 4.581 8 H 0.084 0.916 9 C -0.013 4.013 10 C -0.139 4.139 11 C 0.012 3.988 12 N -0.358 5.358 13 C 0.357 3.643 14 O -0.516 6.516 15 N -0.380 5.380 16 C 0.158 3.842 17 C -0.114 4.114 18 C -0.060 4.060 19 C -0.194 4.194 20 C 0.494 3.506 21 F -0.154 7.154 22 F -0.137 7.137 23 F -0.141 7.141 24 N -0.007 5.007 25 N -0.165 5.165 26 H 0.297 0.703 27 H 0.072 0.928 28 H 0.013 0.987 29 H 0.010 0.990 30 H 0.084 0.916 31 H 0.087 0.913 32 H 0.075 0.925 33 H 0.067 0.933 34 H 0.250 0.750 35 H 0.232 0.768 36 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges 12.348 -29.248 -8.742 32.929 hybrid contribution -0.263 1.493 0.110 1.520 sum 12.085 -27.754 -8.631 31.478 Atomic orbital electron populations 1.70105 1.07940 1.27927 1.51511 1.26036 0.95773 1.03597 0.94697 0.85455 0.78190 0.77833 0.79290 1.18945 1.21089 1.19057 1.21633 0.93731 0.91982 1.50748 0.91577 1.18932 0.94367 0.92822 0.95179 1.21597 0.98494 0.91638 1.02130 1.21284 0.91592 0.84910 1.00989 1.45668 1.11360 1.04175 1.74575 1.17656 0.85838 0.84003 0.76816 1.90981 1.18455 1.85998 1.56145 1.69127 1.34884 1.11106 1.22926 1.21182 0.88352 0.92503 0.82113 1.21742 0.97202 0.91112 1.01389 1.22305 0.95856 0.98820 0.89013 1.21940 0.99107 0.98677 0.99628 1.17085 0.74468 0.78062 0.81008 1.93262 1.64324 1.88498 1.69286 1.93292 1.39999 1.96323 1.84114 1.93288 1.92769 1.36900 1.91111 1.70727 1.19892 1.00612 1.09424 1.44412 1.29546 1.28781 1.13725 0.70318 0.92753 0.98712 0.98964 0.91567 0.91253 0.92471 0.93282 0.74967 0.76800 0.76294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.38 13.29 21.45 0.28 -57.10 16 2 C 0.00 -0.19 5.46 84.65 0.46 0.27 16 3 Si 0.97 43.96 29.54 68.60 2.03 45.98 16 4 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 5 H -0.29 -12.78 7.11 99.48 0.71 -12.08 16 6 H -0.27 -11.53 7.11 99.48 0.71 -10.83 16 7 C -0.54 -30.52 9.11 25.60 0.23 -30.29 16 8 H 0.07 3.49 7.74 -2.91 -0.02 3.46 16 9 C 0.02 1.30 4.97 29.85 0.15 1.45 16 10 C -0.10 -3.97 5.27 30.59 0.16 -3.81 16 11 C 0.14 5.03 5.67 86.38 0.49 5.52 16 12 N -0.71 -21.83 5.56 -479.37 -2.67 -24.49 16 13 C 0.66 21.61 6.99 179.49 1.26 22.87 16 14 O -0.63 -25.42 16.03 -5.03 -0.08 -25.50 16 15 N -0.63 -16.41 10.50 -323.73 -3.40 -19.81 16 16 C 0.42 7.88 7.43 134.04 1.00 8.88 16 17 C -0.08 -0.68 10.12 22.58 0.23 -0.45 16 18 C -0.03 -0.14 9.70 22.43 0.22 0.07 16 19 C -0.02 -0.21 6.35 43.27 0.27 0.07 16 20 C 0.55 5.61 3.33 71.23 0.24 5.85 16 21 F -0.17 -2.58 16.85 44.97 0.76 -1.82 16 22 F -0.16 -1.34 17.17 44.97 0.77 -0.57 16 23 F -0.16 -1.51 17.29 44.97 0.78 -0.73 16 24 N -0.18 -3.15 10.80 -47.28 -0.51 -3.66 16 25 N -0.43 -8.78 6.08 -55.29 -0.34 -9.12 16 26 H 0.45 10.92 6.73 -220.02 -1.48 9.44 16 27 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 28 H -0.01 -0.31 8.14 -2.39 -0.02 -0.33 16 29 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 30 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 31 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 32 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 33 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 34 H 0.41 10.65 8.57 -92.70 -0.79 9.85 16 35 H 0.22 0.36 8.06 -2.91 -0.02 0.33 16 36 H 0.22 -1.18 8.06 -2.91 -0.02 -1.20 16 Total: -1.00 -76.59 335.16 1.22 -75.37 By element: Atomic # 1 Polarization: 12.13 SS G_CDS: -1.11 Total: 11.02 kcal Atomic # 6 Polarization: 5.72 SS G_CDS: 4.70 Total: 10.42 kcal Atomic # 7 Polarization: -107.55 SS G_CDS: -6.63 Total: -114.17 kcal Atomic # 8 Polarization: -25.42 SS G_CDS: -0.08 Total: -25.50 kcal Atomic # 9 Polarization: -5.43 SS G_CDS: 2.31 Total: -3.13 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.98 kcal Total: -76.59 1.22 -75.37 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000471941394.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.923 kcal (2) G-P(sol) polarization free energy of solvation -76.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds