Wall clock time and date at job start Tue Mar 31 2020 12:40:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09007 * 109.47352 * 2 1 4 4 C 1.50704 * 109.47375 * 120.00126 * 2 1 3 5 5 H 1.07993 * 120.00232 * 119.99387 * 4 2 1 6 6 C 1.37877 * 119.99645 * 300.00052 * 4 2 1 7 7 N 1.31518 * 120.00396 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99775 * 179.97438 * 6 4 2 9 9 H 1.48493 * 109.47177 * 89.99991 * 8 6 4 10 10 H 1.48508 * 109.46949 * 209.99806 * 8 6 4 11 11 H 1.48499 * 109.47197 * 329.99680 * 8 6 4 12 12 N 1.46500 * 109.47172 * 240.00170 * 2 1 3 13 13 C 1.46504 * 119.99712 * 300.00046 * 12 2 1 14 14 C 1.34774 * 120.00394 * 120.00045 * 12 2 1 15 15 O 1.21915 * 119.99695 * 0.02562 * 14 12 2 16 16 N 1.33378 * 120.00391 * 180.02562 * 14 12 2 17 17 C 1.33828 * 119.99949 * 235.38466 * 16 14 12 18 18 C 1.40918 * 120.41066 * 185.28753 * 17 16 14 19 19 C 1.36748 * 117.83332 * 179.97438 * 18 17 16 20 20 C 1.40315 * 118.47925 * 359.97438 * 19 18 17 21 21 C 1.50703 * 119.68839 * 180.02562 * 20 19 18 22 22 F 1.39900 * 109.47166 * 89.99890 * 21 20 19 23 23 F 1.39896 * 109.47140 * 210.00490 * 21 20 19 24 24 F 1.39904 * 109.46882 * 330.00559 * 21 20 19 25 25 N 1.30469 * 120.62405 * 0.02562 * 20 19 18 26 26 N 1.28411 * 122.43396 * 359.69919 * 25 20 19 27 27 H 0.96998 * 119.27720 * 180.31728 * 26 25 20 28 28 H 1.09005 * 109.47090 * 300.00305 * 1 2 3 29 29 H 1.09000 * 109.47198 * 60.00022 * 1 2 3 30 30 H 1.08998 * 109.47498 * 179.97438 * 1 2 3 31 31 H 0.96996 * 120.00265 * 180.02562 * 7 6 4 32 32 H 1.08996 * 109.46814 * 90.00070 * 13 12 2 33 33 H 1.09000 * 109.47211 * 209.99892 * 13 12 2 34 34 H 1.09002 * 109.47298 * 329.99673 * 13 12 2 35 35 H 1.08000 * 121.08262 * 359.97438 * 18 17 16 36 36 H 1.07997 * 120.76301 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6993 -0.2394 2.4827 7 7 0.9435 0.8302 2.6034 8 14 2.3214 -1.1204 4.0079 9 1 3.6297 -0.5459 4.4123 10 1 1.3431 -0.9492 5.1120 11 1 2.4858 -2.5662 3.7119 12 7 2.0183 -0.6906 -1.1962 13 6 1.6643 -2.0932 -1.4280 14 6 2.7932 -0.0356 -2.0834 15 8 3.0881 1.1314 -1.8902 16 7 3.2373 -0.6642 -3.1727 17 6 4.5495 -0.7066 -3.4324 18 6 5.0207 -1.2704 -4.6349 19 6 6.3717 -1.2859 -4.8464 20 6 7.2095 -0.7423 -3.8608 21 6 8.7025 -0.7446 -4.0661 22 9 9.0860 0.4347 -4.7138 23 9 9.3437 -0.8251 -2.8254 24 9 9.0637 -1.8457 -4.8500 25 7 6.7082 -0.2349 -2.7684 26 7 5.4448 -0.2004 -2.5416 27 1 5.1216 0.1920 -1.7155 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 0.7095 1.1618 3.4844 32 1 0.7375 -2.1443 -1.9993 33 1 2.4628 -2.5819 -1.9864 34 1 1.5295 -2.5969 -0.4708 35 1 4.3372 -1.6771 -5.3655 36 1 6.7843 -1.7068 -5.7514 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000471959112.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:40:37 Heat of formation + Delta-G solvation = -101.866999 kcal Electronic energy + Delta-G solvation = -26665.906073 eV Core-core repulsion = 22157.912979 eV Total energy + Delta-G solvation = -4507.993094 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.104 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -51.24999 -48.75260 -48.73029 -43.27346 -40.93485 -37.57239 -36.26578 -35.64128 -34.82678 -32.58027 -31.02076 -28.29202 -27.73550 -27.37685 -26.50693 -24.54875 -23.22373 -21.13905 -20.79301 -19.85107 -19.63710 -18.98898 -18.81000 -18.40242 -17.83544 -17.57259 -16.98339 -16.62116 -16.18195 -15.65108 -15.53018 -15.29758 -15.17079 -15.11958 -14.86768 -14.84616 -14.66170 -14.57630 -14.16176 -13.64624 -13.50047 -13.18130 -13.02671 -12.93060 -12.79267 -12.69370 -12.62117 -12.26243 -12.15056 -12.06466 -11.76953 -11.27621 -10.70038 -10.53404 -9.57422 -9.31356 -8.20061 -6.37470 -0.80406 -0.34299 0.67828 1.38656 1.39617 1.44165 1.50458 1.60069 1.89152 2.32237 2.39970 2.43613 2.71230 3.08218 3.10924 3.23265 3.34836 3.56899 3.96769 4.37865 4.42955 4.50441 4.67025 4.68187 4.79167 4.83276 4.93065 4.99166 5.04399 5.40221 5.51653 5.59581 5.94410 6.07395 6.21453 6.39174 6.69348 6.75129 7.28367 7.48584 8.85035 Molecular weight = 318.10amu Principal moments of inertia in cm(-1) A = 0.017781 B = 0.003398 C = 0.003071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1574.336179 B = 8236.962774 C = 9114.641569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.269 3.731 3 H 0.012 0.988 4 C -0.540 4.540 5 H 0.061 0.939 6 C 0.018 3.982 7 N -0.916 5.916 8 Si 0.968 3.032 9 H -0.280 1.280 10 H -0.279 1.279 11 H -0.262 1.262 12 N -0.589 5.589 13 C 0.099 3.901 14 C 0.646 3.354 15 O -0.651 6.651 16 N -0.620 5.620 17 C 0.409 3.591 18 C -0.083 4.083 19 C -0.036 4.036 20 C -0.024 4.024 21 C 0.554 3.446 22 F -0.166 7.166 23 F -0.173 7.173 24 F -0.149 7.149 25 N -0.186 5.186 26 N -0.433 5.433 27 H 0.446 0.554 28 H 0.072 0.928 29 H 0.015 0.985 30 H 0.046 0.954 31 H 0.266 0.734 32 H 0.057 0.943 33 H 0.076 0.924 34 H 0.070 0.930 35 H 0.216 0.784 36 H 0.223 0.777 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.857 -9.933 -18.065 25.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.166 3.834 3 H 0.030 0.970 4 C -0.579 4.579 5 H 0.079 0.921 6 C -0.182 4.182 7 N -0.554 5.554 8 Si 0.792 3.208 9 H -0.206 1.206 10 H -0.204 1.204 11 H -0.186 1.186 12 N -0.320 5.320 13 C -0.044 4.044 14 C 0.348 3.652 15 O -0.535 6.535 16 N -0.369 5.369 17 C 0.149 3.851 18 C -0.113 4.113 19 C -0.062 4.062 20 C -0.199 4.199 21 C 0.497 3.503 22 F -0.147 7.147 23 F -0.154 7.154 24 F -0.130 7.130 25 N -0.010 5.010 26 N -0.165 5.165 27 H 0.294 0.706 28 H 0.090 0.910 29 H 0.034 0.966 30 H 0.065 0.935 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.094 0.906 34 H 0.089 0.911 35 H 0.233 0.767 36 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges 14.335 -9.037 -17.226 24.164 hybrid contribution -0.132 0.431 1.472 1.539 sum 14.203 -8.607 -15.754 22.891 Atomic orbital electron populations 1.21892 0.97232 1.00124 0.99883 1.18593 0.91679 0.92197 0.80927 0.97045 1.21484 1.32360 1.13172 0.90853 0.92124 1.25741 0.94900 0.95596 1.01987 1.70022 1.36974 1.23777 1.24624 0.85417 0.77867 0.79124 0.78379 1.20635 1.20393 1.18622 1.47847 1.50063 1.13044 1.21015 1.21571 1.00690 0.80426 1.01664 1.17645 0.81369 0.85432 0.80803 1.90917 1.65020 1.19526 1.78067 1.69188 1.09411 1.35934 1.22323 1.21345 0.85335 0.87822 0.90572 1.21734 0.96639 0.99582 0.93324 1.22303 0.91698 0.92734 0.99448 1.21982 0.95711 1.07406 0.94779 1.17015 0.84253 0.74557 0.74482 1.93279 1.92024 1.47827 1.81605 1.93258 1.83481 1.95899 1.42759 1.93270 1.92323 1.53021 1.74402 1.70658 0.98908 1.10397 1.21016 1.44410 1.01173 1.48916 1.21984 0.70642 0.90953 0.96599 0.93477 0.92458 0.92446 0.90573 0.91121 0.76745 0.76080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.74 8.97 71.98 0.65 -6.09 16 2 C 0.27 14.57 2.64 44.25 0.12 14.68 16 3 H 0.01 0.74 6.89 -2.38 -0.02 0.72 16 4 C -0.54 -29.74 7.99 25.60 0.20 -29.53 16 5 H 0.06 3.23 7.33 -2.91 -0.02 3.21 16 6 C 0.02 0.98 5.30 84.65 0.45 1.43 16 7 N -0.92 -53.08 11.32 21.45 0.24 -52.83 16 8 Si 0.97 43.02 29.54 68.60 2.03 45.05 16 9 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 10 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 11 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16 12 N -0.59 -27.27 2.75 -845.81 -2.33 -29.60 16 13 C 0.10 3.62 9.40 127.77 1.20 4.82 16 14 C 0.65 29.63 6.85 179.49 1.23 30.86 16 15 O -0.65 -34.91 15.14 -5.04 -0.08 -34.98 16 16 N -0.62 -22.05 9.14 -323.73 -2.96 -25.00 16 17 C 0.41 11.23 7.37 134.05 0.99 12.22 16 18 C -0.08 -1.20 10.12 22.58 0.23 -0.97 16 19 C -0.04 -0.35 9.48 22.43 0.21 -0.14 16 20 C -0.02 -0.41 6.38 43.27 0.28 -0.13 16 21 C 0.55 8.19 3.44 71.24 0.24 8.43 16 22 F -0.17 -2.62 17.30 44.97 0.78 -1.84 16 23 F -0.17 -3.30 17.04 44.97 0.77 -2.53 16 24 F -0.15 -1.57 16.49 44.97 0.74 -0.83 16 25 N -0.19 -4.61 11.02 -47.28 -0.52 -5.13 16 26 N -0.43 -12.92 6.01 -55.29 -0.33 -13.25 16 27 H 0.45 16.22 6.74 -220.02 -1.48 14.74 16 28 H 0.07 4.00 6.07 -2.38 -0.01 3.98 16 29 H 0.01 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.05 2.18 7.67 -2.39 -0.02 2.16 16 31 H 0.27 14.57 8.31 -92.71 -0.77 13.79 16 32 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 33 H 0.08 2.40 7.31 -2.39 -0.02 2.38 16 34 H 0.07 2.64 7.02 -2.39 -0.02 2.63 16 35 H 0.22 1.58 8.06 -2.91 -0.02 1.56 16 36 H 0.22 -0.13 7.66 -2.91 -0.02 -0.15 16 Total: -1.00 -74.98 324.35 3.82 -71.16 By element: Atomic # 1 Polarization: 14.54 SS G_CDS: -0.32 Total: 14.22 kcal Atomic # 6 Polarization: 29.78 SS G_CDS: 5.80 Total: 35.57 kcal Atomic # 7 Polarization: -119.92 SS G_CDS: -5.90 Total: -125.81 kcal Atomic # 8 Polarization: -34.91 SS G_CDS: -0.08 Total: -34.98 kcal Atomic # 9 Polarization: -7.49 SS G_CDS: 2.29 Total: -5.21 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 2.03 Total: 45.05 kcal Total: -74.98 3.82 -71.16 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000471959112.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.705 kcal (2) G-P(sol) polarization free energy of solvation -74.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds