Wall clock time and date at job start Tue Mar 31 2020 12:01:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86801 * 120.00046 * 2 1 4 4 H 1.48503 * 109.47224 * 270.00190 * 3 2 1 5 5 H 1.48494 * 109.47012 * 30.00277 * 3 2 1 6 6 H 1.48504 * 109.46787 * 150.00409 * 3 2 1 7 7 C 1.37884 * 119.99955 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99933 * 359.97438 * 7 2 1 9 9 C 1.50692 * 119.99849 * 179.97438 * 7 2 1 10 10 C 1.53006 * 109.46959 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47122 * 179.97438 * 10 9 7 12 12 N 1.46496 * 109.47369 * 179.97438 * 11 10 9 13 13 C 1.30401 * 119.99957 * 119.99749 * 12 11 10 14 14 N 1.38085 * 127.14425 * 180.02562 * 13 12 11 15 15 H 0.97001 * 127.99811 * 359.71609 * 14 13 12 16 16 C 1.38864 * 103.99195 * 179.74252 * 14 13 12 17 17 C 1.48078 * 126.41513 * 179.97438 * 16 14 13 18 18 C 1.39461 * 120.13394 * 359.73133 * 17 16 14 19 19 C 1.37991 * 119.86579 * 179.71890 * 18 17 16 20 20 C 1.38341 * 120.13091 * 0.55238 * 19 18 17 21 21 N 1.48012 * 119.86315 * 179.74373 * 20 19 18 22 22 O 1.21803 * 120.00001 * 179.97438 * 21 20 19 23 23 O 1.21802 * 120.00735 * 359.97438 * 21 20 19 24 24 C 1.38336 * 120.26794 * 359.71966 * 20 19 18 25 25 C 1.37988 * 120.13628 * 0.02562 * 24 20 19 26 26 N 1.29805 * 107.16715 * 0.02562 * 16 14 13 27 27 O 1.20931 * 112.24496 * 359.97438 * 26 16 14 28 28 H 0.97007 * 120.00029 * 359.97438 * 1 2 3 29 29 H 1.09000 * 109.47503 * 59.99730 * 9 7 2 30 30 H 1.08998 * 109.47495 * 299.99534 * 9 7 2 31 31 H 1.09000 * 109.46926 * 59.99754 * 10 9 7 32 32 H 1.08999 * 109.46941 * 299.99690 * 10 9 7 33 33 H 1.09005 * 109.46879 * 60.00562 * 11 10 9 34 34 H 1.08998 * 109.47633 * 300.00096 * 11 10 9 35 35 H 1.08007 * 120.06499 * 359.97438 * 18 17 16 36 36 H 1.07995 * 119.93131 * 180.26636 * 19 18 17 37 37 H 1.08000 * 119.93136 * 179.97438 * 24 20 19 38 38 H 1.07994 * 120.06894 * 180.02562 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5114 -1.1941 -0.0011 10 6 4.0214 -2.6366 -0.0010 11 6 5.5514 -2.6367 -0.0022 12 7 6.0398 -4.0178 -0.0015 13 6 6.7887 -4.4451 -0.9798 14 7 7.3258 -5.7085 -1.1282 15 1 7.2358 -6.4693 -0.5333 16 6 8.0252 -5.6374 -2.3257 17 6 8.7965 -6.7311 -2.9594 18 6 8.8745 -7.9804 -2.3445 19 6 9.5900 -8.9974 -2.9428 20 6 10.2387 -8.7762 -4.1445 21 7 11.0092 -9.8696 -4.7782 22 8 11.5809 -9.6778 -5.8365 23 8 11.0717 -10.9612 -4.2416 24 6 10.1697 -7.5375 -4.7565 25 6 9.4530 -6.5143 -4.1706 26 7 7.8770 -4.4324 -2.7850 27 8 7.1949 -3.7465 -2.0593 28 1 -0.4850 0.8401 0.0004 29 1 3.8751 -0.6804 0.8888 30 1 3.8745 -0.6801 -0.8911 31 1 3.6577 -3.1507 -0.8907 32 1 3.6585 -3.1502 0.8893 33 1 5.9154 -2.1226 0.8874 34 1 5.9141 -2.1232 -0.8926 35 1 8.3724 -8.1527 -1.4039 36 1 9.6475 -9.9664 -2.4696 37 1 10.6786 -7.3708 -5.6944 38 1 9.3995 -5.5478 -4.6495 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000486967417.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:01:47 Heat of formation + Delta-G solvation = 98.966816 kcal Electronic energy + Delta-G solvation = -24184.969593 eV Core-core repulsion = 20227.542047 eV Total energy + Delta-G solvation = -3957.427546 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.116 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -45.22818 -42.71460 -40.24584 -37.08687 -36.83005 -36.34027 -34.06022 -32.92272 -32.34452 -31.76825 -30.44709 -27.59540 -27.13982 -25.07126 -24.21291 -23.52046 -22.89897 -21.24437 -20.09262 -20.03857 -19.26765 -18.93382 -18.20130 -18.04498 -17.64165 -16.68771 -16.15778 -15.96071 -15.62766 -15.38450 -14.68557 -14.47889 -14.28786 -14.08319 -13.71950 -13.11990 -12.96905 -12.78265 -12.49528 -12.38105 -12.08124 -11.93146 -11.74414 -11.68067 -11.63648 -11.14727 -10.87252 -10.26609 -10.24714 -10.09318 -9.79882 -9.73500 -9.56116 -9.20806 -8.54181 -8.19967 -6.04506 -4.02639 -1.05291 0.12377 0.41860 0.78476 1.44382 1.69571 1.97811 2.56448 2.72497 3.23870 3.30648 3.37897 3.41397 3.58588 3.68081 3.95496 3.96166 4.25194 4.44113 4.44928 4.51452 4.84324 4.90049 4.91834 5.09117 5.22316 5.29342 5.40310 5.60801 5.79908 5.80508 6.03440 6.35456 6.49332 6.65610 6.87013 7.07925 7.28856 7.39267 7.51687 7.78510 7.93771 8.53925 9.00405 9.57674 11.08938 Molecular weight = 318.12amu Principal moments of inertia in cm(-1) A = 0.039167 B = 0.001809 C = 0.001787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 714.715737 B =15477.612593 C =15668.269543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.065 3.935 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.265 1.265 7 C -0.520 4.520 8 H 0.071 0.929 9 C -0.013 4.013 10 C -0.094 4.094 11 C 0.060 3.940 12 N -0.523 5.523 13 C 0.437 3.563 14 N -0.645 5.645 15 H 0.453 0.547 16 C 0.251 3.749 17 C 0.037 3.963 18 C -0.095 4.095 19 C -0.048 4.048 20 C -0.034 4.034 21 N 0.025 4.975 22 O -0.153 6.153 23 O -0.154 6.154 24 C -0.048 4.048 25 C -0.077 4.077 26 N -0.313 5.313 27 O -0.013 6.013 28 H 0.263 0.737 29 H 0.018 0.982 30 H 0.012 0.988 31 H 0.051 0.949 32 H 0.063 0.937 33 H 0.084 0.916 34 H 0.050 0.950 35 H 0.152 0.848 36 H 0.163 0.837 37 H 0.164 0.836 38 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.473 -18.660 -7.120 31.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.136 4.136 3 Si 0.708 3.292 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.190 1.190 7 C -0.558 4.558 8 H 0.090 0.910 9 C -0.051 4.051 10 C -0.132 4.132 11 C -0.068 4.068 12 N -0.270 5.270 13 C 0.123 3.877 14 N -0.295 5.295 15 H 0.299 0.701 16 C -0.018 4.018 17 C 0.034 3.966 18 C -0.115 4.115 19 C -0.067 4.067 20 C -0.117 4.117 21 N 0.546 4.454 22 O -0.370 6.370 23 O -0.371 6.371 24 C -0.067 4.067 25 C -0.098 4.098 26 N -0.042 5.042 27 O -0.050 6.050 28 H 0.073 0.927 29 H 0.036 0.964 30 H 0.030 0.970 31 H 0.070 0.930 32 H 0.082 0.918 33 H 0.102 0.898 34 H 0.069 0.931 35 H 0.169 0.831 36 H 0.181 0.819 37 H 0.182 0.818 38 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 23.855 -17.385 -7.028 30.343 hybrid contribution 0.346 0.259 0.236 0.492 sum 24.201 -17.125 -6.793 30.415 Atomic orbital electron populations 1.69916 1.06307 1.26875 1.51182 1.25040 0.94752 0.99199 0.94573 0.86765 0.80374 0.83562 0.78519 1.20287 1.21373 1.18956 1.21118 0.89403 0.94498 1.50780 0.91047 1.19565 0.97287 0.91871 0.96369 1.21476 0.89917 1.00001 1.01784 1.22191 0.98219 0.84713 1.01705 1.72812 1.16604 1.20481 1.17152 1.23578 0.93961 0.82995 0.87194 1.43037 1.50654 1.13038 1.22773 0.70118 1.22257 0.98710 0.93859 0.86971 1.17754 0.94647 0.90036 0.94126 1.21129 0.99005 0.90625 1.00768 1.20957 0.92640 1.01269 0.91855 1.21320 1.03480 0.89020 0.97928 1.43596 0.99465 1.01896 1.00440 1.94573 1.44582 1.88428 1.09416 1.94568 1.66304 1.10896 1.65320 1.21051 0.95873 0.89349 1.00423 1.21265 0.94692 1.00317 0.93501 1.73695 1.11796 1.01808 1.16873 1.85584 1.56065 1.34405 1.28911 0.92744 0.96382 0.97003 0.92979 0.91810 0.89755 0.93120 0.83051 0.81906 0.81817 0.81965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.09 13.96 55.43 0.77 -27.32 16 2 C 0.07 1.92 5.47 -17.82 -0.10 1.83 16 3 Si 0.88 21.79 27.47 -169.99 -4.67 17.12 16 4 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 6 H -0.26 -6.26 6.54 56.52 0.37 -5.89 16 7 C -0.52 -15.02 9.66 -34.44 -0.33 -15.35 16 8 H 0.07 2.22 7.99 -52.49 -0.42 1.80 16 9 C -0.01 -0.31 4.04 -27.88 -0.11 -0.42 16 10 C -0.09 -1.90 5.48 -26.73 -0.15 -2.05 16 11 C 0.06 1.01 6.39 -4.04 -0.03 0.99 16 12 N -0.52 -7.95 10.63 -62.32 -0.66 -8.62 16 13 C 0.44 5.58 9.07 -87.63 -0.79 4.78 16 14 N -0.65 -5.34 6.42 -11.82 -0.08 -5.42 16 15 H 0.45 2.23 8.30 -40.82 -0.34 1.89 16 16 C 0.25 2.03 7.88 -153.61 -1.21 0.82 16 17 C 0.04 0.19 5.87 -104.95 -0.62 -0.42 16 18 C -0.09 -0.31 9.71 -39.22 -0.38 -0.70 16 19 C -0.05 -0.19 9.54 -39.63 -0.38 -0.57 16 20 C -0.03 -0.20 6.86 -79.88 -0.55 -0.75 16 21 N 0.03 0.22 4.45 34.00 0.15 0.37 16 22 O -0.15 -1.45 18.44 -29.46 -0.54 -2.00 16 23 O -0.15 -1.44 18.44 -29.46 -0.54 -1.99 16 24 C -0.05 -0.22 9.54 -39.64 -0.38 -0.60 16 25 C -0.08 -0.36 9.69 -39.22 -0.38 -0.74 16 26 N -0.31 -3.44 11.65 32.36 0.38 -3.06 16 27 O -0.01 -0.18 10.33 14.96 0.15 -0.02 16 28 H 0.26 7.62 8.31 -40.82 -0.34 7.29 16 29 H 0.02 0.43 7.20 -51.93 -0.37 0.05 16 30 H 0.01 0.28 7.57 -51.93 -0.39 -0.12 16 31 H 0.05 1.09 8.14 -51.93 -0.42 0.66 16 32 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 33 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 34 H 0.05 0.83 7.16 -51.93 -0.37 0.46 16 35 H 0.15 0.11 7.34 -52.48 -0.39 -0.28 16 36 H 0.16 0.42 7.60 -52.49 -0.40 0.02 16 37 H 0.16 0.53 7.60 -52.49 -0.40 0.13 16 38 H 0.16 0.64 7.87 -52.49 -0.41 0.23 16 LS Contribution 343.10 15.07 5.17 5.17 Total: -1.00 -34.65 343.10 -9.20 -43.84 By element: Atomic # 1 Polarization: -0.97 SS G_CDS: -3.93 Total: -4.90 kcal Atomic # 6 Polarization: -7.79 SS G_CDS: -5.40 Total: -13.19 kcal Atomic # 7 Polarization: -44.60 SS G_CDS: 0.56 Total: -44.04 kcal Atomic # 8 Polarization: -3.08 SS G_CDS: -0.93 Total: -4.01 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -4.67 Total: 17.12 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -34.65 -9.20 -43.84 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000486967417.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.809 kcal (2) G-P(sol) polarization free energy of solvation -34.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.842 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds