Wall clock time and date at job start Tue Mar 31 2020 12:01:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86801 * 120.00046 * 2 1 4 4 H 1.48503 * 109.47224 * 270.00190 * 3 2 1 5 5 H 1.48494 * 109.47012 * 30.00277 * 3 2 1 6 6 H 1.48504 * 109.46787 * 150.00409 * 3 2 1 7 7 C 1.37884 * 119.99955 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99933 * 359.97438 * 7 2 1 9 9 C 1.50692 * 119.99849 * 179.97438 * 7 2 1 10 10 C 1.53006 * 109.46959 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47122 * 179.97438 * 10 9 7 12 12 N 1.46496 * 109.47369 * 179.97438 * 11 10 9 13 13 C 1.30401 * 119.99957 * 119.99749 * 12 11 10 14 14 N 1.38085 * 127.14425 * 180.02562 * 13 12 11 15 15 H 0.97001 * 127.99811 * 359.71609 * 14 13 12 16 16 C 1.38864 * 103.99195 * 179.74252 * 14 13 12 17 17 C 1.48078 * 126.41513 * 179.97438 * 16 14 13 18 18 C 1.39461 * 120.13394 * 359.73133 * 17 16 14 19 19 C 1.37991 * 119.86579 * 179.71890 * 18 17 16 20 20 C 1.38341 * 120.13091 * 0.55238 * 19 18 17 21 21 N 1.48012 * 119.86315 * 179.74373 * 20 19 18 22 22 O 1.21803 * 120.00001 * 179.97438 * 21 20 19 23 23 O 1.21802 * 120.00735 * 359.97438 * 21 20 19 24 24 C 1.38336 * 120.26794 * 359.71966 * 20 19 18 25 25 C 1.37988 * 120.13628 * 0.02562 * 24 20 19 26 26 N 1.29805 * 107.16715 * 0.02562 * 16 14 13 27 27 O 1.20931 * 112.24496 * 359.97438 * 26 16 14 28 28 H 0.97007 * 120.00029 * 359.97438 * 1 2 3 29 29 H 1.09000 * 109.47503 * 59.99730 * 9 7 2 30 30 H 1.08998 * 109.47495 * 299.99534 * 9 7 2 31 31 H 1.09000 * 109.46926 * 59.99754 * 10 9 7 32 32 H 1.08999 * 109.46941 * 299.99690 * 10 9 7 33 33 H 1.09005 * 109.46879 * 60.00562 * 11 10 9 34 34 H 1.08998 * 109.47633 * 300.00096 * 11 10 9 35 35 H 1.08007 * 120.06499 * 359.97438 * 18 17 16 36 36 H 1.07995 * 119.93131 * 180.26636 * 19 18 17 37 37 H 1.08000 * 119.93136 * 179.97438 * 24 20 19 38 38 H 1.07994 * 120.06894 * 180.02562 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5114 -1.1941 -0.0011 10 6 4.0214 -2.6366 -0.0010 11 6 5.5514 -2.6367 -0.0022 12 7 6.0398 -4.0178 -0.0015 13 6 6.7887 -4.4451 -0.9798 14 7 7.3258 -5.7085 -1.1282 15 1 7.2358 -6.4693 -0.5333 16 6 8.0252 -5.6374 -2.3257 17 6 8.7965 -6.7311 -2.9594 18 6 8.8745 -7.9804 -2.3445 19 6 9.5900 -8.9974 -2.9428 20 6 10.2387 -8.7762 -4.1445 21 7 11.0092 -9.8696 -4.7782 22 8 11.5809 -9.6778 -5.8365 23 8 11.0717 -10.9612 -4.2416 24 6 10.1697 -7.5375 -4.7565 25 6 9.4530 -6.5143 -4.1706 26 7 7.8770 -4.4324 -2.7850 27 8 7.1949 -3.7465 -2.0593 28 1 -0.4850 0.8401 0.0004 29 1 3.8751 -0.6804 0.8888 30 1 3.8745 -0.6801 -0.8911 31 1 3.6577 -3.1507 -0.8907 32 1 3.6585 -3.1502 0.8893 33 1 5.9154 -2.1226 0.8874 34 1 5.9141 -2.1232 -0.8926 35 1 8.3724 -8.1527 -1.4039 36 1 9.6475 -9.9664 -2.4696 37 1 10.6786 -7.3708 -5.6944 38 1 9.3995 -5.5478 -4.6495 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000486967417.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:01:46 Heat of formation + Delta-G solvation = 75.320125 kcal Electronic energy + Delta-G solvation = -24185.994991 eV Core-core repulsion = 20227.542047 eV Total energy + Delta-G solvation = -3958.452943 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.116 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -46.06654 -43.30336 -40.67955 -37.82327 -37.72788 -37.35293 -35.62851 -34.16592 -33.10199 -32.71305 -31.54218 -28.79522 -28.20372 -25.88885 -25.20244 -24.23136 -23.82399 -22.29536 -21.65702 -20.54413 -19.96970 -19.65138 -19.07927 -18.93838 -18.63904 -18.23394 -17.04738 -16.66082 -16.28011 -16.22586 -15.97464 -15.70274 -14.98130 -14.83217 -14.74527 -14.32847 -14.27501 -13.94014 -13.64499 -13.40532 -13.11968 -12.82593 -12.76381 -12.60936 -12.42780 -12.38116 -12.32846 -11.89838 -11.75011 -11.56522 -11.36721 -10.77998 -10.75808 -10.67505 -10.57352 -9.19752 -8.29831 -6.34688 -1.59484 -0.20686 -0.18837 0.26499 0.80808 0.89103 0.99096 1.36988 1.38955 1.51389 1.93224 2.15384 2.36762 2.51633 3.05342 3.18669 3.35005 3.40979 3.47644 3.57618 3.88469 4.05594 4.17643 4.23668 4.42359 4.48643 4.56228 4.57884 4.59885 4.80048 4.83891 4.97426 4.99577 5.05720 5.26388 5.46893 5.55279 5.64318 5.78930 6.27224 6.38829 6.52613 6.73068 7.04089 7.29788 8.87056 Molecular weight = 318.12amu Principal moments of inertia in cm(-1) A = 0.039167 B = 0.001809 C = 0.001787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 714.715737 B =15477.612593 C =15668.269543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.001 3.999 3 Si 0.954 3.046 4 H -0.266 1.266 5 H -0.283 1.283 6 H -0.242 1.242 7 C -0.536 4.536 8 H 0.028 0.972 9 C -0.010 4.010 10 C -0.084 4.084 11 C 0.073 3.927 12 N -0.555 5.555 13 C 0.444 3.556 14 N -0.624 5.624 15 H 0.469 0.531 16 C 0.283 3.717 17 C 0.024 3.976 18 C -0.075 4.075 19 C -0.044 4.044 20 C -0.042 4.042 21 N 0.026 4.974 22 O -0.178 6.178 23 O -0.168 6.168 24 C -0.046 4.046 25 C -0.071 4.071 26 N -0.343 5.343 27 O -0.040 6.040 28 H 0.267 0.733 29 H 0.028 0.972 30 H 0.021 0.979 31 H 0.037 0.963 32 H 0.052 0.948 33 H 0.092 0.908 34 H 0.052 0.948 35 H 0.184 0.816 36 H 0.181 0.819 37 H 0.175 0.825 38 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.817 -18.891 -6.924 33.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.195 4.195 3 Si 0.777 3.223 4 H -0.191 1.191 5 H -0.209 1.209 6 H -0.165 1.165 7 C -0.574 4.574 8 H 0.046 0.954 9 C -0.048 4.048 10 C -0.122 4.122 11 C -0.056 4.056 12 N -0.304 5.304 13 C 0.130 3.870 14 N -0.275 5.275 15 H 0.319 0.681 16 C 0.013 3.987 17 C 0.022 3.978 18 C -0.095 4.095 19 C -0.063 4.063 20 C -0.126 4.126 21 N 0.543 4.457 22 O -0.391 6.391 23 O -0.384 6.384 24 C -0.065 4.065 25 C -0.091 4.091 26 N -0.077 5.077 27 O -0.070 6.070 28 H 0.075 0.925 29 H 0.046 0.954 30 H 0.039 0.961 31 H 0.056 0.944 32 H 0.071 0.929 33 H 0.110 0.890 34 H 0.071 0.929 35 H 0.201 0.799 36 H 0.198 0.802 37 H 0.192 0.808 38 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 26.232 -17.661 -6.844 32.355 hybrid contribution -0.360 0.102 0.100 0.387 sum 25.872 -17.559 -6.744 31.987 Atomic orbital electron populations 1.70077 1.08399 1.28235 1.52583 1.26085 0.95696 1.03758 0.93972 0.85600 0.79637 0.77790 0.79294 1.19138 1.20882 1.16515 1.21484 0.92199 0.93060 1.50645 0.95402 1.19503 0.93867 0.94463 0.96959 1.21262 0.93044 0.97379 1.00530 1.21852 0.95163 0.86380 1.02207 1.72749 1.19395 1.19411 1.18893 1.23759 0.92730 0.84025 0.86499 1.43099 1.49318 1.12135 1.22902 0.68120 1.22672 0.96640 0.93510 0.85838 1.17814 0.95312 0.89986 0.94673 1.21420 0.97693 0.89138 1.01298 1.21209 0.91822 1.02223 0.91022 1.21542 1.03798 0.88504 0.98729 1.43943 0.99290 1.02282 1.00228 1.94566 1.45662 1.88645 1.10251 1.94550 1.66653 1.11888 1.65287 1.21153 0.95758 0.88809 1.00807 1.21331 0.94054 1.00501 0.93232 1.73701 1.13593 1.03021 1.17361 1.85578 1.56871 1.35376 1.29189 0.92462 0.95396 0.96103 0.94446 0.92901 0.88994 0.92929 0.79889 0.80175 0.80799 0.81387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.71 13.96 21.45 0.30 -60.41 16 2 C 0.00 0.08 5.47 84.66 0.46 0.55 16 3 Si 0.95 44.48 27.47 68.60 1.88 46.37 16 4 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 5 H -0.28 -12.90 7.11 99.48 0.71 -12.20 16 6 H -0.24 -10.32 6.54 99.48 0.65 -9.66 16 7 C -0.54 -31.79 9.66 25.60 0.25 -31.54 16 8 H 0.03 1.82 7.99 -2.91 -0.02 1.80 16 9 C -0.01 -0.47 4.04 29.85 0.12 -0.35 16 10 C -0.08 -3.44 5.48 30.60 0.17 -3.27 16 11 C 0.07 2.40 6.39 86.38 0.55 2.95 16 12 N -0.55 -16.27 10.63 -465.32 -4.95 -21.22 16 13 C 0.44 10.64 9.07 179.30 1.63 12.27 16 14 N -0.62 -8.58 6.42 -302.35 -1.94 -10.52 16 15 H 0.47 2.92 8.30 -92.71 -0.77 2.15 16 16 C 0.28 3.80 7.88 136.26 1.07 4.88 16 17 C 0.02 0.18 5.87 -20.08 -0.12 0.06 16 18 C -0.08 -0.20 9.71 22.51 0.22 0.02 16 19 C -0.04 -0.21 9.54 22.24 0.21 0.00 16 20 C -0.04 -0.40 6.86 36.42 0.25 -0.16 16 21 N 0.03 0.42 4.45 -46.35 -0.21 0.21 16 22 O -0.18 -3.30 18.44 18.88 0.35 -2.96 16 23 O -0.17 -2.97 18.44 18.88 0.35 -2.62 16 24 C -0.05 -0.33 9.54 22.23 0.21 -0.12 16 25 C -0.07 -0.48 9.69 22.50 0.22 -0.26 16 26 N -0.34 -6.97 11.65 -52.49 -0.61 -7.59 16 27 O -0.04 -1.01 10.33 63.68 0.66 -0.35 16 28 H 0.27 15.77 8.31 -92.70 -0.77 15.00 16 29 H 0.03 1.27 7.20 -2.39 -0.02 1.25 16 30 H 0.02 0.95 7.57 -2.39 -0.02 0.93 16 31 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 32 H 0.05 2.24 8.14 -2.39 -0.02 2.22 16 33 H 0.09 2.81 8.14 -2.38 -0.02 2.79 16 34 H 0.05 1.67 7.16 -2.39 -0.02 1.66 16 35 H 0.18 -0.70 7.34 -2.91 -0.02 -0.72 16 36 H 0.18 0.28 7.60 -2.91 -0.02 0.25 16 37 H 0.17 0.85 7.60 -2.91 -0.02 0.83 16 38 H 0.17 0.98 7.87 -2.91 -0.02 0.96 16 Total: -1.00 -77.80 343.10 1.38 -76.42 By element: Atomic # 1 Polarization: -2.67 SS G_CDS: 0.30 Total: -2.37 kcal Atomic # 6 Polarization: -20.21 SS G_CDS: 5.24 Total: -14.96 kcal Atomic # 7 Polarization: -92.12 SS G_CDS: -7.41 Total: -99.53 kcal Atomic # 8 Polarization: -7.28 SS G_CDS: 1.35 Total: -5.92 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 1.88 Total: 46.37 kcal Total: -77.80 1.38 -76.42 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000486967417.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.738 kcal (2) G-P(sol) polarization free energy of solvation -77.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.418 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds