Wall clock time and date at job start Tue Mar 31 2020 11:50:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34857 * 117.00018 * 2 1 4 4 O 1.21584 * 120.00316 * 359.97438 * 3 2 1 5 5 C 1.46805 * 119.99785 * 179.97438 * 3 2 1 6 6 C 1.35907 * 125.13807 * 179.97438 * 5 3 2 7 7 C 1.46230 * 106.07762 * 180.02562 * 6 5 3 8 8 C 1.39724 * 134.07891 * 180.02562 * 7 6 5 9 9 C 1.38175 * 119.53758 * 179.97438 * 8 7 6 10 10 N 1.40139 * 119.92009 * 179.97438 * 9 8 7 11 11 C 1.34775 * 119.99761 * 213.26255 * 10 9 8 12 12 O 1.21597 * 120.00043 * 5.31259 * 11 10 9 13 13 N 1.34775 * 120.00377 * 185.31200 * 11 10 9 14 14 C 1.46500 * 120.00811 * 179.97438 * 13 11 10 15 15 C 1.50696 * 109.47772 * 180.02562 * 14 13 11 16 16 H 1.08001 * 119.99626 * 0.02562 * 15 14 13 17 17 C 1.37877 * 120.00238 * 180.02562 * 15 14 13 18 18 N 1.31511 * 119.99856 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99984 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.46839 * 89.99951 * 19 17 15 21 21 H 1.48500 * 109.47011 * 210.00113 * 19 17 15 22 22 H 1.48498 * 109.46838 * 330.00146 * 19 17 15 23 23 C 1.39418 * 120.15517 * 359.71223 * 9 8 7 24 24 C 1.37684 * 120.68566 * 0.56644 * 23 9 8 25 25 C 1.39043 * 120.09202 * 359.45055 * 24 23 9 26 26 O 1.34823 * 133.05273 * 180.27841 * 25 24 23 27 27 H 1.09002 * 109.47389 * 300.00488 * 1 2 3 28 28 H 1.09002 * 109.46988 * 59.99923 * 1 2 3 29 29 H 1.08996 * 109.47308 * 179.97438 * 1 2 3 30 30 H 1.08005 * 126.95787 * 0.02562 * 6 5 3 31 31 H 1.08001 * 120.23085 * 0.02562 * 8 7 6 32 32 H 0.96993 * 120.00378 * 33.25933 * 10 9 8 33 33 H 0.97003 * 119.99697 * 0.02562 * 13 11 10 34 34 H 1.09002 * 109.46838 * 300.00637 * 14 13 11 35 35 H 1.09002 * 109.46674 * 59.99599 * 14 13 11 36 36 H 0.97003 * 119.99660 * 179.97438 * 18 17 15 37 37 H 1.07998 * 119.65810 * 180.29681 * 23 9 8 38 38 H 1.07995 * 119.95526 * 179.72948 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0642 1.2016 0.0000 4 8 1.4021 2.2213 -0.0005 5 6 3.5303 1.2784 0.0006 6 6 4.2533 2.4291 0.0001 7 6 5.6585 2.0245 0.0004 8 6 6.8703 2.7202 0.0006 9 6 8.0596 2.0167 0.0013 10 7 9.2796 2.7063 0.0010 11 6 10.3465 2.1877 -0.6387 12 8 10.2267 1.1716 -1.2958 13 7 11.5463 2.7953 -0.5500 14 6 12.7062 2.2313 -1.2448 15 6 13.9150 3.0930 -0.9856 16 1 13.8281 3.9726 -0.3649 17 6 15.1320 2.7586 -1.5407 18 7 15.2377 1.6878 -2.2968 19 14 16.6305 3.8263 -1.2187 20 1 17.3320 3.3411 -0.0031 21 1 17.5495 3.7536 -2.3829 22 1 16.2011 5.2331 -1.0141 23 6 8.0486 0.6226 0.0079 24 6 6.8592 -0.0708 0.0020 25 6 5.6510 0.6175 0.0009 26 8 4.3636 0.2170 0.0006 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 3.8680 3.4381 -0.0003 31 1 6.8773 3.8002 0.0010 32 1 9.3561 3.5567 0.4610 33 1 11.6419 3.6056 -0.0255 34 1 12.8943 1.2223 -0.8779 35 1 12.5068 2.1971 -2.3159 36 1 16.0938 1.4527 -2.6877 37 1 8.9829 0.0809 0.0132 38 1 6.8645 -1.1507 0.0028 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000488369817.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:50:15 Heat of formation + Delta-G solvation = -75.220601 kcal Electronic energy + Delta-G solvation = -24549.423050 eV Core-core repulsion = 20552.149419 eV Total energy + Delta-G solvation = -3997.273630 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.109 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.71129 -40.64007 -40.04322 -37.73705 -36.99597 -34.47207 -34.13685 -33.08367 -32.38819 -30.24037 -29.54760 -28.09588 -27.04627 -24.68640 -23.42872 -22.30966 -22.04068 -21.12807 -20.39204 -18.90700 -18.30044 -17.70320 -17.37960 -17.17691 -17.12500 -16.08145 -16.02793 -15.33852 -15.01158 -14.56961 -14.35957 -14.26820 -13.92970 -13.72264 -13.55892 -13.39808 -13.19297 -12.96541 -12.62582 -12.59534 -12.05761 -11.94110 -11.33875 -11.29636 -11.27512 -11.02322 -10.95223 -10.50722 -10.36753 -10.12196 -9.61957 -9.45920 -8.81932 -8.53283 -8.18162 -7.80143 -6.22192 -4.29535 0.15895 1.17191 1.47911 1.84346 2.50682 2.57319 3.00474 3.20956 3.27765 3.29922 3.38646 3.83040 4.15447 4.26893 4.37627 4.62585 4.67177 4.73621 4.75113 4.75580 5.01464 5.08714 5.14336 5.25848 5.28761 5.58993 5.69230 5.76465 5.83082 6.05103 6.18471 6.31048 6.60609 6.90853 6.96720 7.19746 7.29802 7.41922 7.44981 7.73430 7.91942 8.59557 8.75387 9.07628 9.37439 10.87849 Molecular weight = 318.11amu Principal moments of inertia in cm(-1) A = 0.054002 B = 0.001918 C = 0.001872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 518.373761 B =14597.642831 C =14953.895157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.345 6.345 3 C 0.552 3.448 4 O -0.485 6.485 5 C -0.023 4.023 6 C -0.089 4.089 7 C -0.130 4.130 8 C -0.102 4.102 9 C 0.174 3.826 10 N -0.694 5.694 11 C 0.690 3.310 12 O -0.582 6.582 13 N -0.719 5.719 14 C 0.265 3.735 15 C -0.545 4.545 16 H 0.063 0.937 17 C 0.065 3.935 18 N -0.884 5.884 19 Si 0.905 3.095 20 H -0.278 1.278 21 H -0.284 1.284 22 H -0.273 1.273 23 C -0.070 4.070 24 C -0.093 4.093 25 C 0.058 3.942 26 O -0.174 6.174 27 H 0.067 0.933 28 H 0.067 0.933 29 H 0.106 0.894 30 H 0.172 0.828 31 H 0.135 0.865 32 H 0.405 0.595 33 H 0.389 0.611 34 H 0.028 0.972 35 H 0.028 0.972 36 H 0.267 0.733 37 H 0.157 0.843 38 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.082 -0.026 7.466 26.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.261 6.261 3 C 0.397 3.603 4 O -0.374 6.374 5 C -0.072 4.072 6 C -0.109 4.109 7 C -0.131 4.131 8 C -0.124 4.124 9 C 0.077 3.923 10 N -0.343 5.343 11 C 0.390 3.610 12 O -0.460 6.460 13 N -0.371 5.371 14 C 0.144 3.856 15 C -0.584 4.584 16 H 0.081 0.919 17 C -0.139 4.139 18 N -0.521 5.521 19 Si 0.732 3.268 20 H -0.204 1.204 21 H -0.210 1.210 22 H -0.198 1.198 23 C -0.090 4.090 24 C -0.112 4.112 25 C 0.010 3.990 26 O -0.075 6.075 27 H 0.086 0.914 28 H 0.086 0.914 29 H 0.125 0.875 30 H 0.190 0.810 31 H 0.153 0.847 32 H 0.241 0.759 33 H 0.222 0.778 34 H 0.046 0.954 35 H 0.046 0.954 36 H 0.076 0.924 37 H 0.174 0.826 38 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -25.204 -1.068 6.713 26.104 hybrid contribution 0.775 1.523 0.511 1.784 sum -24.428 0.456 7.224 25.478 Atomic orbital electron populations 1.23397 0.75152 1.04314 1.02939 1.86681 1.24104 1.31556 1.83769 1.19327 0.85524 0.82219 0.73250 1.90952 1.64342 1.35907 1.46199 1.20380 0.87794 0.86212 1.12765 1.22728 0.90418 0.98566 0.99189 1.19438 0.92907 0.92853 1.07922 1.20143 0.88624 0.99823 1.03825 1.17284 0.84545 0.91230 0.99241 1.42839 1.08665 1.25411 1.57346 1.16156 0.80582 0.83983 0.80229 1.90905 1.84036 1.25728 1.45291 1.45798 1.07908 1.29584 1.53778 1.19083 0.79671 0.94488 0.92321 1.21194 0.93413 1.11136 1.32638 0.91851 1.24939 0.99035 0.95337 0.94634 1.69971 1.25748 1.24674 1.31702 0.86391 0.82026 0.80416 0.77927 1.20435 1.20973 1.19769 1.21258 0.98408 0.92832 0.96484 1.19865 0.86738 1.00520 1.04121 1.19736 0.83295 0.92779 1.03221 1.84091 1.14193 1.32890 1.76354 0.91436 0.91423 0.87521 0.81010 0.84682 0.75927 0.77798 0.95382 0.95407 0.92360 0.82554 0.84185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.21 10.57 101.05 1.07 1.27 16 2 O -0.35 -3.38 10.58 -42.77 -0.45 -3.83 16 3 C 0.55 6.11 7.94 34.19 0.27 6.38 16 4 O -0.49 -5.90 16.62 -19.33 -0.32 -6.22 16 5 C -0.02 -0.27 7.10 -36.96 -0.26 -0.53 16 6 C -0.09 -0.95 10.81 -37.21 -0.40 -1.35 16 7 C -0.13 -1.56 6.38 -105.20 -0.67 -2.23 16 8 C -0.10 -1.18 10.02 -39.05 -0.39 -1.57 16 9 C 0.17 2.35 6.27 -83.64 -0.52 1.83 16 10 N -0.69 -9.56 5.35 -14.21 -0.08 -9.64 16 11 C 0.69 13.02 8.30 -86.92 -0.72 12.30 16 12 O -0.58 -13.20 14.03 5.28 0.07 -13.13 16 13 N -0.72 -14.16 5.55 -66.41 -0.37 -14.53 16 14 C 0.27 6.72 5.43 -5.20 -0.03 6.69 16 15 C -0.55 -14.25 9.28 -34.44 -0.32 -14.57 16 16 H 0.06 1.54 7.60 -52.49 -0.40 1.14 16 17 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 18 N -0.88 -25.36 13.29 55.43 0.74 -24.62 16 19 Si 0.91 20.30 29.54 -169.99 -5.02 15.28 16 20 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 21 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 22 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 23 C -0.07 -0.99 8.62 -39.34 -0.34 -1.33 16 24 C -0.09 -1.17 10.05 -39.49 -0.40 -1.56 16 25 C 0.06 0.75 7.40 -38.35 -0.28 0.47 16 26 O -0.17 -2.22 10.60 1.68 0.02 -2.20 16 27 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.11 0.34 8.14 -51.93 -0.42 -0.09 16 30 H 0.17 1.42 8.06 -52.48 -0.42 1.00 16 31 H 0.14 1.19 8.06 -52.49 -0.42 0.77 16 32 H 0.41 4.10 8.83 -40.82 -0.36 3.73 16 33 H 0.39 6.40 8.34 -40.82 -0.34 6.06 16 34 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 35 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 36 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 37 H 0.16 2.47 6.41 -52.49 -0.34 2.13 16 38 H 0.14 1.44 8.06 -52.49 -0.42 1.02 16 LS Contribution 344.85 15.07 5.20 5.20 Total: -1.00 -33.06 344.85 -7.26 -40.33 By element: Atomic # 1 Polarization: 9.89 SS G_CDS: -3.95 Total: 5.93 kcal Atomic # 6 Polarization: 10.53 SS G_CDS: -3.10 Total: 7.44 kcal Atomic # 7 Polarization: -49.08 SS G_CDS: 0.29 Total: -48.79 kcal Atomic # 8 Polarization: -24.70 SS G_CDS: -0.68 Total: -25.38 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.02 Total: 15.28 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -33.06 -7.26 -40.33 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000488369817.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.892 kcal (2) G-P(sol) polarization free energy of solvation -33.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds