Wall clock time and date at job start Tue Mar 31 2020 11:50:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34857 * 117.00018 * 2 1 4 4 O 1.21584 * 120.00316 * 359.97438 * 3 2 1 5 5 C 1.46805 * 119.99785 * 179.97438 * 3 2 1 6 6 C 1.35907 * 125.13807 * 179.97438 * 5 3 2 7 7 C 1.46230 * 106.07762 * 180.02562 * 6 5 3 8 8 C 1.39724 * 134.07891 * 180.02562 * 7 6 5 9 9 C 1.38175 * 119.53758 * 179.97438 * 8 7 6 10 10 N 1.40139 * 119.92009 * 179.97438 * 9 8 7 11 11 C 1.34775 * 119.99761 * 213.26255 * 10 9 8 12 12 O 1.21597 * 120.00043 * 5.31259 * 11 10 9 13 13 N 1.34775 * 120.00377 * 185.31200 * 11 10 9 14 14 C 1.46500 * 120.00811 * 179.97438 * 13 11 10 15 15 C 1.50696 * 109.47772 * 180.02562 * 14 13 11 16 16 H 1.08001 * 119.99626 * 0.02562 * 15 14 13 17 17 C 1.37877 * 120.00238 * 180.02562 * 15 14 13 18 18 N 1.31511 * 119.99856 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99984 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.46839 * 89.99951 * 19 17 15 21 21 H 1.48500 * 109.47011 * 210.00113 * 19 17 15 22 22 H 1.48498 * 109.46838 * 330.00146 * 19 17 15 23 23 C 1.39418 * 120.15517 * 359.71223 * 9 8 7 24 24 C 1.37684 * 120.68566 * 0.56644 * 23 9 8 25 25 C 1.39043 * 120.09202 * 359.45055 * 24 23 9 26 26 O 1.34823 * 133.05273 * 180.27841 * 25 24 23 27 27 H 1.09002 * 109.47389 * 300.00488 * 1 2 3 28 28 H 1.09002 * 109.46988 * 59.99923 * 1 2 3 29 29 H 1.08996 * 109.47308 * 179.97438 * 1 2 3 30 30 H 1.08005 * 126.95787 * 0.02562 * 6 5 3 31 31 H 1.08001 * 120.23085 * 0.02562 * 8 7 6 32 32 H 0.96993 * 120.00378 * 33.25933 * 10 9 8 33 33 H 0.97003 * 119.99697 * 0.02562 * 13 11 10 34 34 H 1.09002 * 109.46838 * 300.00637 * 14 13 11 35 35 H 1.09002 * 109.46674 * 59.99599 * 14 13 11 36 36 H 0.97003 * 119.99660 * 179.97438 * 18 17 15 37 37 H 1.07998 * 119.65810 * 180.29681 * 23 9 8 38 38 H 1.07995 * 119.95526 * 179.72948 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0642 1.2016 0.0000 4 8 1.4021 2.2213 -0.0005 5 6 3.5303 1.2784 0.0006 6 6 4.2533 2.4291 0.0001 7 6 5.6585 2.0245 0.0004 8 6 6.8703 2.7202 0.0006 9 6 8.0596 2.0167 0.0013 10 7 9.2796 2.7063 0.0010 11 6 10.3465 2.1877 -0.6387 12 8 10.2267 1.1716 -1.2958 13 7 11.5463 2.7953 -0.5500 14 6 12.7062 2.2313 -1.2448 15 6 13.9150 3.0930 -0.9856 16 1 13.8281 3.9726 -0.3649 17 6 15.1320 2.7586 -1.5407 18 7 15.2377 1.6878 -2.2968 19 14 16.6305 3.8263 -1.2187 20 1 17.3320 3.3411 -0.0031 21 1 17.5495 3.7536 -2.3829 22 1 16.2011 5.2331 -1.0141 23 6 8.0486 0.6226 0.0079 24 6 6.8592 -0.0708 0.0020 25 6 5.6510 0.6175 0.0009 26 8 4.3636 0.2170 0.0006 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 3.8680 3.4381 -0.0003 31 1 6.8773 3.8002 0.0010 32 1 9.3561 3.5567 0.4610 33 1 11.6419 3.6056 -0.0255 34 1 12.8943 1.2223 -0.8779 35 1 12.5068 2.1971 -2.3159 36 1 16.0938 1.4527 -2.6877 37 1 8.9829 0.0809 0.0132 38 1 6.8645 -1.1507 0.0028 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000488369817.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:50:14 Heat of formation + Delta-G solvation = -97.759878 kcal Electronic energy + Delta-G solvation = -24550.400426 eV Core-core repulsion = 20552.149419 eV Total energy + Delta-G solvation = -3998.251007 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.109 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.65145 -41.55611 -41.30721 -38.94144 -37.77472 -36.19778 -35.51674 -34.32373 -33.99306 -31.14890 -30.72673 -29.05699 -28.54720 -25.56399 -25.07017 -23.54223 -23.17541 -22.07193 -21.75869 -20.11748 -19.52035 -18.82933 -18.33031 -18.14831 -17.95414 -17.86480 -16.92537 -16.78198 -16.63483 -15.94177 -15.69306 -15.13448 -15.00071 -14.95660 -14.40163 -14.38249 -14.34668 -14.10079 -14.02519 -14.01479 -13.45976 -13.13730 -12.88959 -12.70706 -12.25575 -12.19753 -12.15458 -11.93801 -11.47079 -11.44428 -11.40914 -11.14550 -10.79144 -9.90814 -9.50090 -8.99835 -8.27112 -6.43047 -0.74400 0.13282 0.54920 1.03728 1.45259 1.47810 1.56846 1.61634 1.64459 1.83805 2.05443 2.40272 2.63928 3.08590 3.27187 3.39100 3.48762 3.76875 3.88108 4.02506 4.21452 4.24001 4.32723 4.35070 4.67959 4.70489 4.74354 4.87941 5.02402 5.05647 5.12515 5.18431 5.26133 5.28626 5.47422 5.56754 5.64396 5.84757 5.91209 6.16775 6.39318 6.68003 7.17152 7.27154 7.59216 8.84827 Molecular weight = 318.11amu Principal moments of inertia in cm(-1) A = 0.054002 B = 0.001918 C = 0.001872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 518.373761 B =14597.642831 C =14953.895157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.356 6.356 3 C 0.556 3.444 4 O -0.499 6.499 5 C -0.037 4.037 6 C -0.074 4.074 7 C -0.137 4.137 8 C -0.079 4.079 9 C 0.149 3.851 10 N -0.670 5.670 11 C 0.693 3.307 12 O -0.625 6.625 13 N -0.713 5.713 14 C 0.284 3.716 15 C -0.555 4.555 16 H 0.085 0.915 17 C 0.005 3.995 18 N -0.929 5.929 19 Si 0.984 3.016 20 H -0.272 1.272 21 H -0.286 1.286 22 H -0.256 1.256 23 C -0.086 4.086 24 C -0.093 4.093 25 C 0.048 3.952 26 O -0.184 6.184 27 H 0.073 0.927 28 H 0.071 0.929 29 H 0.134 0.866 30 H 0.200 0.800 31 H 0.170 0.830 32 H 0.426 0.574 33 H 0.408 0.592 34 H -0.009 1.009 35 H -0.010 1.010 36 H 0.268 0.732 37 H 0.133 0.867 38 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.351 2.257 8.635 27.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.272 6.272 3 C 0.401 3.599 4 O -0.389 6.389 5 C -0.085 4.085 6 C -0.093 4.093 7 C -0.138 4.138 8 C -0.100 4.100 9 C 0.054 3.946 10 N -0.320 5.320 11 C 0.393 3.607 12 O -0.505 6.505 13 N -0.367 5.367 14 C 0.161 3.839 15 C -0.593 4.593 16 H 0.103 0.897 17 C -0.195 4.195 18 N -0.568 5.568 19 Si 0.807 3.193 20 H -0.197 1.197 21 H -0.212 1.212 22 H -0.179 1.179 23 C -0.107 4.107 24 C -0.112 4.112 25 C 0.000 4.000 26 O -0.086 6.086 27 H 0.092 0.908 28 H 0.090 0.910 29 H 0.152 0.848 30 H 0.217 0.783 31 H 0.188 0.812 32 H 0.265 0.735 33 H 0.244 0.756 34 H 0.009 0.991 35 H 0.008 0.992 36 H 0.077 0.923 37 H 0.150 0.850 38 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -26.545 1.261 7.938 27.736 hybrid contribution 0.945 0.727 0.159 1.203 sum -25.600 1.989 8.098 26.924 Atomic orbital electron populations 1.23751 0.72979 1.06382 1.03451 1.86670 1.26288 1.30905 1.83297 1.19240 0.85289 0.82427 0.72908 1.90941 1.64535 1.36344 1.47101 1.20685 0.88231 0.86307 1.13237 1.23033 0.89343 0.99505 0.97453 1.19676 0.93810 0.92547 1.07777 1.20365 0.87246 1.01353 1.01037 1.17414 0.84868 0.91122 1.01234 1.42379 1.07396 1.25888 1.56339 1.16218 0.81175 0.83315 0.80004 1.90884 1.84805 1.27680 1.47162 1.45314 1.07072 1.30318 1.53959 1.18483 0.81810 0.93247 0.90400 1.21603 0.93524 1.11614 1.32563 0.89677 1.26016 1.02679 0.96613 0.94157 1.70132 1.26701 1.26843 1.33102 0.85170 0.77445 0.79029 0.77639 1.19717 1.21175 1.17945 1.21126 0.98041 0.93523 0.97983 1.19918 0.86331 1.01327 1.03607 1.19880 0.83408 0.93525 1.03233 1.84078 1.14206 1.33639 1.76683 0.90848 0.91010 0.84776 0.78305 0.81228 0.73461 0.75603 0.99061 0.99239 0.92285 0.84958 0.82770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 10.57 113.37 1.20 1.46 16 2 O -0.36 -6.51 10.58 -55.94 -0.59 -7.10 16 3 C 0.56 11.54 7.94 70.06 0.56 12.10 16 4 O -0.50 -11.30 16.62 19.56 0.33 -10.98 16 5 C -0.04 -0.80 7.10 23.97 0.17 -0.63 16 6 C -0.07 -1.39 10.81 23.81 0.26 -1.13 16 7 C -0.14 -2.99 6.38 -20.24 -0.13 -3.12 16 8 C -0.08 -1.60 10.02 22.61 0.23 -1.38 16 9 C 0.15 3.90 6.27 38.08 0.24 4.14 16 10 N -0.67 -17.70 5.35 -317.12 -1.70 -19.40 16 11 C 0.69 26.46 8.30 179.06 1.49 27.95 16 12 O -0.62 -29.63 14.03 -4.02 -0.06 -29.68 16 13 N -0.71 -28.29 5.55 -482.29 -2.68 -30.97 16 14 C 0.28 14.93 5.43 85.63 0.46 15.40 16 15 C -0.56 -29.04 9.28 25.60 0.24 -28.81 16 16 H 0.09 3.98 7.60 -2.91 -0.02 3.96 16 17 C 0.01 0.28 5.46 84.66 0.46 0.74 16 18 N -0.93 -54.76 13.29 21.45 0.28 -54.48 16 19 Si 0.98 41.19 29.54 68.60 2.03 43.21 16 20 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 21 H -0.29 -11.97 7.11 99.48 0.71 -11.27 16 22 H -0.26 -9.92 7.11 99.48 0.71 -9.22 16 23 C -0.09 -2.50 8.62 22.42 0.19 -2.31 16 24 C -0.09 -2.34 10.05 22.33 0.22 -2.11 16 25 C 0.05 1.19 7.40 23.07 0.17 1.37 16 26 O -0.18 -4.55 10.60 -13.26 -0.14 -4.69 16 27 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 28 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.13 0.54 8.14 -2.39 -0.02 0.52 16 30 H 0.20 2.56 8.06 -2.91 -0.02 2.53 16 31 H 0.17 2.24 8.06 -2.91 -0.02 2.21 16 32 H 0.43 7.56 8.83 -92.71 -0.82 6.74 16 33 H 0.41 12.91 8.34 -92.71 -0.77 12.14 16 34 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 35 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 36 H 0.27 14.81 8.31 -92.71 -0.77 14.04 16 37 H 0.13 4.48 6.41 -2.91 -0.02 4.46 16 38 H 0.15 3.24 8.06 -2.91 -0.02 3.22 16 Total: -1.00 -74.10 344.85 2.78 -71.32 By element: Atomic # 1 Polarization: 19.56 SS G_CDS: -0.45 Total: 19.11 kcal Atomic # 6 Polarization: 17.90 SS G_CDS: 5.76 Total: 23.66 kcal Atomic # 7 Polarization: -100.76 SS G_CDS: -4.09 Total: -104.85 kcal Atomic # 8 Polarization: -51.99 SS G_CDS: -0.46 Total: -52.45 kcal Atomic # 14 Polarization: 41.19 SS G_CDS: 2.03 Total: 43.21 kcal Total: -74.10 2.78 -71.32 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000488369817.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.444 kcal (2) G-P(sol) polarization free energy of solvation -74.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds