Wall clock time and date at job start Tue Mar 31 2020 12:08:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86803 * 119.99711 * 2 1 4 4 H 1.48492 * 109.47372 * 270.00448 * 3 2 1 5 5 H 1.48509 * 109.47104 * 30.00500 * 3 2 1 6 6 H 1.48499 * 109.47104 * 150.00193 * 3 2 1 7 7 C 1.38793 * 120.00577 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99796 * 359.97438 * 7 2 1 9 9 S 1.76197 * 120.00482 * 179.97438 * 7 2 1 10 10 C 1.80990 * 100.00218 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.47357 * 180.02562 * 10 9 7 12 12 C 1.53000 * 109.47399 * 179.97438 * 11 10 9 13 13 N 1.46896 * 109.47076 * 179.97438 * 12 11 10 14 14 C 1.46969 * 110.99776 * 169.67635 * 13 12 11 15 15 C 1.53472 * 109.73762 * 53.40619 * 14 13 12 16 16 N 1.46309 * 108.17735 * 49.60261 * 15 14 13 17 17 C 1.35934 * 123.86168 * 343.73098 * 16 15 14 18 18 N 1.29635 * 107.35997 * 179.72919 * 17 16 15 19 19 N 1.28984 * 109.47032 * 0.12479 * 18 17 16 20 20 C 1.30924 * 109.75703 * 359.96346 * 19 18 17 21 21 C 1.50698 * 126.48133 * 179.90310 * 20 19 18 22 22 F 1.39910 * 109.46865 * 120.02887 * 21 20 19 23 23 F 1.39899 * 109.47113 * 240.02612 * 21 20 19 24 24 C 1.47383 * 111.00399 * 293.95727 * 13 12 11 25 25 H 0.96997 * 120.00003 * 359.97438 * 1 2 3 26 26 H 1.08998 * 109.47302 * 59.99743 * 10 9 7 27 27 H 1.09000 * 109.47478 * 300.00011 * 10 9 7 28 28 H 1.09003 * 109.47012 * 60.00068 * 11 10 9 29 29 H 1.09000 * 109.46802 * 300.00383 * 11 10 9 30 30 H 1.09003 * 109.46753 * 60.00192 * 12 11 10 31 31 H 1.08993 * 109.47329 * 300.00676 * 12 11 10 32 32 H 1.09004 * 109.42650 * 173.48385 * 14 13 12 33 33 H 1.08991 * 109.43076 * 293.32311 * 14 13 12 34 34 H 1.09003 * 109.71865 * 169.27348 * 15 14 13 35 35 H 1.08992 * 109.71595 * 289.88778 * 15 14 13 36 36 H 1.08998 * 109.47526 * 0.03220 * 21 20 19 37 37 H 1.09002 * 109.75523 * 166.30198 * 24 13 12 38 38 H 1.08998 * 109.79568 * 45.58859 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4977 2.0466 -1.4000 5 1 1.4477 2.6527 0.7002 6 1 3.5478 1.4403 0.7000 7 6 2.0104 -1.2019 -0.0005 8 1 1.4705 -2.1373 -0.0005 9 16 3.7724 -1.2019 -0.0012 10 6 4.0868 -2.9843 -0.0025 11 6 5.5959 -3.2360 -0.0026 12 6 5.8617 -4.7428 -0.0031 13 7 7.3107 -4.9844 -0.0038 14 6 7.6082 -6.4026 0.2416 15 6 6.8355 -7.2747 -0.7573 16 7 7.0623 -6.7405 -2.1004 17 6 7.5563 -5.4986 -2.3481 18 7 7.6315 -5.3619 -3.6350 19 7 7.2130 -6.4395 -4.2071 20 6 6.8529 -7.3113 -3.2991 21 6 6.3065 -8.6931 -3.5506 22 9 7.1497 -9.6421 -2.9623 23 9 5.0273 -8.7971 -2.9939 24 6 7.9231 -4.5199 -1.2614 25 1 -0.4850 0.8400 0.0004 26 1 3.6435 -3.4308 -0.8926 27 1 3.6442 -3.4320 0.8873 28 1 6.0388 -2.7896 0.8877 29 1 6.0389 -2.7882 -0.8923 30 1 5.4188 -5.1895 -0.8933 31 1 5.4188 -5.1901 0.8866 32 1 8.6778 -6.5747 0.1214 33 1 7.3115 -6.6648 1.2570 34 1 7.1960 -8.3020 -0.7043 35 1 5.7712 -7.2458 -0.5241 36 1 6.2513 -8.8722 -4.6243 37 1 9.0068 -4.4810 -1.1511 38 1 7.5429 -3.5300 -1.5135 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000580579689.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:08:06 Heat of formation + Delta-G solvation = -14.915481 kcal Electronic energy + Delta-G solvation = -24428.409674 eV Core-core repulsion = 20490.400257 eV Total energy + Delta-G solvation = -3938.009417 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 318.102 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.70473 -47.70103 -43.87652 -39.24936 -35.31681 -33.39453 -32.46162 -32.01004 -30.62830 -27.80384 -26.58835 -25.75703 -25.30465 -23.34706 -22.32178 -21.74665 -19.72301 -18.34673 -18.09867 -17.84270 -17.52077 -16.98434 -16.78807 -15.98056 -15.79376 -15.35040 -14.99536 -14.71023 -14.56918 -14.23024 -14.05014 -14.03822 -13.69378 -13.42483 -12.88800 -12.80653 -12.44452 -12.24102 -12.11085 -12.06589 -11.89217 -11.59485 -11.13401 -11.06572 -10.94550 -10.68220 -10.60279 -10.24046 -9.82684 -9.71621 -9.10335 -9.02770 -8.61160 -6.97866 -6.30593 -4.03598 1.09449 1.74082 2.29517 2.68631 2.93239 3.25870 3.29727 3.43054 3.43745 3.57465 3.69794 3.82553 3.96204 4.20296 4.29461 4.29786 4.37450 4.67007 4.75855 4.78497 4.87943 4.99018 5.08191 5.08975 5.20195 5.21374 5.33647 5.39243 5.51513 5.62832 5.72606 6.05158 6.18074 6.26039 6.39271 6.42349 6.58363 7.92978 8.13736 8.41443 9.15092 10.78900 Molecular weight = 318.10amu Principal moments of inertia in cm(-1) A = 0.019762 B = 0.002942 C = 0.002828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1416.528933 B = 9513.551838 C = 9898.259872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.092 3.908 3 Si 0.862 3.138 4 H -0.268 1.268 5 H -0.275 1.275 6 H -0.237 1.237 7 C -0.504 4.504 8 H 0.087 0.913 9 S -0.209 6.209 10 C -0.083 4.083 11 C -0.098 4.098 12 C 0.050 3.950 13 N -0.523 5.523 14 C 0.042 3.958 15 C 0.057 3.943 16 N -0.451 5.451 17 C 0.169 3.831 18 N -0.273 5.273 19 N -0.254 5.254 20 C 0.095 3.905 21 C 0.368 3.632 22 F -0.189 7.189 23 F -0.186 7.186 24 C 0.131 3.869 25 H 0.271 0.729 26 H 0.063 0.937 27 H 0.068 0.932 28 H 0.081 0.919 29 H 0.068 0.932 30 H 0.036 0.964 31 H 0.085 0.915 32 H 0.092 0.908 33 H 0.113 0.887 34 H 0.106 0.894 35 H 0.101 0.899 36 H 0.154 0.846 37 H 0.115 0.885 38 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.802 -19.034 -1.226 26.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.116 4.116 3 Si 0.686 3.314 4 H -0.193 1.193 5 H -0.201 1.201 6 H -0.161 1.161 7 C -0.652 4.652 8 H 0.105 0.895 9 S 0.018 5.982 10 C -0.232 4.232 11 C -0.137 4.137 12 C -0.079 4.079 13 N -0.244 5.244 14 C -0.087 4.087 15 C -0.067 4.067 16 N -0.141 5.141 17 C -0.100 4.100 18 N -0.114 5.114 19 N -0.097 5.097 20 C -0.172 4.172 21 C 0.312 3.688 22 F -0.171 7.171 23 F -0.167 7.167 24 C 0.001 3.999 25 H 0.081 0.919 26 H 0.082 0.918 27 H 0.087 0.913 28 H 0.100 0.900 29 H 0.087 0.913 30 H 0.054 0.946 31 H 0.104 0.896 32 H 0.110 0.890 33 H 0.131 0.869 34 H 0.124 0.876 35 H 0.119 0.881 36 H 0.171 0.829 37 H 0.133 0.867 38 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 18.782 -17.216 -2.105 25.565 hybrid contribution -1.576 -1.485 0.574 2.240 sum 17.206 -18.701 -1.531 25.458 Atomic orbital electron populations 1.69936 1.05946 1.27763 1.48164 1.24796 0.94515 0.99042 0.93275 0.86670 0.81740 0.83171 0.79773 1.19319 1.20059 1.16109 1.22111 0.87073 0.97408 1.58575 0.89489 1.84153 1.11709 1.04775 1.97520 1.22988 0.96936 0.99739 1.03576 1.21368 0.95408 0.93258 1.03625 1.22378 0.85547 0.98626 1.01349 1.62422 1.13536 1.16700 1.31713 1.22703 1.00887 0.86045 0.99040 1.23020 1.04155 1.00823 0.78697 1.45908 1.46836 1.13425 1.07972 1.26038 1.00276 0.87346 0.96308 1.74109 1.18214 1.16019 1.03050 1.74541 1.12892 0.97025 1.25194 1.24876 1.09341 0.99762 0.83262 1.19466 0.72833 0.79098 0.97389 1.93054 1.71483 1.65530 1.86994 1.93085 1.39394 1.96138 1.88090 1.21309 1.01783 0.95904 0.80940 0.91934 0.91787 0.91295 0.90037 0.91297 0.94618 0.89639 0.88950 0.86922 0.87617 0.88075 0.82897 0.86689 0.85726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.76 13.97 55.49 0.78 -25.98 16 2 C 0.09 2.69 5.50 -17.43 -0.10 2.59 16 3 Si 0.86 21.48 27.74 -169.99 -4.71 16.76 16 4 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 6 H -0.24 -5.75 6.74 56.52 0.38 -5.37 16 7 C -0.50 -14.59 10.04 30.94 0.31 -14.28 16 8 H 0.09 2.68 8.03 -52.49 -0.42 2.26 16 9 S -0.21 -5.02 19.41 -107.50 -2.09 -7.11 16 10 C -0.08 -1.55 5.67 37.16 0.21 -1.34 16 11 C -0.10 -1.37 5.18 -26.73 -0.14 -1.51 16 12 C 0.05 0.54 4.02 -3.83 -0.02 0.52 16 13 N -0.52 -4.56 4.96 -235.25 -1.17 -5.72 16 14 C 0.04 0.26 5.94 -3.54 -0.02 0.23 16 15 C 0.06 0.41 6.17 -3.90 -0.02 0.38 16 16 N -0.45 -4.70 2.86 -110.79 -0.32 -5.02 16 17 C 0.17 2.00 7.09 -155.28 -1.10 0.90 16 18 N -0.27 -4.00 12.20 32.76 0.40 -3.60 16 19 N -0.25 -3.57 12.24 32.66 0.40 -3.17 16 20 C 0.10 1.08 7.52 -155.63 -1.17 -0.09 16 21 C 0.37 2.98 5.65 36.00 0.20 3.18 16 22 F -0.19 -1.54 17.14 2.25 0.04 -1.50 16 23 F -0.19 -1.75 17.32 2.25 0.04 -1.71 16 24 C 0.13 1.22 6.08 -4.67 -0.03 1.19 16 25 H 0.27 7.62 8.31 -40.82 -0.34 7.28 16 26 H 0.06 1.24 8.14 -51.92 -0.42 0.82 16 27 H 0.07 1.27 8.14 -51.92 -0.42 0.85 16 28 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 29 H 0.07 0.98 6.31 -51.93 -0.33 0.65 16 30 H 0.04 0.44 6.27 -51.93 -0.33 0.11 16 31 H 0.09 0.84 8.07 -51.93 -0.42 0.42 16 32 H 0.09 0.48 8.08 -51.93 -0.42 0.06 16 33 H 0.11 0.49 8.14 -51.93 -0.42 0.06 16 34 H 0.11 0.58 7.96 -51.93 -0.41 0.17 16 35 H 0.10 0.74 7.23 -51.93 -0.38 0.36 16 36 H 0.15 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.12 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.12 1.26 6.01 -51.93 -0.31 0.94 16 LS Contribution 332.76 15.07 5.01 5.01 Total: -1.00 -34.43 332.76 -8.19 -42.63 By element: Atomic # 1 Polarization: 2.33 SS G_CDS: -4.71 Total: -2.38 kcal Atomic # 6 Polarization: -6.35 SS G_CDS: -1.87 Total: -8.22 kcal Atomic # 7 Polarization: -43.58 SS G_CDS: 0.09 Total: -43.49 kcal Atomic # 9 Polarization: -3.29 SS G_CDS: 0.08 Total: -3.21 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -4.71 Total: 16.76 kcal Atomic # 16 Polarization: -5.02 SS G_CDS: -2.09 Total: -7.11 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -34.43 -8.19 -42.63 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000580579689.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.710 kcal (2) G-P(sol) polarization free energy of solvation -34.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds