Wall clock time and date at job start Tue Mar 31 2020 12:08:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86803 * 119.99711 * 2 1 4 4 H 1.48492 * 109.47372 * 270.00448 * 3 2 1 5 5 H 1.48509 * 109.47104 * 30.00500 * 3 2 1 6 6 H 1.48499 * 109.47104 * 150.00193 * 3 2 1 7 7 C 1.38793 * 120.00577 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99796 * 359.97438 * 7 2 1 9 9 S 1.76197 * 120.00482 * 179.97438 * 7 2 1 10 10 C 1.80990 * 100.00218 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.47357 * 180.02562 * 10 9 7 12 12 C 1.53000 * 109.47399 * 179.97438 * 11 10 9 13 13 N 1.46896 * 109.47076 * 179.97438 * 12 11 10 14 14 C 1.46969 * 110.99776 * 169.67635 * 13 12 11 15 15 C 1.53472 * 109.73762 * 53.40619 * 14 13 12 16 16 N 1.46309 * 108.17735 * 49.60261 * 15 14 13 17 17 C 1.35934 * 123.86168 * 343.73098 * 16 15 14 18 18 N 1.29635 * 107.35997 * 179.72919 * 17 16 15 19 19 N 1.28984 * 109.47032 * 0.12479 * 18 17 16 20 20 C 1.30924 * 109.75703 * 359.96346 * 19 18 17 21 21 C 1.50698 * 126.48133 * 179.90310 * 20 19 18 22 22 F 1.39910 * 109.46865 * 120.02887 * 21 20 19 23 23 F 1.39899 * 109.47113 * 240.02612 * 21 20 19 24 24 C 1.47383 * 111.00399 * 293.95727 * 13 12 11 25 25 H 0.96997 * 120.00003 * 359.97438 * 1 2 3 26 26 H 1.08998 * 109.47302 * 59.99743 * 10 9 7 27 27 H 1.09000 * 109.47478 * 300.00011 * 10 9 7 28 28 H 1.09003 * 109.47012 * 60.00068 * 11 10 9 29 29 H 1.09000 * 109.46802 * 300.00383 * 11 10 9 30 30 H 1.09003 * 109.46753 * 60.00192 * 12 11 10 31 31 H 1.08993 * 109.47329 * 300.00676 * 12 11 10 32 32 H 1.09004 * 109.42650 * 173.48385 * 14 13 12 33 33 H 1.08991 * 109.43076 * 293.32311 * 14 13 12 34 34 H 1.09003 * 109.71865 * 169.27348 * 15 14 13 35 35 H 1.08992 * 109.71595 * 289.88778 * 15 14 13 36 36 H 1.08998 * 109.47526 * 0.03220 * 21 20 19 37 37 H 1.09002 * 109.75523 * 166.30198 * 24 13 12 38 38 H 1.08998 * 109.79568 * 45.58859 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4977 2.0466 -1.4000 5 1 1.4477 2.6527 0.7002 6 1 3.5478 1.4403 0.7000 7 6 2.0104 -1.2019 -0.0005 8 1 1.4705 -2.1373 -0.0005 9 16 3.7724 -1.2019 -0.0012 10 6 4.0868 -2.9843 -0.0025 11 6 5.5959 -3.2360 -0.0026 12 6 5.8617 -4.7428 -0.0031 13 7 7.3107 -4.9844 -0.0038 14 6 7.6082 -6.4026 0.2416 15 6 6.8355 -7.2747 -0.7573 16 7 7.0623 -6.7405 -2.1004 17 6 7.5563 -5.4986 -2.3481 18 7 7.6315 -5.3619 -3.6350 19 7 7.2130 -6.4395 -4.2071 20 6 6.8529 -7.3113 -3.2991 21 6 6.3065 -8.6931 -3.5506 22 9 7.1497 -9.6421 -2.9623 23 9 5.0273 -8.7971 -2.9939 24 6 7.9231 -4.5199 -1.2614 25 1 -0.4850 0.8400 0.0004 26 1 3.6435 -3.4308 -0.8926 27 1 3.6442 -3.4320 0.8873 28 1 6.0388 -2.7896 0.8877 29 1 6.0389 -2.7882 -0.8923 30 1 5.4188 -5.1895 -0.8933 31 1 5.4188 -5.1901 0.8866 32 1 8.6778 -6.5747 0.1214 33 1 7.3115 -6.6648 1.2570 34 1 7.1960 -8.3020 -0.7043 35 1 5.7712 -7.2458 -0.5241 36 1 6.2513 -8.8722 -4.6243 37 1 9.0068 -4.4810 -1.1511 38 1 7.5429 -3.5300 -1.5135 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000580579689.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:08:06 Heat of formation + Delta-G solvation = -38.034737 kcal Electronic energy + Delta-G solvation = -24429.412200 eV Core-core repulsion = 20490.400257 eV Total energy + Delta-G solvation = -3939.011943 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 318.102 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -50.37259 -48.36965 -44.71866 -39.99865 -36.18925 -34.70929 -34.44575 -32.85623 -31.33595 -28.69535 -27.97499 -27.40727 -26.14923 -24.19895 -23.17605 -22.77752 -20.51501 -19.66761 -19.04126 -18.79496 -18.48073 -17.76051 -17.53642 -17.13635 -16.85209 -16.67939 -16.27924 -15.75566 -15.56417 -15.24023 -14.96341 -14.88275 -14.71860 -14.39650 -14.20613 -13.91579 -13.54207 -13.42202 -13.15391 -13.06993 -12.97541 -12.82263 -12.71341 -12.41057 -12.07300 -11.86956 -11.78026 -11.63653 -11.41743 -11.18125 -10.62518 -10.58213 -9.84057 -9.00864 -8.53842 -6.25297 0.28166 1.01922 1.11239 1.31842 1.38215 1.46835 1.71514 1.97534 2.23502 2.56222 2.67362 2.80722 2.84485 2.98554 3.21313 3.35454 3.61983 3.68767 3.74719 3.88181 4.06969 4.07792 4.10560 4.22768 4.33588 4.41175 4.50138 4.53629 4.64823 4.68752 4.76137 4.80353 5.06070 5.20657 5.44180 5.61547 5.67244 5.73859 6.07509 6.90181 7.24402 8.59382 Molecular weight = 318.10amu Principal moments of inertia in cm(-1) A = 0.019762 B = 0.002942 C = 0.002828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1416.528933 B = 9513.551838 C = 9898.259872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.037 3.963 3 Si 0.926 3.074 4 H -0.264 1.264 5 H -0.262 1.262 6 H -0.225 1.225 7 C -0.525 4.525 8 H 0.048 0.952 9 S -0.214 6.214 10 C -0.070 4.070 11 C -0.087 4.087 12 C 0.062 3.938 13 N -0.517 5.517 14 C 0.045 3.955 15 C 0.052 3.948 16 N -0.452 5.452 17 C 0.169 3.831 18 N -0.317 5.317 19 N -0.290 5.290 20 C 0.095 3.905 21 C 0.373 3.627 22 F -0.187 7.187 23 F -0.193 7.193 24 C 0.132 3.868 25 H 0.277 0.723 26 H 0.051 0.949 27 H 0.071 0.929 28 H 0.089 0.911 29 H 0.066 0.934 30 H 0.020 0.980 31 H 0.102 0.898 32 H 0.108 0.892 33 H 0.139 0.861 34 H 0.125 0.875 35 H 0.100 0.900 36 H 0.184 0.816 37 H 0.140 0.860 38 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.974 -19.744 -0.036 28.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.167 4.167 3 Si 0.747 3.253 4 H -0.188 1.188 5 H -0.186 1.186 6 H -0.148 1.148 7 C -0.673 4.673 8 H 0.066 0.934 9 S 0.014 5.986 10 C -0.219 4.219 11 C -0.126 4.126 12 C -0.067 4.067 13 N -0.238 5.238 14 C -0.083 4.083 15 C -0.071 4.071 16 N -0.142 5.142 17 C -0.101 4.101 18 N -0.157 5.157 19 N -0.132 5.132 20 C -0.174 4.174 21 C 0.317 3.683 22 F -0.168 7.168 23 F -0.174 7.174 24 C 0.001 3.999 25 H 0.086 0.914 26 H 0.070 0.930 27 H 0.090 0.910 28 H 0.107 0.893 29 H 0.084 0.916 30 H 0.038 0.962 31 H 0.121 0.879 32 H 0.127 0.873 33 H 0.157 0.843 34 H 0.143 0.857 35 H 0.118 0.882 36 H 0.201 0.799 37 H 0.158 0.842 38 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 20.959 -17.947 -0.901 27.608 hybrid contribution -2.266 -1.427 0.222 2.687 sum 18.693 -19.374 -0.680 26.930 Atomic orbital electron populations 1.70040 1.07727 1.29161 1.49186 1.25804 0.95426 1.02852 0.92659 0.85709 0.80923 0.78517 0.80178 1.18846 1.18647 1.14817 1.22351 0.90294 0.96160 1.58455 0.93390 1.83814 1.07268 1.09928 1.97541 1.23050 1.00431 0.95343 1.03100 1.21263 0.91524 0.95932 1.03872 1.22152 0.87251 0.95885 1.01451 1.62412 1.11660 1.18762 1.30944 1.22892 1.01755 0.83817 0.99865 1.23316 1.04453 1.02093 0.77238 1.46165 1.46123 1.13007 1.08893 1.26429 0.99568 0.88139 0.96010 1.74003 1.20010 1.16985 1.04716 1.74424 1.14498 0.97696 1.26579 1.25434 1.08194 1.00497 0.83296 1.19751 0.72155 0.77617 0.98735 1.93056 1.71434 1.65155 1.87149 1.93071 1.39932 1.96050 1.88374 1.21467 1.03169 0.94775 0.80445 0.91379 0.93033 0.90999 0.89271 0.91562 0.96184 0.87948 0.87349 0.84327 0.85653 0.88206 0.79920 0.84248 0.86763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.23 13.97 21.65 0.30 -56.92 16 2 C 0.04 2.20 5.50 84.86 0.47 2.67 16 3 Si 0.93 44.16 27.74 68.60 1.90 46.07 16 4 H -0.26 -12.32 7.11 99.48 0.71 -11.61 16 5 H -0.26 -11.81 7.11 99.48 0.71 -11.10 16 6 H -0.22 -10.21 6.74 99.48 0.67 -9.54 16 7 C -0.53 -31.11 10.04 67.95 0.68 -30.43 16 8 H 0.05 3.10 8.03 -2.91 -0.02 3.08 16 9 S -0.21 -10.15 19.41 -56.49 -1.10 -11.25 16 10 C -0.07 -2.58 5.67 71.98 0.41 -2.17 16 11 C -0.09 -2.28 5.18 30.60 0.16 -2.12 16 12 C 0.06 1.20 4.02 86.30 0.35 1.54 16 13 N -0.52 -7.44 4.96 -898.19 -4.45 -11.89 16 14 C 0.04 0.37 5.94 86.45 0.51 0.89 16 15 C 0.05 0.59 6.17 86.57 0.53 1.12 16 16 N -0.45 -8.72 2.86 -504.43 -1.44 -10.16 16 17 C 0.17 3.81 7.09 138.12 0.98 4.79 16 18 N -0.32 -9.32 12.20 -50.27 -0.61 -9.94 16 19 N -0.29 -8.17 12.24 -50.58 -0.62 -8.79 16 20 C 0.10 2.06 7.52 138.20 1.04 3.10 16 21 C 0.37 5.46 5.65 71.24 0.40 5.86 16 22 F -0.19 -2.65 17.14 44.97 0.77 -1.87 16 23 F -0.19 -3.37 17.32 44.97 0.78 -2.59 16 24 C 0.13 2.20 6.08 85.49 0.52 2.72 16 25 H 0.28 15.79 8.31 -92.71 -0.77 15.02 16 26 H 0.05 2.01 8.14 -2.40 -0.02 1.99 16 27 H 0.07 2.60 8.14 -2.40 -0.02 2.58 16 28 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 29 H 0.07 1.80 6.31 -2.39 -0.02 1.78 16 30 H 0.02 0.46 6.27 -2.39 -0.01 0.44 16 31 H 0.10 1.67 8.07 -2.39 -0.02 1.65 16 32 H 0.11 0.65 8.08 -2.38 -0.02 0.63 16 33 H 0.14 0.53 8.14 -2.39 -0.02 0.51 16 34 H 0.13 0.96 7.96 -2.39 -0.02 0.94 16 35 H 0.10 1.21 7.23 -2.39 -0.02 1.19 16 36 H 0.18 1.55 8.14 -2.39 -0.02 1.54 16 37 H 0.14 1.64 8.14 -2.39 -0.02 1.62 16 38 H 0.11 2.16 6.01 -2.39 -0.01 2.15 16 Total: -1.00 -76.90 332.76 2.63 -74.27 By element: Atomic # 1 Polarization: 4.07 SS G_CDS: 1.05 Total: 5.13 kcal Atomic # 6 Polarization: -18.09 SS G_CDS: 6.05 Total: -12.04 kcal Atomic # 7 Polarization: -90.88 SS G_CDS: -6.83 Total: -97.71 kcal Atomic # 9 Polarization: -6.02 SS G_CDS: 1.55 Total: -4.47 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 1.90 Total: 46.07 kcal Atomic # 16 Polarization: -10.15 SS G_CDS: -1.10 Total: -11.25 kcal Total: -76.90 2.63 -74.27 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000580579689.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.233 kcal (2) G-P(sol) polarization free energy of solvation -76.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds