Wall clock time and date at job start Tue Mar 31 2020 11:47:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35823 * 116.99600 * 2 1 4 4 C 1.39086 * 120.86779 * 359.71538 * 3 2 1 5 5 C 1.38068 * 119.16502 * 180.27414 * 4 3 2 6 6 C 1.50698 * 119.52337 * 179.97438 * 5 4 3 7 7 F 1.39896 * 109.47340 * 185.02084 * 6 5 4 8 8 F 1.39899 * 109.46946 * 305.02238 * 6 5 4 9 9 F 1.39900 * 109.46847 * 65.01825 * 6 5 4 10 10 N 1.31946 * 120.95406 * 0.02562 * 5 4 3 11 11 C 1.31937 * 121.91879 * 0.02562 * 10 5 4 12 12 C 1.38578 * 120.71882 * 359.97438 * 11 10 5 13 13 N 1.40165 * 120.50789 * 180.02562 * 12 11 10 14 14 C 1.34770 * 120.00284 * 24.72478 * 13 12 11 15 15 O 1.21299 * 119.99791 * 5.54882 * 14 13 12 16 16 C 1.50698 * 120.00384 * 185.55158 * 14 13 12 17 17 C 1.52996 * 109.47524 * 179.97438 * 16 14 13 18 18 C 1.50698 * 109.47524 * 180.02562 * 17 16 14 19 19 H 1.08005 * 119.99605 * 359.97438 * 18 17 16 20 20 C 1.37871 * 120.00470 * 180.02562 * 18 17 16 21 21 N 1.31522 * 119.99684 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 120.00392 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.47063 * 90.00004 * 22 20 18 24 24 H 1.48498 * 109.47432 * 209.99750 * 22 20 18 25 25 H 1.48497 * 109.46951 * 329.99972 * 22 20 18 26 26 H 1.08998 * 109.47210 * 60.00222 * 1 2 3 27 27 H 1.09003 * 109.47016 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47526 * 300.00158 * 1 2 3 29 29 H 1.08003 * 120.41629 * 0.25583 * 4 3 2 30 30 H 1.07991 * 119.63594 * 179.97438 * 11 10 5 31 31 H 0.97000 * 119.99414 * 204.72249 * 13 12 11 32 32 H 1.09002 * 109.47057 * 300.00029 * 16 14 13 33 33 H 1.08998 * 109.47108 * 59.99995 * 16 14 13 34 34 H 1.09002 * 109.47013 * 300.00099 * 17 16 14 35 35 H 1.09001 * 109.47386 * 60.00029 * 17 16 14 36 36 H 0.96998 * 119.99576 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0456 1.2102 0.0000 4 6 1.3057 2.3880 -0.0059 5 6 1.9687 3.5990 -0.0115 6 6 1.1751 4.8801 -0.0185 7 9 2.0466 5.9679 -0.1387 8 9 0.2869 4.8724 -1.0993 9 9 0.4551 4.9891 1.1760 10 7 3.2872 3.6509 -0.0118 11 6 4.0283 2.5594 -0.0073 12 6 3.4403 1.3046 -0.0015 13 7 4.2318 0.1478 0.0038 14 6 5.4873 0.1926 0.4917 15 8 5.8977 1.2056 1.0177 16 6 6.3812 -1.0158 0.3839 17 6 7.7416 -0.7014 1.0095 18 6 8.6358 -1.9096 0.9011 19 1 8.2701 -2.8117 0.4331 20 6 9.9201 -1.8637 1.4001 21 7 10.3649 -0.7657 1.9713 22 14 11.0283 -3.3616 1.2664 23 1 11.7873 -3.3035 -0.0086 24 1 11.9782 -3.3781 2.4076 25 1 10.2002 -4.5939 1.2938 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 0.2262 2.3556 -0.0065 30 1 5.1048 2.6448 -0.0081 31 1 3.8759 -0.6849 -0.3438 32 1 5.9241 -1.8540 0.9097 33 1 6.5160 -1.2755 -0.6661 34 1 8.1985 0.1367 0.4832 35 1 7.6073 -0.4414 2.0595 36 1 11.2686 -0.7333 2.3221 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000589793715.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:47:37 Heat of formation + Delta-G solvation = -188.090505 kcal Electronic energy + Delta-G solvation = -26030.818377 eV Core-core repulsion = 21486.793600 eV Total energy + Delta-G solvation = -4544.024777 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.098 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -50.33521 -47.89033 -47.75555 -41.44423 -39.53220 -38.60308 -35.21243 -33.62455 -31.98620 -31.59639 -30.58372 -28.15123 -26.81298 -25.48919 -23.88482 -22.82512 -21.71140 -20.13013 -19.43174 -18.73827 -18.70281 -18.05377 -17.36586 -16.97596 -16.61899 -16.33160 -15.65744 -15.28972 -14.90858 -14.80141 -14.68564 -14.49015 -14.35416 -14.25556 -14.02663 -13.93685 -13.92286 -13.81183 -13.52321 -12.67817 -12.54794 -12.26781 -12.09736 -11.94259 -11.29258 -11.04381 -10.95671 -10.66655 -10.10376 -10.08264 -9.84669 -9.60921 -9.39547 -9.18187 -8.41228 -8.34044 -6.03135 -4.08286 0.39912 0.84066 2.25247 2.55025 2.72288 2.93066 3.29382 3.29822 3.35963 3.37260 3.38471 3.71580 4.18825 4.24759 4.37747 4.41238 4.55247 4.64631 4.68471 4.94504 5.01346 5.11554 5.23893 5.32275 5.39452 5.89201 6.01498 6.05145 6.32982 6.68450 6.70984 7.35038 7.46783 7.64775 7.72698 7.96675 8.20076 8.35846 8.99135 9.56016 11.07656 Molecular weight = 318.10amu Principal moments of inertia in cm(-1) A = 0.023138 B = 0.002647 C = 0.002428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.851399 B =10575.269091 C =11531.701863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.305 6.305 3 C 0.128 3.872 4 C -0.189 4.189 5 C 0.037 3.963 6 C 0.526 3.474 7 F -0.160 7.160 8 F -0.175 7.175 9 F -0.174 7.174 10 N -0.438 5.438 11 C 0.121 3.879 12 C 0.122 3.878 13 N -0.668 5.668 14 C 0.511 3.489 15 O -0.506 6.506 16 C -0.127 4.127 17 C 0.036 3.964 18 C -0.530 4.530 19 H 0.057 0.943 20 C 0.059 3.941 21 N -0.888 5.888 22 Si 0.894 3.106 23 H -0.280 1.280 24 H -0.286 1.286 25 H -0.274 1.274 26 H 0.060 0.940 27 H 0.108 0.892 28 H 0.061 0.939 29 H 0.151 0.849 30 H 0.199 0.801 31 H 0.418 0.582 32 H 0.087 0.913 33 H 0.088 0.912 34 H 0.026 0.974 35 H 0.026 0.974 36 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.356 4.497 -6.370 25.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.216 6.216 3 C 0.073 3.927 4 C -0.212 4.212 5 C -0.104 4.104 6 C 0.471 3.529 7 F -0.141 7.141 8 F -0.156 7.156 9 F -0.155 7.155 10 N -0.149 5.149 11 C -0.039 4.039 12 C 0.022 3.978 13 N -0.314 5.314 14 C 0.302 3.698 15 O -0.379 6.379 16 C -0.167 4.167 17 C -0.002 4.002 18 C -0.568 4.568 19 H 0.075 0.925 20 C -0.143 4.143 21 N -0.526 5.526 22 Si 0.722 3.278 23 H -0.206 1.206 24 H -0.212 1.212 25 H -0.199 1.199 26 H 0.079 0.921 27 H 0.126 0.874 28 H 0.079 0.921 29 H 0.168 0.832 30 H 0.215 0.785 31 H 0.255 0.745 32 H 0.105 0.895 33 H 0.107 0.893 34 H 0.045 0.955 35 H 0.044 0.956 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -23.343 5.847 -5.891 24.774 hybrid contribution -0.470 -1.715 -0.168 1.786 sum -23.813 4.132 -6.059 24.917 Atomic orbital electron populations 1.23210 0.77152 1.04837 1.01882 1.86060 1.22344 1.24897 1.88311 1.18815 0.90483 0.85235 0.98196 1.21549 1.01655 0.91103 1.06854 1.20578 0.91959 0.91632 1.06204 1.17800 0.77459 0.83907 0.73779 1.93242 1.68909 1.56443 1.95505 1.93212 1.69863 1.96754 1.55776 1.93226 1.79030 1.96472 1.46763 1.67372 1.04269 1.32434 1.10869 1.23327 1.01881 0.83893 0.94754 1.18641 0.87341 0.90160 1.01687 1.43962 1.14497 1.10663 1.62235 1.22081 0.80315 0.91996 0.75446 1.90659 1.73142 1.33448 1.40673 1.21950 0.97937 0.93137 1.03651 1.18948 0.87265 0.97271 0.96714 1.21163 0.97841 0.98732 1.39105 0.92506 1.25019 0.98114 0.96040 0.95134 1.69990 1.17335 1.26713 1.38579 0.86573 0.80562 0.83034 0.77677 1.20623 1.21189 1.19878 0.92098 0.87368 0.92080 0.83166 0.78460 0.74521 0.89511 0.89328 0.95530 0.95586 0.92830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.12 9.84 101.05 0.99 1.12 16 2 O -0.30 -2.80 10.03 -19.18 -0.19 -2.99 16 3 C 0.13 1.43 6.75 -38.69 -0.26 1.17 16 4 C -0.19 -1.95 8.60 -39.33 -0.34 -2.29 16 5 C 0.04 0.46 6.26 -82.61 -0.52 -0.05 16 6 C 0.53 6.08 3.31 36.00 0.12 6.20 16 7 F -0.16 -2.08 16.85 2.25 0.04 -2.05 16 8 F -0.17 -1.82 17.15 2.25 0.04 -1.78 16 9 F -0.17 -1.93 17.28 2.25 0.04 -1.89 16 10 N -0.44 -6.51 9.73 -9.39 -0.09 -6.61 16 11 C 0.12 1.83 9.90 -17.38 -0.17 1.65 16 12 C 0.12 1.64 6.47 -83.34 -0.54 1.10 16 13 N -0.67 -8.78 5.31 -9.65 -0.05 -8.83 16 14 C 0.51 8.73 7.64 -10.99 -0.08 8.65 16 15 O -0.51 -10.51 13.18 5.54 0.07 -10.43 16 16 C -0.13 -2.30 5.64 -27.89 -0.16 -2.46 16 17 C 0.04 0.89 4.26 -27.89 -0.12 0.77 16 18 C -0.53 -14.35 9.11 -34.44 -0.31 -14.66 16 19 H 0.06 1.44 7.74 -52.48 -0.41 1.04 16 20 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 21 N -0.89 -26.57 13.29 55.43 0.74 -25.83 16 22 Si 0.89 21.06 29.54 -169.99 -5.02 16.04 16 23 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 24 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 25 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 26 H 0.06 0.24 7.70 -51.93 -0.40 -0.16 16 27 H 0.11 0.35 8.14 -51.93 -0.42 -0.08 16 28 H 0.06 0.27 7.72 -51.93 -0.40 -0.13 16 29 H 0.15 1.07 6.46 -52.48 -0.34 0.73 16 30 H 0.20 3.27 5.80 -52.49 -0.30 2.97 16 31 H 0.42 4.26 8.43 -40.82 -0.34 3.92 16 32 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 33 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 34 H 0.03 0.73 8.10 -51.93 -0.42 0.30 16 35 H 0.03 0.72 8.10 -51.93 -0.42 0.30 16 36 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 329.71 15.07 4.97 4.97 Total: -1.00 -32.59 329.71 -4.39 -36.98 By element: Atomic # 1 Polarization: 3.10 SS G_CDS: -3.44 Total: -0.34 kcal Atomic # 6 Polarization: 4.25 SS G_CDS: -1.49 Total: 2.76 kcal Atomic # 7 Polarization: -41.86 SS G_CDS: 0.59 Total: -41.27 kcal Atomic # 8 Polarization: -13.30 SS G_CDS: -0.12 Total: -13.42 kcal Atomic # 9 Polarization: -5.83 SS G_CDS: 0.12 Total: -5.71 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -32.59 -4.39 -36.98 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589793715.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -151.115 kcal (2) G-P(sol) polarization free energy of solvation -32.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -183.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -188.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds