Wall clock time and date at job start Tue Mar 31 2020 11:47:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35823 * 116.99600 * 2 1 4 4 C 1.39086 * 120.86779 * 359.71538 * 3 2 1 5 5 C 1.38068 * 119.16502 * 180.27414 * 4 3 2 6 6 C 1.50698 * 119.52337 * 179.97438 * 5 4 3 7 7 F 1.39896 * 109.47340 * 185.02084 * 6 5 4 8 8 F 1.39899 * 109.46946 * 305.02238 * 6 5 4 9 9 F 1.39900 * 109.46847 * 65.01825 * 6 5 4 10 10 N 1.31946 * 120.95406 * 0.02562 * 5 4 3 11 11 C 1.31937 * 121.91879 * 0.02562 * 10 5 4 12 12 C 1.38578 * 120.71882 * 359.97438 * 11 10 5 13 13 N 1.40165 * 120.50789 * 180.02562 * 12 11 10 14 14 C 1.34770 * 120.00284 * 24.72478 * 13 12 11 15 15 O 1.21299 * 119.99791 * 5.54882 * 14 13 12 16 16 C 1.50698 * 120.00384 * 185.55158 * 14 13 12 17 17 C 1.52996 * 109.47524 * 179.97438 * 16 14 13 18 18 C 1.50698 * 109.47524 * 180.02562 * 17 16 14 19 19 H 1.08005 * 119.99605 * 359.97438 * 18 17 16 20 20 C 1.37871 * 120.00470 * 180.02562 * 18 17 16 21 21 N 1.31522 * 119.99684 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 120.00392 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.47063 * 90.00004 * 22 20 18 24 24 H 1.48498 * 109.47432 * 209.99750 * 22 20 18 25 25 H 1.48497 * 109.46951 * 329.99972 * 22 20 18 26 26 H 1.08998 * 109.47210 * 60.00222 * 1 2 3 27 27 H 1.09003 * 109.47016 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47526 * 300.00158 * 1 2 3 29 29 H 1.08003 * 120.41629 * 0.25583 * 4 3 2 30 30 H 1.07991 * 119.63594 * 179.97438 * 11 10 5 31 31 H 0.97000 * 119.99414 * 204.72249 * 13 12 11 32 32 H 1.09002 * 109.47057 * 300.00029 * 16 14 13 33 33 H 1.08998 * 109.47108 * 59.99995 * 16 14 13 34 34 H 1.09002 * 109.47013 * 300.00099 * 17 16 14 35 35 H 1.09001 * 109.47386 * 60.00029 * 17 16 14 36 36 H 0.96998 * 119.99576 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0456 1.2102 0.0000 4 6 1.3057 2.3880 -0.0059 5 6 1.9687 3.5990 -0.0115 6 6 1.1751 4.8801 -0.0185 7 9 2.0466 5.9679 -0.1387 8 9 0.2869 4.8724 -1.0993 9 9 0.4551 4.9891 1.1760 10 7 3.2872 3.6509 -0.0118 11 6 4.0283 2.5594 -0.0073 12 6 3.4403 1.3046 -0.0015 13 7 4.2318 0.1478 0.0038 14 6 5.4873 0.1926 0.4917 15 8 5.8977 1.2056 1.0177 16 6 6.3812 -1.0158 0.3839 17 6 7.7416 -0.7014 1.0095 18 6 8.6358 -1.9096 0.9011 19 1 8.2701 -2.8117 0.4331 20 6 9.9201 -1.8637 1.4001 21 7 10.3649 -0.7657 1.9713 22 14 11.0283 -3.3616 1.2664 23 1 11.7873 -3.3035 -0.0086 24 1 11.9782 -3.3781 2.4076 25 1 10.2002 -4.5939 1.2938 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 0.2262 2.3556 -0.0065 30 1 5.1048 2.6448 -0.0081 31 1 3.8759 -0.6849 -0.3438 32 1 5.9241 -1.8540 0.9097 33 1 6.5160 -1.2755 -0.6661 34 1 8.1985 0.1367 0.4832 35 1 7.6073 -0.4414 2.0595 36 1 11.2686 -0.7333 2.3221 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000589793715.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:47:37 Heat of formation + Delta-G solvation = -210.847247 kcal Electronic energy + Delta-G solvation = -26031.805183 eV Core-core repulsion = 21486.793600 eV Total energy + Delta-G solvation = -4545.011583 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.098 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -51.25169 -48.76981 -48.71457 -42.45202 -40.74630 -39.45803 -36.43876 -35.57575 -33.31445 -32.83694 -31.89768 -28.69665 -28.22932 -26.94160 -24.99068 -23.94165 -23.20642 -21.51043 -20.29305 -19.70740 -19.64176 -19.13577 -18.80110 -18.10430 -17.74417 -17.35432 -16.84033 -16.54762 -16.46544 -15.78799 -15.69387 -15.68162 -15.29903 -15.15833 -15.13146 -14.99965 -14.86521 -14.86033 -14.59890 -14.28043 -14.16525 -13.38552 -13.21559 -12.84219 -12.75513 -12.57299 -12.47765 -12.09473 -11.91893 -11.65102 -11.30022 -11.10477 -10.91010 -10.54681 -10.44318 -9.40670 -8.16615 -6.29920 -0.60280 -0.10737 1.29958 1.43682 1.44376 1.46307 1.56936 1.74389 1.88456 2.26282 2.41663 2.45062 2.78387 3.17340 3.27713 3.40846 3.48546 3.53697 3.86664 4.02095 4.17675 4.35392 4.37821 4.39304 4.49613 4.54145 4.76937 4.84193 5.05714 5.27213 5.52569 5.64447 5.86828 5.93646 6.18135 6.24347 6.44315 6.87670 7.02620 7.40406 8.95761 Molecular weight = 318.10amu Principal moments of inertia in cm(-1) A = 0.023138 B = 0.002647 C = 0.002428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.851399 B =10575.269091 C =11531.701863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.009 3.991 2 O -0.309 6.309 3 C 0.149 3.851 4 C -0.177 4.177 5 C 0.030 3.970 6 C 0.532 3.468 7 F -0.172 7.172 8 F -0.164 7.164 9 F -0.169 7.169 10 N -0.467 5.467 11 C 0.105 3.895 12 C 0.103 3.897 13 N -0.646 5.646 14 C 0.516 3.484 15 O -0.553 6.553 16 C -0.114 4.114 17 C 0.039 3.961 18 C -0.541 4.541 19 H 0.078 0.922 20 C -0.006 4.006 21 N -0.937 5.937 22 Si 0.971 3.029 23 H -0.273 1.273 24 H -0.289 1.289 25 H -0.255 1.255 26 H 0.078 0.922 27 H 0.131 0.869 28 H 0.071 0.929 29 H 0.189 0.811 30 H 0.173 0.827 31 H 0.435 0.565 32 H 0.113 0.887 33 H 0.116 0.884 34 H -0.012 1.012 35 H -0.014 1.014 36 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.207 2.149 -7.426 28.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 O -0.220 6.220 3 C 0.092 3.908 4 C -0.199 4.199 5 C -0.110 4.110 6 C 0.476 3.524 7 F -0.153 7.153 8 F -0.145 7.145 9 F -0.150 7.150 10 N -0.179 5.179 11 C -0.054 4.054 12 C 0.003 3.997 13 N -0.293 5.293 14 C 0.307 3.693 15 O -0.430 6.430 16 C -0.154 4.154 17 C 0.001 3.999 18 C -0.579 4.579 19 H 0.096 0.904 20 C -0.204 4.204 21 N -0.577 5.577 22 Si 0.795 3.205 23 H -0.199 1.199 24 H -0.215 1.215 25 H -0.178 1.178 26 H 0.096 0.904 27 H 0.149 0.851 28 H 0.090 0.910 29 H 0.207 0.793 30 H 0.189 0.811 31 H 0.275 0.725 32 H 0.131 0.869 33 H 0.134 0.866 34 H 0.006 0.994 35 H 0.004 0.996 36 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -26.264 3.458 -6.982 27.395 hybrid contribution 0.227 -0.950 0.147 0.988 sum -26.037 2.508 -6.835 27.036 Atomic orbital electron populations 1.23641 0.74603 1.06938 1.03238 1.86086 1.24828 1.23492 1.87558 1.18720 0.89489 0.86429 0.96132 1.21876 1.03395 0.89676 1.04953 1.20871 0.91384 0.92987 1.05782 1.17666 0.77378 0.83195 0.74140 1.93220 1.69471 1.57014 1.95594 1.93233 1.69375 1.96663 1.55279 1.93237 1.78813 1.96403 1.46561 1.67265 1.05694 1.32717 1.12261 1.22932 1.01100 0.85069 0.96314 1.18579 0.88567 0.89297 1.03242 1.43478 1.13079 1.11472 1.61240 1.21766 0.81411 0.90881 0.75231 1.90666 1.74380 1.34872 1.43052 1.21684 0.94553 0.94291 1.04863 1.18734 0.91090 0.95634 0.94414 1.21703 0.98191 0.99723 1.38281 0.90403 1.26092 1.00220 0.99296 0.94775 1.70170 1.17826 1.29489 1.40191 0.85365 0.78267 0.79330 0.77555 1.19853 1.21488 1.17845 0.90377 0.85098 0.90999 0.79343 0.81057 0.72519 0.86874 0.86645 0.99367 0.99571 0.92936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.05 9.84 113.37 1.12 1.17 16 2 O -0.31 -4.53 10.03 -91.56 -0.92 -5.45 16 3 C 0.15 2.95 6.75 22.85 0.15 3.11 16 4 C -0.18 -3.15 8.60 22.43 0.19 -2.96 16 5 C 0.03 0.73 6.26 42.50 0.27 0.99 16 6 C 0.53 11.54 3.31 71.24 0.24 11.77 16 7 F -0.17 -4.44 16.85 44.97 0.76 -3.68 16 8 F -0.16 -3.04 17.15 44.97 0.77 -2.27 16 9 F -0.17 -3.44 17.28 44.97 0.78 -2.67 16 10 N -0.47 -14.21 9.73 -183.61 -1.79 -16.00 16 11 C 0.10 3.30 9.90 84.76 0.84 4.14 16 12 C 0.10 2.71 6.47 38.26 0.25 2.96 16 13 N -0.65 -16.41 5.31 -302.84 -1.61 -18.02 16 14 C 0.52 17.96 7.64 87.66 0.67 18.63 16 15 O -0.55 -24.48 13.18 -3.09 -0.04 -24.52 16 16 C -0.11 -4.10 5.64 29.85 0.17 -3.93 16 17 C 0.04 2.04 4.26 29.85 0.13 2.16 16 18 C -0.54 -29.41 9.11 25.60 0.23 -29.18 16 19 H 0.08 3.81 7.74 -2.91 -0.02 3.79 16 20 C -0.01 -0.35 5.46 84.65 0.46 0.11 16 21 N -0.94 -58.16 13.29 21.45 0.28 -57.87 16 22 Si 0.97 43.20 29.54 68.60 2.03 45.23 16 23 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 24 H -0.29 -12.88 7.11 99.48 0.71 -12.17 16 25 H -0.25 -10.46 7.11 99.48 0.71 -9.75 16 26 H 0.08 0.23 7.70 -2.39 -0.02 0.21 16 27 H 0.13 0.22 8.14 -2.39 -0.02 0.20 16 28 H 0.07 0.31 7.72 -2.39 -0.02 0.29 16 29 H 0.19 1.81 6.46 -2.91 -0.02 1.79 16 30 H 0.17 6.26 5.80 -2.92 -0.02 6.25 16 31 H 0.43 7.83 8.43 -92.71 -0.78 7.05 16 32 H 0.11 3.46 8.14 -2.39 -0.02 3.44 16 33 H 0.12 3.52 8.14 -2.39 -0.02 3.50 16 34 H -0.01 -0.72 8.10 -2.39 -0.02 -0.74 16 35 H -0.01 -0.84 8.10 -2.39 -0.02 -0.86 16 36 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 Total: -1.00 -75.12 329.71 5.35 -69.76 By element: Atomic # 1 Polarization: 6.12 SS G_CDS: 0.38 Total: 6.50 kcal Atomic # 6 Polarization: 4.27 SS G_CDS: 4.71 Total: 8.99 kcal Atomic # 7 Polarization: -88.77 SS G_CDS: -3.11 Total: -91.88 kcal Atomic # 8 Polarization: -29.01 SS G_CDS: -0.96 Total: -29.97 kcal Atomic # 9 Polarization: -10.93 SS G_CDS: 2.31 Total: -8.62 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 2.03 Total: 45.23 kcal Total: -75.12 5.35 -69.76 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589793715.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -141.083 kcal (2) G-P(sol) polarization free energy of solvation -75.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -216.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -210.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds