Wall clock time and date at job start Tue Mar 31 2020 11:43:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46906 * 110.99793 * 2 1 4 4 C 1.50696 * 109.47351 * 293.95574 * 3 2 1 5 5 H 1.08007 * 119.99780 * 0.02562 * 4 3 2 6 6 C 1.37878 * 120.00506 * 180.02562 * 4 3 2 7 7 N 1.31515 * 119.99253 * 359.97438 * 6 4 3 8 8 Si 1.86795 * 120.00341 * 180.02562 * 6 4 3 9 9 H 1.48502 * 109.47279 * 359.97438 * 8 6 4 10 10 H 1.48497 * 109.47075 * 119.99817 * 8 6 4 11 11 H 1.48496 * 109.46942 * 240.00005 * 8 6 4 12 12 C 1.46898 * 111.00443 * 123.95328 * 2 1 3 13 13 C 1.53004 * 109.46619 * 66.04574 * 12 2 1 14 14 H 1.08992 * 109.47535 * 304.99943 * 13 12 2 15 15 O 1.42897 * 109.47256 * 65.00537 * 13 12 2 16 16 C 1.52998 * 109.46799 * 184.99872 * 13 12 2 17 17 N 1.46903 * 109.47302 * 179.97438 * 16 13 12 18 18 C 1.46900 * 111.00131 * 180.02562 * 17 16 13 19 19 C 1.50702 * 109.46790 * 180.02562 * 18 17 16 20 20 C 1.33341 * 125.19134 * 90.00535 * 19 18 17 21 21 C 1.38477 * 114.93222 * 179.97438 * 20 19 18 22 22 C 1.33506 * 114.88077 * 359.97438 * 21 20 19 23 23 Cl 1.73596 * 125.20439 * 180.02562 * 22 21 20 24 24 S 1.75879 * 125.18653 * 269.69232 * 19 18 17 25 25 H 1.09002 * 109.47401 * 59.99808 * 1 2 3 26 26 H 1.09001 * 109.46874 * 299.99821 * 1 2 3 27 27 H 1.09004 * 109.46970 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.46995 * 53.95554 * 3 2 1 29 29 H 1.09001 * 109.46848 * 173.95560 * 3 2 1 30 30 H 0.96999 * 119.99606 * 179.97438 * 7 6 4 31 31 H 1.08994 * 109.47410 * 186.04624 * 12 2 1 32 32 H 1.08999 * 109.47216 * 306.04953 * 12 2 1 33 33 H 0.96701 * 114.00549 * 59.99438 * 15 13 12 34 34 H 1.08996 * 109.47622 * 300.00336 * 16 13 12 35 35 H 1.09009 * 109.47203 * 60.00381 * 16 13 12 36 36 H 1.00904 * 111.00240 * 303.96453 * 17 16 13 37 37 H 1.09000 * 109.47282 * 300.00189 * 18 17 16 38 38 H 1.08998 * 109.46842 * 60.00449 * 18 17 16 39 39 H 1.07996 * 122.53715 * 359.94698 * 20 19 18 40 40 H 1.08000 * 122.55830 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0472 -1.2984 5 1 1.0738 1.5116 -2.0484 6 6 2.0275 3.3493 -1.5289 7 7 2.7127 4.0016 -0.6153 8 14 1.5825 4.1870 -3.1380 9 1 0.8143 3.2447 -3.9908 10 1 0.7559 5.3886 -2.8584 11 1 2.8239 4.5936 -3.8443 12 6 1.9956 -0.7659 1.1375 13 6 1.6315 -2.2426 0.9702 14 1 0.5533 -2.3389 0.8432 15 8 2.2957 -2.7695 -0.1801 16 6 2.0701 -3.0199 2.2129 17 7 1.7201 -4.4376 2.0526 18 6 2.1267 -5.2166 3.2299 19 6 1.7527 -6.6625 3.0289 20 6 2.5324 -7.5871 2.4675 21 6 1.9749 -8.8523 2.3902 22 6 0.7411 -8.9539 2.8902 23 17 -0.2051 -10.4087 2.9320 24 16 0.2241 -7.3898 3.5062 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.5611 1.9274 0.8309 29 1 3.0797 1.3445 0.1082 30 1 2.9879 4.9175 -0.7776 31 1 3.0798 -0.6610 1.1755 32 1 1.5612 -0.3873 2.0628 33 1 3.2602 -2.7166 -0.1361 34 1 3.1484 -2.9236 2.3400 35 1 1.5636 -2.6180 3.0905 36 1 0.7341 -4.5481 1.8691 37 1 3.2054 -5.1359 3.3641 38 1 1.6205 -4.8295 4.1141 39 1 3.5237 -7.3659 2.1005 40 1 2.4981 -9.6926 1.9584 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591240525.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:43:28 Heat of formation + Delta-G solvation = -38.600723 kcal Electronic energy + Delta-G solvation = -21133.302086 eV Core-core repulsion = 17713.769529 eV Total energy + Delta-G solvation = -3419.532557 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 318.091 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.65490 -39.06894 -37.78436 -37.27738 -36.00977 -34.61064 -32.04889 -30.35273 -28.95776 -27.61390 -26.26882 -24.78712 -23.60108 -22.69805 -21.75844 -20.47234 -18.60207 -18.56145 -17.50869 -17.03429 -16.84647 -16.61734 -15.97439 -15.96044 -15.78506 -15.19673 -15.04428 -14.77214 -14.50335 -14.22367 -13.93202 -13.82544 -13.38802 -13.27699 -13.17380 -12.87207 -12.65749 -12.58630 -12.50655 -12.44650 -12.38035 -11.99694 -11.97452 -11.70397 -11.59444 -11.36397 -10.65646 -10.62349 -9.67090 -9.52160 -9.33900 -8.94471 -8.20993 -6.30515 -0.22094 0.09700 0.80799 1.22891 1.40669 1.41648 1.55456 1.63663 2.40366 2.97467 3.11585 3.47288 3.69799 3.81697 3.95946 4.10556 4.23052 4.33544 4.36433 4.46177 4.54725 4.58426 4.67095 4.70626 4.73089 4.79696 4.96849 5.06850 5.16321 5.17052 5.18957 5.32376 5.39060 5.65307 5.92018 6.05939 6.29674 6.33435 6.65387 6.85987 7.08223 7.39231 8.90083 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.037153 B = 0.001847 C = 0.001825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 753.465163 B =15157.879591 C =15335.855894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 N -0.542 5.542 3 C 0.207 3.793 4 C -0.523 4.523 5 H 0.060 0.940 6 C 0.000 4.000 7 N -0.934 5.934 8 Si 0.969 3.031 9 H -0.265 1.265 10 H -0.278 1.278 11 H -0.278 1.278 12 C 0.024 3.976 13 C 0.128 3.872 14 H 0.089 0.911 15 O -0.554 6.554 16 C 0.038 3.962 17 N -0.679 5.679 18 C 0.131 3.869 19 C -0.170 4.170 20 C -0.117 4.117 21 C -0.117 4.117 22 C -0.165 4.165 23 Cl -0.018 7.018 24 S 0.138 5.862 25 H 0.053 0.947 26 H 0.010 0.990 27 H 0.077 0.923 28 H -0.038 1.038 29 H 0.005 0.995 30 H 0.264 0.736 31 H 0.070 0.930 32 H 0.033 0.967 33 H 0.379 0.621 34 H 0.088 0.912 35 H 0.048 0.952 36 H 0.342 0.658 37 H 0.105 0.895 38 H 0.050 0.950 39 H 0.163 0.837 40 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.244 -26.930 11.672 29.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 N -0.266 5.266 3 C 0.081 3.919 4 C -0.561 4.561 5 H 0.078 0.922 6 C -0.198 4.198 7 N -0.575 5.575 8 Si 0.794 3.206 9 H -0.189 1.189 10 H -0.203 1.203 11 H -0.203 1.203 12 C -0.105 4.105 13 C 0.068 3.932 14 H 0.107 0.893 15 O -0.359 6.359 16 C -0.092 4.092 17 N -0.311 5.311 18 C 0.001 3.999 19 C -0.288 4.288 20 C -0.147 4.147 21 C -0.149 4.149 22 C -0.308 4.308 23 Cl 0.011 6.989 24 S 0.401 5.599 25 H 0.072 0.928 26 H 0.029 0.971 27 H 0.096 0.904 28 H -0.021 1.021 29 H 0.023 0.977 30 H 0.073 0.927 31 H 0.088 0.912 32 H 0.051 0.949 33 H 0.227 0.773 34 H 0.106 0.894 35 H 0.067 0.933 36 H 0.160 0.840 37 H 0.123 0.877 38 H 0.068 0.932 39 H 0.180 0.820 40 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -3.461 -26.866 11.445 29.406 hybrid contribution 0.654 0.921 0.305 1.171 sum -2.807 -25.944 11.751 28.619 Atomic orbital electron populations 1.22229 0.87938 1.00832 0.99805 1.61929 1.07908 1.14906 1.41822 1.19401 0.93707 0.83917 0.94855 1.21510 1.34669 0.97480 1.02442 0.92169 1.25913 0.95074 0.98072 1.00714 1.70084 1.39433 1.11898 1.36069 0.85332 0.78104 0.78148 0.79025 1.18927 1.20340 1.20317 1.22841 1.00439 0.95299 0.91938 1.21746 0.97302 0.88721 0.85431 0.89328 1.86563 1.24023 1.83822 1.41533 1.22562 1.02443 0.87545 0.96643 1.60387 1.24036 1.08407 1.38241 1.20453 1.02430 0.85552 0.91514 1.24601 0.97115 1.00201 1.06854 1.20198 1.02614 0.91027 1.00901 1.20472 0.93432 0.99808 1.01197 1.25363 0.98571 0.93643 1.13270 1.98367 1.70933 1.32250 1.97376 1.84433 1.17297 0.98512 1.59704 0.92815 0.97108 0.90429 1.02086 0.97679 0.92686 0.91164 0.94898 0.77346 0.89367 0.93350 0.84009 0.87690 0.93228 0.81953 0.81886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.56 9.17 127.69 1.17 2.73 16 2 N -0.54 -23.32 4.70 -927.04 -4.36 -27.68 16 3 C 0.21 11.10 4.72 85.55 0.40 11.51 16 4 C -0.52 -30.08 8.52 25.60 0.22 -29.86 16 5 H 0.06 3.45 7.10 -2.91 -0.02 3.42 16 6 C 0.00 0.01 5.46 84.65 0.46 0.47 16 7 N -0.93 -56.31 13.29 21.45 0.28 -56.03 16 8 Si 0.97 44.75 29.54 68.60 2.03 46.78 16 9 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 10 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 11 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 12 C 0.02 0.79 4.60 86.30 0.40 1.19 16 13 C 0.13 3.30 3.13 30.60 0.10 3.40 16 14 H 0.09 2.36 6.26 -2.39 -0.01 2.34 16 15 O -0.55 -16.27 13.15 -148.98 -1.96 -18.23 16 16 C 0.04 0.70 5.35 86.30 0.46 1.16 16 17 N -0.68 -11.85 6.36 -517.92 -3.29 -15.15 16 18 C 0.13 1.80 6.18 85.56 0.53 2.33 16 19 C -0.17 -2.53 6.02 24.58 0.15 -2.38 16 20 C -0.12 -1.66 10.05 21.22 0.21 -1.45 16 21 C -0.12 -1.68 10.13 21.25 0.22 -1.46 16 22 C -0.16 -2.65 7.10 66.75 0.47 -2.18 16 23 Cl -0.02 -0.27 29.29 -2.72 -0.08 -0.35 16 24 S 0.14 2.12 23.33 -56.49 -1.32 0.81 16 25 H 0.05 2.28 6.86 -2.39 -0.02 2.26 16 26 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 27 H 0.08 2.50 6.21 -2.38 -0.01 2.49 16 28 H -0.04 -2.22 8.12 -2.39 -0.02 -2.24 16 29 H 0.01 0.29 7.93 -2.39 -0.02 0.27 16 30 H 0.26 14.91 8.31 -92.71 -0.77 14.14 16 31 H 0.07 2.30 7.93 -2.39 -0.02 2.28 16 32 H 0.03 1.05 8.12 -2.39 -0.02 1.03 16 33 H 0.38 9.15 9.05 -74.06 -0.67 8.48 16 34 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 35 H 0.05 0.81 8.14 -2.38 -0.02 0.79 16 36 H 0.34 6.16 8.72 -89.69 -0.78 5.38 16 37 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 38 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 39 H 0.16 1.85 8.06 -2.91 -0.02 1.83 16 40 H 0.16 1.76 8.06 -2.91 -0.02 1.73 16 Total: -1.00 -66.85 362.81 -4.30 -71.15 By element: Atomic # 1 Polarization: 13.65 SS G_CDS: -0.39 Total: 13.26 kcal Atomic # 6 Polarization: -19.34 SS G_CDS: 4.79 Total: -14.55 kcal Atomic # 7 Polarization: -91.49 SS G_CDS: -7.37 Total: -98.85 kcal Atomic # 8 Polarization: -16.27 SS G_CDS: -1.96 Total: -18.23 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.78 kcal Atomic # 16 Polarization: 2.12 SS G_CDS: -1.32 Total: 0.81 kcal Atomic # 17 Polarization: -0.27 SS G_CDS: -0.08 Total: -0.35 kcal Total: -66.85 -4.30 -71.15 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591240525.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.551 kcal (2) G-P(sol) polarization free energy of solvation -66.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds