Wall clock time and date at job start Tue Mar 31 2020 11:43:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46906 * 110.99728 * 2 1 4 4 C 1.50699 * 109.47140 * 66.04805 * 3 2 1 5 5 H 1.08003 * 119.99962 * 359.97438 * 4 3 2 6 6 C 1.37873 * 119.99861 * 180.02562 * 4 3 2 7 7 N 1.31522 * 120.00244 * 359.97438 * 6 4 3 8 8 Si 1.86803 * 119.99980 * 180.02562 * 6 4 3 9 9 H 1.48500 * 109.47229 * 89.99965 * 8 6 4 10 10 H 1.48500 * 109.46876 * 209.99805 * 8 6 4 11 11 H 1.48499 * 109.47161 * 329.99530 * 8 6 4 12 12 C 1.46905 * 110.99850 * 236.04849 * 2 1 3 13 13 C 1.53000 * 109.47114 * 293.94896 * 12 2 1 14 14 H 1.09000 * 109.46550 * 60.00064 * 13 12 2 15 15 O 1.42901 * 109.46928 * 300.00575 * 13 12 2 16 16 C 1.52996 * 109.47000 * 180.02562 * 13 12 2 17 17 N 1.46899 * 109.46798 * 185.00066 * 16 13 12 18 18 C 1.46901 * 111.00076 * 179.97438 * 17 16 13 19 19 C 1.50693 * 109.47360 * 180.02562 * 18 17 16 20 20 C 1.33348 * 125.19037 * 89.72257 * 19 18 17 21 21 C 1.38474 * 114.93113 * 179.79365 * 20 19 18 22 22 C 1.33497 * 114.88190 * 0.49736 * 21 20 19 23 23 Cl 1.73606 * 125.20907 * 179.75555 * 22 21 20 24 24 S 1.75883 * 125.18807 * 270.02538 * 19 18 17 25 25 H 1.08996 * 109.47030 * 59.99921 * 1 2 3 26 26 H 1.08999 * 109.46702 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.46890 * 299.99929 * 1 2 3 28 28 H 1.09004 * 109.47040 * 186.04743 * 3 2 1 29 29 H 1.09000 * 109.47033 * 306.04695 * 3 2 1 30 30 H 0.96992 * 120.00038 * 179.97438 * 7 6 4 31 31 H 1.08997 * 109.46807 * 53.95411 * 12 2 1 32 32 H 1.09000 * 109.46636 * 173.95277 * 12 2 1 33 33 H 0.96697 * 113.99735 * 299.99403 * 15 13 12 34 34 H 1.08995 * 109.47058 * 304.99907 * 16 13 12 35 35 H 1.08998 * 109.46953 * 65.00454 * 16 13 12 36 36 H 1.00896 * 111.00687 * 303.95477 * 17 16 13 37 37 H 1.09005 * 109.47140 * 300.00367 * 18 17 16 38 38 H 1.09001 * 109.46992 * 59.99753 * 18 17 16 39 39 H 1.08001 * 122.53845 * 359.97324 * 20 19 18 40 40 H 1.08004 * 122.55723 * 180.23172 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0472 1.2984 5 1 1.0739 1.5115 2.0485 6 6 2.0267 3.3495 1.5284 7 7 2.7118 4.0020 0.6149 8 14 1.5829 4.1868 3.1382 9 1 2.6604 3.9508 4.1325 10 1 1.4300 5.6464 2.9112 11 1 0.3056 3.6291 3.6507 12 6 1.9954 -0.7660 -1.1377 13 6 1.6315 -2.2426 -0.9704 14 1 0.5472 -2.3474 -0.9323 15 8 2.2010 -2.7391 0.2426 16 6 2.1803 -3.0404 -2.1549 17 7 1.7299 -4.4352 -2.0566 18 6 2.2384 -5.2331 -3.1803 19 6 1.7564 -6.6545 -3.0458 20 6 0.6181 -7.1310 -3.5510 21 6 0.3864 -8.4736 -3.3034 22 6 1.3333 -9.0843 -2.5874 23 17 1.3121 -10.7558 -2.1187 24 16 2.6059 -7.9364 -2.1921 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 3.0797 1.3445 -0.1083 29 1 1.5610 1.9274 -0.8309 30 1 2.9857 4.9183 0.7765 31 1 1.5611 -0.3871 -2.0628 32 1 3.0797 -0.6610 -1.1757 33 1 3.1653 -2.6770 0.2786 34 1 1.8160 -2.6058 -3.0857 35 1 3.2698 -3.0086 -2.1409 36 1 2.0000 -4.8410 -1.1732 37 1 1.8742 -4.8135 -4.1181 38 1 3.3283 -5.2165 -3.1739 39 1 -0.0698 -6.5170 -4.1134 40 1 -0.4953 -8.9864 -3.6586 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591240526.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:43:31 Heat of formation + Delta-G solvation = -17.351925 kcal Electronic energy + Delta-G solvation = -21138.660036 eV Core-core repulsion = 17720.048896 eV Total energy + Delta-G solvation = -3418.611140 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 318.091 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -38.75259 -38.19437 -37.07320 -36.00514 -34.98638 -32.52410 -31.16417 -29.19502 -27.15064 -26.42201 -25.06357 -23.53842 -22.80847 -21.34593 -20.16705 -19.86707 -17.95126 -16.71295 -16.43023 -15.99950 -15.84181 -15.27011 -14.93335 -14.71330 -14.38962 -14.05200 -13.93365 -13.69812 -13.46430 -13.21506 -12.82732 -12.56892 -12.51401 -11.94356 -11.86833 -11.82766 -11.39635 -11.32302 -11.13156 -11.08071 -10.89482 -10.76248 -10.63653 -10.29800 -10.01988 -9.65067 -9.15043 -9.02343 -8.89756 -8.65386 -8.43000 -7.19579 -6.02551 -4.03423 0.40258 0.71423 1.42497 1.85069 2.23748 3.33125 3.38740 3.43047 3.89221 4.37236 4.43393 4.63414 4.73886 4.87871 4.94998 5.13023 5.14215 5.22386 5.29239 5.34852 5.47611 5.55102 5.61303 5.71338 5.75582 5.97541 6.05156 6.20160 6.31830 6.40569 6.67873 6.79163 7.11221 7.26730 7.32879 7.80505 7.94550 8.10068 8.20666 8.55776 9.04751 9.60831 11.08409 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.036479 B = 0.001854 C = 0.001828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.382504 B =15095.386792 C =15315.280385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 N -0.529 5.529 3 C 0.193 3.807 4 C -0.505 4.505 5 H 0.064 0.936 6 C 0.053 3.947 7 N -0.901 5.901 8 Si 0.899 3.101 9 H -0.280 1.280 10 H -0.288 1.288 11 H -0.273 1.273 12 C 0.025 3.975 13 C 0.114 3.886 14 H 0.104 0.896 15 O -0.546 6.546 16 C 0.027 3.973 17 N -0.679 5.679 18 C 0.128 3.872 19 C -0.165 4.165 20 C -0.114 4.114 21 C -0.116 4.116 22 C -0.151 4.151 23 Cl -0.018 7.018 24 S 0.148 5.852 25 H 0.009 0.991 26 H 0.048 0.952 27 H 0.073 0.927 28 H 0.028 0.972 29 H -0.011 1.011 30 H 0.261 0.739 31 H 0.029 0.971 32 H 0.068 0.932 33 H 0.367 0.633 34 H 0.081 0.919 35 H 0.035 0.965 36 H 0.351 0.649 37 H 0.094 0.906 38 H 0.042 0.958 39 H 0.150 0.850 40 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.880 -26.254 -11.125 28.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 N -0.254 5.254 3 C 0.067 3.933 4 C -0.543 4.543 5 H 0.082 0.918 6 C -0.148 4.148 7 N -0.541 5.541 8 Si 0.727 3.273 9 H -0.206 1.206 10 H -0.214 1.214 11 H -0.198 1.198 12 C -0.105 4.105 13 C 0.054 3.946 14 H 0.122 0.878 15 O -0.349 6.349 16 C -0.103 4.103 17 N -0.312 5.312 18 C -0.003 4.003 19 C -0.283 4.283 20 C -0.145 4.145 21 C -0.149 4.149 22 C -0.295 4.295 23 Cl 0.011 6.989 24 S 0.410 5.590 25 H 0.028 0.972 26 H 0.066 0.934 27 H 0.091 0.909 28 H 0.046 0.954 29 H 0.007 0.993 30 H 0.070 0.930 31 H 0.047 0.953 32 H 0.087 0.913 33 H 0.213 0.787 34 H 0.100 0.900 35 H 0.053 0.947 36 H 0.170 0.830 37 H 0.112 0.888 38 H 0.061 0.939 39 H 0.168 0.832 40 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -0.508 -26.532 -10.031 28.370 hybrid contribution -0.278 0.897 -0.678 1.158 sum -0.785 -25.635 -10.708 27.793 Atomic orbital electron populations 1.22241 0.88898 0.99302 1.00690 1.62026 1.06933 1.17382 1.39013 1.19751 0.95218 0.81637 0.96647 1.21172 1.34642 0.96838 1.01674 0.91780 1.25003 0.95363 0.97365 0.97038 1.69960 1.38583 1.11444 1.34066 0.86479 0.78904 0.78339 0.83578 1.20628 1.21373 1.19830 1.22694 1.00387 0.93806 0.93621 1.21989 0.99081 0.90927 0.82645 0.87789 1.86610 1.24877 1.84844 1.38595 1.22735 0.97804 0.88825 1.00893 1.60442 1.63500 1.01948 1.05303 1.20419 0.96980 0.86345 0.96546 1.24526 0.99718 0.99155 1.04946 1.19979 0.97285 0.94354 1.02866 1.20230 0.99997 0.94689 0.99965 1.25228 1.02864 0.91453 1.09934 1.98372 1.98049 1.11660 1.90829 1.84486 1.21688 0.98910 1.53910 0.97240 0.93378 0.90851 0.95438 0.99288 0.92976 0.95271 0.91329 0.78663 0.90046 0.94701 0.83024 0.88755 0.93946 0.83230 0.83369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.74 9.16 60.06 0.55 1.29 16 2 N -0.53 -11.37 4.62 -244.36 -1.13 -12.50 16 3 C 0.19 5.02 4.72 -4.97 -0.02 5.00 16 4 C -0.50 -14.30 8.52 -34.44 -0.29 -14.60 16 5 H 0.06 1.81 7.10 -52.48 -0.37 1.44 16 6 C 0.05 1.52 5.46 -17.82 -0.10 1.42 16 7 N -0.90 -26.81 13.29 55.43 0.74 -26.07 16 8 Si 0.90 21.81 29.54 -169.99 -5.02 16.79 16 9 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 10 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 11 H -0.27 -6.52 7.11 56.52 0.40 -6.11 16 12 C 0.02 0.42 4.62 -3.82 -0.02 0.40 16 13 C 0.11 1.56 3.08 -26.73 -0.08 1.48 16 14 H 0.10 1.56 6.47 -51.93 -0.34 1.22 16 15 O -0.55 -8.03 12.72 -35.23 -0.45 -8.48 16 16 C 0.03 0.29 5.36 -3.83 -0.02 0.27 16 17 N -0.68 -6.77 6.49 -115.06 -0.75 -7.51 16 18 C 0.13 1.04 6.18 -4.98 -0.03 1.01 16 19 C -0.17 -1.39 6.02 -36.02 -0.22 -1.61 16 20 C -0.11 -0.91 10.05 -41.20 -0.41 -1.33 16 21 C -0.12 -0.92 10.13 -41.15 -0.42 -1.34 16 22 C -0.15 -1.30 7.10 29.07 0.21 -1.10 16 23 Cl -0.02 -0.14 29.29 -51.86 -1.52 -1.66 16 24 S 0.15 1.24 23.33 -107.50 -2.51 -1.27 16 25 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 26 H 0.05 0.83 6.30 -51.93 -0.33 0.51 16 27 H 0.07 1.57 6.86 -51.93 -0.36 1.22 16 28 H 0.03 0.76 7.93 -51.93 -0.41 0.35 16 29 H -0.01 -0.30 8.12 -51.93 -0.42 -0.72 16 30 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 31 H 0.03 0.48 8.12 -51.93 -0.42 0.06 16 32 H 0.07 1.13 7.93 -51.93 -0.41 0.72 16 33 H 0.37 4.37 9.04 45.56 0.41 4.78 16 34 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.03 0.34 8.14 -51.93 -0.42 -0.09 16 36 H 0.35 3.68 8.28 -39.29 -0.33 3.36 16 37 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 39 H 0.15 1.00 8.06 -52.49 -0.42 0.58 16 40 H 0.15 0.92 8.06 -52.48 -0.42 0.49 16 LS Contribution 362.28 15.07 5.46 5.46 Total: -1.00 -30.98 362.28 -11.10 -42.08 By element: Atomic # 1 Polarization: 7.35 SS G_CDS: -5.07 Total: 2.28 kcal Atomic # 6 Polarization: -8.25 SS G_CDS: -0.86 Total: -9.11 kcal Atomic # 7 Polarization: -44.95 SS G_CDS: -1.14 Total: -46.09 kcal Atomic # 8 Polarization: -8.03 SS G_CDS: -0.45 Total: -8.48 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Atomic # 16 Polarization: 1.24 SS G_CDS: -2.51 Total: -1.27 kcal Atomic # 17 Polarization: -0.14 SS G_CDS: -1.52 Total: -1.66 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -30.98 -11.10 -42.08 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591240526.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.728 kcal (2) G-P(sol) polarization free energy of solvation -30.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds