Wall clock time and date at job start Tue Mar 31 2020 11:43:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46906 * 110.99728 * 2 1 4 4 C 1.50699 * 109.47140 * 66.04805 * 3 2 1 5 5 H 1.08003 * 119.99962 * 359.97438 * 4 3 2 6 6 C 1.37873 * 119.99861 * 180.02562 * 4 3 2 7 7 N 1.31522 * 120.00244 * 359.97438 * 6 4 3 8 8 Si 1.86803 * 119.99980 * 180.02562 * 6 4 3 9 9 H 1.48500 * 109.47229 * 89.99965 * 8 6 4 10 10 H 1.48500 * 109.46876 * 209.99805 * 8 6 4 11 11 H 1.48499 * 109.47161 * 329.99530 * 8 6 4 12 12 C 1.46905 * 110.99850 * 236.04849 * 2 1 3 13 13 C 1.53000 * 109.47114 * 293.94896 * 12 2 1 14 14 H 1.09000 * 109.46550 * 60.00064 * 13 12 2 15 15 O 1.42901 * 109.46928 * 300.00575 * 13 12 2 16 16 C 1.52996 * 109.47000 * 180.02562 * 13 12 2 17 17 N 1.46899 * 109.46798 * 185.00066 * 16 13 12 18 18 C 1.46901 * 111.00076 * 179.97438 * 17 16 13 19 19 C 1.50693 * 109.47360 * 180.02562 * 18 17 16 20 20 C 1.33348 * 125.19037 * 89.72257 * 19 18 17 21 21 C 1.38474 * 114.93113 * 179.79365 * 20 19 18 22 22 C 1.33497 * 114.88190 * 0.49736 * 21 20 19 23 23 Cl 1.73606 * 125.20907 * 179.75555 * 22 21 20 24 24 S 1.75883 * 125.18807 * 270.02538 * 19 18 17 25 25 H 1.08996 * 109.47030 * 59.99921 * 1 2 3 26 26 H 1.08999 * 109.46702 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.46890 * 299.99929 * 1 2 3 28 28 H 1.09004 * 109.47040 * 186.04743 * 3 2 1 29 29 H 1.09000 * 109.47033 * 306.04695 * 3 2 1 30 30 H 0.96992 * 120.00038 * 179.97438 * 7 6 4 31 31 H 1.08997 * 109.46807 * 53.95411 * 12 2 1 32 32 H 1.09000 * 109.46636 * 173.95277 * 12 2 1 33 33 H 0.96697 * 113.99735 * 299.99403 * 15 13 12 34 34 H 1.08995 * 109.47058 * 304.99907 * 16 13 12 35 35 H 1.08998 * 109.46953 * 65.00454 * 16 13 12 36 36 H 1.00896 * 111.00687 * 303.95477 * 17 16 13 37 37 H 1.09005 * 109.47140 * 300.00367 * 18 17 16 38 38 H 1.09001 * 109.46992 * 59.99753 * 18 17 16 39 39 H 1.08001 * 122.53845 * 359.97324 * 20 19 18 40 40 H 1.08004 * 122.55723 * 180.23172 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0472 1.2984 5 1 1.0739 1.5115 2.0485 6 6 2.0267 3.3495 1.5284 7 7 2.7118 4.0020 0.6149 8 14 1.5829 4.1868 3.1382 9 1 2.6604 3.9508 4.1325 10 1 1.4300 5.6464 2.9112 11 1 0.3056 3.6291 3.6507 12 6 1.9954 -0.7660 -1.1377 13 6 1.6315 -2.2426 -0.9704 14 1 0.5472 -2.3474 -0.9323 15 8 2.2010 -2.7391 0.2426 16 6 2.1803 -3.0404 -2.1549 17 7 1.7299 -4.4352 -2.0566 18 6 2.2384 -5.2331 -3.1803 19 6 1.7564 -6.6545 -3.0458 20 6 0.6181 -7.1310 -3.5510 21 6 0.3864 -8.4736 -3.3034 22 6 1.3333 -9.0843 -2.5874 23 17 1.3121 -10.7558 -2.1187 24 16 2.6059 -7.9364 -2.1921 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 3.0797 1.3445 -0.1083 29 1 1.5610 1.9274 -0.8309 30 1 2.9857 4.9183 0.7765 31 1 1.5611 -0.3871 -2.0628 32 1 3.0797 -0.6610 -1.1757 33 1 3.1653 -2.6770 0.2786 34 1 1.8160 -2.6058 -3.0857 35 1 3.2698 -3.0086 -2.1409 36 1 2.0000 -4.8410 -1.1732 37 1 1.8742 -4.8135 -4.1181 38 1 3.3283 -5.2165 -3.1739 39 1 -0.0698 -6.5170 -4.1134 40 1 -0.4953 -8.9864 -3.6586 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591240526.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:43:30 Heat of formation + Delta-G solvation = -40.342197 kcal Electronic energy + Delta-G solvation = -21139.656969 eV Core-core repulsion = 17720.048896 eV Total energy + Delta-G solvation = -3419.608073 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 318.091 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.70262 -39.07492 -37.78586 -37.30889 -35.99552 -34.61055 -32.06626 -30.37908 -28.96349 -27.59866 -26.27787 -24.78448 -23.60083 -22.65684 -21.75347 -20.48156 -18.62084 -18.55635 -17.47737 -17.18438 -16.74873 -16.69186 -16.13884 -15.93153 -15.66906 -15.22612 -15.04723 -14.77626 -14.50284 -14.14287 -13.90549 -13.73281 -13.61236 -13.25648 -13.18470 -12.88323 -12.66156 -12.53875 -12.50994 -12.44631 -12.36197 -12.01227 -11.98759 -11.69966 -11.58921 -11.40110 -10.73772 -10.61312 -9.68218 -9.52390 -9.37698 -8.94670 -8.20583 -6.30209 -0.22271 0.09858 0.81172 1.22782 1.41337 1.42681 1.53919 1.63328 2.40444 2.97858 3.11874 3.46310 3.72547 3.74364 4.00875 4.14844 4.19068 4.28789 4.34839 4.47836 4.57215 4.59138 4.65853 4.71558 4.75060 4.83270 4.96450 5.07780 5.15020 5.17625 5.18856 5.33456 5.38708 5.65310 5.91969 6.06023 6.32250 6.33546 6.65046 6.85994 6.97651 7.39474 8.90214 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.036479 B = 0.001854 C = 0.001828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.382504 B =15095.386792 C =15315.280385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 N -0.540 5.540 3 C 0.207 3.793 4 C -0.523 4.523 5 H 0.060 0.940 6 C 0.000 4.000 7 N -0.934 5.934 8 Si 0.969 3.031 9 H -0.273 1.273 10 H -0.281 1.281 11 H -0.266 1.266 12 C 0.024 3.976 13 C 0.127 3.873 14 H 0.095 0.905 15 O -0.562 6.562 16 C 0.039 3.961 17 N -0.685 5.685 18 C 0.130 3.870 19 C -0.171 4.171 20 C -0.117 4.117 21 C -0.117 4.117 22 C -0.165 4.165 23 Cl -0.018 7.018 24 S 0.138 5.862 25 H 0.010 0.990 26 H 0.076 0.924 27 H 0.052 0.948 28 H 0.005 0.995 29 H -0.039 1.039 30 H 0.264 0.736 31 H 0.034 0.966 32 H 0.069 0.931 33 H 0.379 0.621 34 H 0.090 0.910 35 H 0.046 0.954 36 H 0.347 0.653 37 H 0.106 0.894 38 H 0.050 0.950 39 H 0.164 0.836 40 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.377 -27.116 -11.189 29.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 N -0.264 5.264 3 C 0.081 3.919 4 C -0.561 4.561 5 H 0.078 0.922 6 C -0.198 4.198 7 N -0.575 5.575 8 Si 0.794 3.206 9 H -0.199 1.199 10 H -0.207 1.207 11 H -0.190 1.190 12 C -0.105 4.105 13 C 0.067 3.933 14 H 0.113 0.887 15 O -0.367 6.367 16 C -0.091 4.091 17 N -0.318 5.318 18 C 0.000 4.000 19 C -0.289 4.289 20 C -0.148 4.148 21 C -0.149 4.149 22 C -0.309 4.309 23 Cl 0.011 6.989 24 S 0.401 5.599 25 H 0.029 0.971 26 H 0.095 0.905 27 H 0.071 0.929 28 H 0.023 0.977 29 H -0.021 1.021 30 H 0.073 0.927 31 H 0.053 0.947 32 H 0.087 0.913 33 H 0.227 0.773 34 H 0.109 0.891 35 H 0.065 0.935 36 H 0.166 0.834 37 H 0.124 0.876 38 H 0.068 0.932 39 H 0.181 0.819 40 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -1.000 -27.424 -10.105 29.243 hybrid contribution -0.123 1.102 -0.706 1.314 sum -1.123 -26.322 -10.812 28.478 Atomic orbital electron populations 1.22203 0.87927 1.00807 0.99714 1.61930 1.07911 1.14839 1.41703 1.19403 0.93678 0.83958 0.94854 1.21474 1.34748 0.97475 1.02435 0.92168 1.25910 0.95089 0.98059 1.00695 1.70077 1.39430 1.11886 1.36076 0.85386 0.78931 0.77250 0.79069 1.19850 1.20687 1.19019 1.22821 1.00298 0.95286 0.92132 1.21801 0.98643 0.89039 0.83802 0.88741 1.86573 1.26118 1.84738 1.39287 1.22533 0.98325 0.88808 0.99413 1.60419 1.63874 1.01746 1.05732 1.20452 0.97449 0.85912 0.96187 1.24612 0.99932 0.99219 1.05127 1.20204 0.97338 0.94531 1.02698 1.20469 1.00278 0.94801 0.99366 1.25375 1.03262 0.91636 1.10579 1.98368 1.98062 1.11620 1.90873 1.84485 1.21990 0.99243 1.54180 0.97147 0.90532 0.92886 0.97688 1.02100 0.92694 0.94744 0.91267 0.77300 0.89131 0.93539 0.83448 0.87622 0.93198 0.81856 0.81824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.65 9.16 127.69 1.17 2.82 16 2 N -0.54 -23.22 4.62 -927.03 -4.28 -27.50 16 3 C 0.21 11.08 4.72 85.56 0.40 11.49 16 4 C -0.52 -30.04 8.52 25.60 0.22 -29.83 16 5 H 0.06 3.43 7.10 -2.91 -0.02 3.41 16 6 C 0.00 0.02 5.46 84.65 0.46 0.48 16 7 N -0.93 -56.28 13.29 21.45 0.28 -55.99 16 8 Si 0.97 44.70 29.54 68.60 2.03 46.72 16 9 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 10 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 11 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 12 C 0.02 0.78 4.62 86.30 0.40 1.18 16 13 C 0.13 3.28 3.08 30.59 0.09 3.37 16 14 H 0.09 2.65 6.47 -2.39 -0.02 2.63 16 15 O -0.56 -15.71 12.72 -148.98 -1.90 -17.61 16 16 C 0.04 0.73 5.36 86.30 0.46 1.19 16 17 N -0.69 -12.15 6.49 -517.95 -3.36 -15.51 16 18 C 0.13 1.82 6.18 85.55 0.53 2.34 16 19 C -0.17 -2.56 6.02 24.58 0.15 -2.42 16 20 C -0.12 -1.64 10.05 21.22 0.21 -1.43 16 21 C -0.12 -1.66 10.13 21.25 0.22 -1.44 16 22 C -0.16 -2.66 7.10 66.75 0.47 -2.19 16 23 Cl -0.02 -0.27 29.29 -2.72 -0.08 -0.35 16 24 S 0.14 2.18 23.33 -56.49 -1.32 0.86 16 25 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 26 H 0.08 2.56 6.30 -2.39 -0.02 2.54 16 27 H 0.05 2.27 6.86 -2.39 -0.02 2.26 16 28 H 0.01 0.29 7.93 -2.38 -0.02 0.27 16 29 H -0.04 -2.24 8.12 -2.39 -0.02 -2.25 16 30 H 0.26 14.95 8.31 -92.71 -0.77 14.18 16 31 H 0.03 1.10 8.12 -2.39 -0.02 1.08 16 32 H 0.07 2.24 7.93 -2.39 -0.02 2.23 16 33 H 0.38 8.49 9.04 -74.06 -0.67 7.82 16 34 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 35 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 36 H 0.35 6.65 8.28 -89.70 -0.74 5.91 16 37 H 0.11 1.25 8.14 -2.38 -0.02 1.23 16 38 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 39 H 0.16 1.78 8.06 -2.91 -0.02 1.76 16 40 H 0.16 1.71 8.06 -2.91 -0.02 1.69 16 Total: -1.00 -66.14 362.28 -4.19 -70.33 By element: Atomic # 1 Polarization: 13.84 SS G_CDS: -0.35 Total: 13.49 kcal Atomic # 6 Polarization: -19.23 SS G_CDS: 4.79 Total: -14.44 kcal Atomic # 7 Polarization: -91.64 SS G_CDS: -7.36 Total: -99.00 kcal Atomic # 8 Polarization: -15.71 SS G_CDS: -1.90 Total: -17.61 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.72 kcal Atomic # 16 Polarization: 2.18 SS G_CDS: -1.32 Total: 0.86 kcal Atomic # 17 Polarization: -0.27 SS G_CDS: -0.08 Total: -0.35 kcal Total: -66.14 -4.19 -70.33 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591240526.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.989 kcal (2) G-P(sol) polarization free energy of solvation -66.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds