Wall clock time and date at job start Tue Mar 31 2020 11:50:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34225 * 117.00249 * 2 1 4 4 O 1.20831 * 119.99617 * 359.97438 * 3 2 1 5 5 C 1.50703 * 120.00213 * 179.97438 * 3 2 1 6 6 N 1.46497 * 109.46837 * 183.52368 * 5 3 2 7 7 C 1.36939 * 119.99800 * 269.57175 * 6 5 3 8 8 H 1.07999 * 119.99974 * 325.97037 * 7 6 5 9 9 C 1.38813 * 119.99908 * 145.97471 * 7 6 5 10 10 N 1.31619 * 119.99959 * 159.26283 * 9 7 6 11 11 Si 1.86806 * 119.99943 * 339.26833 * 9 7 6 12 12 H 1.48500 * 109.47220 * 95.15909 * 11 9 7 13 13 H 1.48493 * 109.47104 * 215.16027 * 11 9 7 14 14 H 1.48504 * 109.46956 * 335.16048 * 11 9 7 15 15 C 1.46496 * 120.00069 * 89.57752 * 6 5 3 16 16 C 1.50700 * 109.47212 * 84.26567 * 15 6 5 17 17 C 1.38676 * 120.42028 * 5.55359 * 16 15 6 18 18 C 1.38623 * 118.42059 * 179.74937 * 17 16 15 19 19 C 1.38224 * 119.16574 * 0.25843 * 18 17 16 20 20 N 1.31860 * 120.76158 * 0.02562 * 19 18 17 21 21 C 1.31886 * 121.72514 * 359.97438 * 20 19 18 22 22 C 1.50698 * 119.61658 * 179.97438 * 21 20 19 23 23 F 1.39895 * 109.46970 * 0.67484 * 22 21 20 24 24 F 1.39900 * 109.47266 * 120.67466 * 22 21 20 25 25 F 1.39902 * 109.46707 * 240.67620 * 22 21 20 26 26 H 1.09000 * 109.47020 * 300.00366 * 1 2 3 27 27 H 1.08998 * 109.46927 * 60.00516 * 1 2 3 28 28 H 1.08999 * 109.47439 * 180.02562 * 1 2 3 29 29 H 1.08993 * 109.46999 * 63.52415 * 5 3 2 30 30 H 1.09005 * 109.46433 * 303.52279 * 5 3 2 31 31 H 0.97002 * 119.99825 * 180.02562 * 10 9 7 32 32 H 1.09005 * 109.47394 * 324.26700 * 15 6 5 33 33 H 1.09001 * 109.47408 * 204.26160 * 15 6 5 34 34 H 1.08003 * 120.78654 * 0.02684 * 17 16 15 35 35 H 1.08003 * 120.41712 * 180.27089 * 18 17 16 36 36 H 1.07993 * 119.61980 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5664 1.2748 0.0006 6 7 3.9818 2.6771 0.0854 7 6 4.1811 3.4025 -1.0589 8 1 4.5730 2.9205 -1.9424 9 6 3.8796 4.7572 -1.0832 10 7 4.4252 5.5367 -1.9926 11 14 2.6995 5.4741 0.1750 12 1 3.4704 6.0315 1.3154 13 1 1.8990 6.5539 -0.4561 14 1 1.7912 4.4068 0.6661 15 6 4.1841 3.3032 1.3942 16 6 5.5740 2.9956 1.8888 17 6 6.4750 2.3223 1.0777 18 6 7.7442 2.0655 1.5726 19 6 8.0655 2.4814 2.8510 20 7 7.1812 3.1144 3.5966 21 6 5.9649 3.3756 3.1586 22 6 4.9918 4.1016 4.0514 23 9 5.6107 4.4006 5.2699 24 9 4.5857 5.2880 3.4312 25 9 3.8757 3.2901 4.2819 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 3.9536 0.8361 -0.9190 30 1 3.9585 0.7272 0.8577 31 1 4.2148 6.4834 -2.0094 32 1 3.4522 2.9124 2.1011 33 1 4.0615 4.3825 1.3035 34 1 6.1959 2.0094 0.0823 35 1 8.4728 1.5473 0.9668 36 1 9.0523 2.2856 3.2437 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599315640.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:50:39 Heat of formation + Delta-G solvation = -155.438064 kcal Electronic energy + Delta-G solvation = -28177.680731 eV Core-core repulsion = 23635.071870 eV Total energy + Delta-G solvation = -4542.608861 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.098 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -49.93688 -47.44413 -47.38526 -40.24239 -39.66315 -36.70750 -35.44280 -32.49873 -32.38924 -31.64818 -28.79610 -27.11444 -26.36716 -25.85666 -23.13109 -22.22670 -21.76289 -20.02817 -18.42575 -18.29980 -18.26756 -17.26323 -16.94833 -16.40227 -16.02309 -15.87030 -15.40723 -15.34071 -14.57511 -14.28844 -14.21598 -14.01310 -13.84018 -13.75363 -13.54369 -13.45975 -13.35974 -13.21755 -12.75694 -12.55237 -12.42838 -12.35912 -11.79224 -11.62826 -11.42857 -11.02364 -10.50898 -10.36021 -10.29009 -10.12595 -9.61909 -9.53058 -9.40665 -8.86734 -8.66985 -7.37878 -6.17778 -3.67718 0.92734 1.42946 2.73689 2.96353 3.23383 3.31855 3.48901 3.67932 3.70674 3.76146 4.18619 4.39449 4.51534 4.63106 4.77558 5.08902 5.15291 5.19882 5.25107 5.36697 5.43254 5.48243 5.50358 5.67642 5.74347 5.83766 5.85419 6.00386 6.12377 6.34770 6.51272 6.73787 6.97373 7.65560 7.80341 8.05323 8.48082 8.65553 9.45311 9.70005 10.94547 Molecular weight = 318.10amu Principal moments of inertia in cm(-1) A = 0.011621 B = 0.006277 C = 0.005853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2408.848462 B = 4459.588859 C = 4782.892215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.378 6.378 3 C 0.414 3.586 4 O -0.485 6.485 5 C 0.151 3.849 6 N -0.566 5.566 7 C -0.290 4.290 8 H 0.093 0.907 9 C 0.051 3.949 10 N -0.888 5.888 11 Si 0.847 3.153 12 H -0.276 1.276 13 H -0.299 1.299 14 H -0.231 1.231 15 C 0.152 3.848 16 C -0.081 4.081 17 C -0.043 4.043 18 C -0.145 4.145 19 C 0.083 3.917 20 N -0.450 5.450 21 C 0.019 3.981 22 C 0.518 3.482 23 F -0.168 7.168 24 F -0.167 7.167 25 F -0.174 7.174 26 H 0.053 0.947 27 H 0.056 0.944 28 H 0.089 0.911 29 H 0.102 0.898 30 H 0.084 0.916 31 H 0.267 0.733 32 H 0.069 0.931 33 H 0.093 0.907 34 H 0.163 0.837 35 H 0.141 0.859 36 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.692 -10.069 8.160 13.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.295 6.295 3 C 0.253 3.747 4 O -0.370 6.370 5 C 0.021 3.979 6 N -0.285 5.285 7 C -0.417 4.417 8 H 0.110 0.890 9 C -0.152 4.152 10 N -0.526 5.526 11 Si 0.676 3.324 12 H -0.204 1.204 13 H -0.227 1.227 14 H -0.154 1.154 15 C 0.025 3.975 16 C -0.086 4.086 17 C -0.069 4.069 18 C -0.165 4.165 19 C -0.075 4.075 20 N -0.158 5.158 21 C -0.120 4.120 22 C 0.463 3.537 23 F -0.149 7.149 24 F -0.149 7.149 25 F -0.156 7.156 26 H 0.072 0.928 27 H 0.075 0.925 28 H 0.108 0.892 29 H 0.120 0.880 30 H 0.102 0.898 31 H 0.077 0.923 32 H 0.087 0.913 33 H 0.110 0.890 34 H 0.181 0.819 35 H 0.159 0.841 36 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 2.662 -9.276 8.916 13.139 hybrid contribution -1.399 0.651 -0.155 1.551 sum 1.262 -8.625 8.761 12.359 Atomic orbital electron populations 1.23053 0.78644 1.02349 1.01912 1.86604 1.21983 1.35899 1.85042 1.26688 0.94616 0.80952 0.72468 1.90694 1.66782 1.36041 1.43437 1.21081 0.84787 0.88698 1.03301 1.44106 1.73775 1.08467 1.02162 1.18771 1.39902 0.91396 0.91659 0.88964 1.25375 0.96398 0.96778 0.96657 1.69803 1.41529 1.05272 1.36007 0.87428 0.83703 0.79946 0.81356 1.20420 1.22740 1.15418 1.20565 0.89331 0.99874 0.87700 1.21812 1.00600 0.94235 0.91904 1.21785 0.91250 0.93276 1.00625 1.22416 0.97615 0.99706 0.96773 1.22619 0.98185 0.95355 0.91386 1.67090 1.00687 1.11195 1.36851 1.20633 0.93633 1.04183 0.93539 1.18012 0.79518 0.77399 0.78786 1.93187 1.82449 1.93443 1.45806 1.93293 1.91084 1.48121 1.82359 1.93189 1.54591 1.73045 1.94732 0.92781 0.92536 0.89216 0.87975 0.89842 0.92286 0.91300 0.88978 0.81946 0.84095 0.82147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.47 10.56 101.05 1.07 1.53 16 2 O -0.38 -6.14 10.57 -39.24 -0.41 -6.56 16 3 C 0.41 7.91 8.02 36.01 0.29 8.20 16 4 O -0.49 -11.24 14.46 -18.75 -0.27 -11.51 16 5 C 0.15 2.60 5.73 -5.19 -0.03 2.57 16 6 N -0.57 -12.00 0.48 -175.99 -0.08 -12.08 16 7 C -0.29 -7.31 9.51 -15.06 -0.14 -7.45 16 8 H 0.09 2.43 8.06 -52.49 -0.42 2.00 16 9 C 0.05 1.42 5.33 -17.43 -0.09 1.33 16 10 N -0.89 -25.95 13.97 55.49 0.78 -25.18 16 11 Si 0.85 21.89 24.62 -169.99 -4.19 17.71 16 12 H -0.28 -6.94 5.99 56.52 0.34 -6.60 16 13 H -0.30 -8.02 7.11 56.52 0.40 -7.61 16 14 H -0.23 -6.05 5.47 56.52 0.31 -5.74 16 15 C 0.15 3.16 3.40 -5.20 -0.02 3.15 16 16 C -0.08 -1.48 5.84 -104.48 -0.61 -2.09 16 17 C -0.04 -0.69 9.25 -39.28 -0.36 -1.05 16 18 C -0.15 -1.84 10.11 -39.44 -0.40 -2.24 16 19 C 0.08 1.09 11.18 -17.54 -0.20 0.90 16 20 N -0.45 -7.42 9.73 -9.47 -0.09 -7.52 16 21 C 0.02 0.33 6.26 -82.59 -0.52 -0.18 16 22 C 0.52 9.34 2.88 36.00 0.10 9.45 16 23 F -0.17 -2.88 16.85 2.25 0.04 -2.84 16 24 F -0.17 -3.32 15.18 2.25 0.03 -3.28 16 25 F -0.17 -3.02 15.68 2.25 0.04 -2.99 16 26 H 0.05 0.73 8.13 -51.93 -0.42 0.31 16 27 H 0.06 0.78 8.13 -51.93 -0.42 0.36 16 28 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.10 1.58 8.04 -51.93 -0.42 1.16 16 30 H 0.08 1.20 8.08 -51.93 -0.42 0.78 16 31 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 32 H 0.07 1.39 6.66 -51.93 -0.35 1.05 16 33 H 0.09 2.19 2.07 -51.93 -0.11 2.08 16 34 H 0.16 2.62 6.41 -52.48 -0.34 2.28 16 35 H 0.14 1.29 8.06 -52.48 -0.42 0.86 16 36 H 0.16 1.49 8.06 -52.49 -0.42 1.07 16 LS Contribution 316.31 15.07 4.77 4.77 Total: -1.00 -31.98 316.31 -3.76 -35.74 By element: Atomic # 1 Polarization: 3.09 SS G_CDS: -3.45 Total: -0.36 kcal Atomic # 6 Polarization: 15.01 SS G_CDS: -0.91 Total: 14.10 kcal Atomic # 7 Polarization: -45.37 SS G_CDS: 0.60 Total: -44.78 kcal Atomic # 8 Polarization: -17.38 SS G_CDS: -0.69 Total: -18.06 kcal Atomic # 9 Polarization: -9.22 SS G_CDS: 0.11 Total: -9.11 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -4.19 Total: 17.71 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -31.98 -3.76 -35.74 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599315640.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.701 kcal (2) G-P(sol) polarization free energy of solvation -31.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds