Wall clock time and date at job start Tue Mar 31 2020 11:50:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34225 * 117.00249 * 2 1 4 4 O 1.20831 * 119.99617 * 359.97438 * 3 2 1 5 5 C 1.50703 * 120.00213 * 179.97438 * 3 2 1 6 6 N 1.46497 * 109.46837 * 183.52368 * 5 3 2 7 7 C 1.36939 * 119.99800 * 269.57175 * 6 5 3 8 8 H 1.07999 * 119.99974 * 325.97037 * 7 6 5 9 9 C 1.38813 * 119.99908 * 145.97471 * 7 6 5 10 10 N 1.31619 * 119.99959 * 159.26283 * 9 7 6 11 11 Si 1.86806 * 119.99943 * 339.26833 * 9 7 6 12 12 H 1.48500 * 109.47220 * 95.15909 * 11 9 7 13 13 H 1.48493 * 109.47104 * 215.16027 * 11 9 7 14 14 H 1.48504 * 109.46956 * 335.16048 * 11 9 7 15 15 C 1.46496 * 120.00069 * 89.57752 * 6 5 3 16 16 C 1.50700 * 109.47212 * 84.26567 * 15 6 5 17 17 C 1.38676 * 120.42028 * 5.55359 * 16 15 6 18 18 C 1.38623 * 118.42059 * 179.74937 * 17 16 15 19 19 C 1.38224 * 119.16574 * 0.25843 * 18 17 16 20 20 N 1.31860 * 120.76158 * 0.02562 * 19 18 17 21 21 C 1.31886 * 121.72514 * 359.97438 * 20 19 18 22 22 C 1.50698 * 119.61658 * 179.97438 * 21 20 19 23 23 F 1.39895 * 109.46970 * 0.67484 * 22 21 20 24 24 F 1.39900 * 109.47266 * 120.67466 * 22 21 20 25 25 F 1.39902 * 109.46707 * 240.67620 * 22 21 20 26 26 H 1.09000 * 109.47020 * 300.00366 * 1 2 3 27 27 H 1.08998 * 109.46927 * 60.00516 * 1 2 3 28 28 H 1.08999 * 109.47439 * 180.02562 * 1 2 3 29 29 H 1.08993 * 109.46999 * 63.52415 * 5 3 2 30 30 H 1.09005 * 109.46433 * 303.52279 * 5 3 2 31 31 H 0.97002 * 119.99825 * 180.02562 * 10 9 7 32 32 H 1.09005 * 109.47394 * 324.26700 * 15 6 5 33 33 H 1.09001 * 109.47408 * 204.26160 * 15 6 5 34 34 H 1.08003 * 120.78654 * 0.02684 * 17 16 15 35 35 H 1.08003 * 120.41712 * 180.27089 * 18 17 16 36 36 H 1.07993 * 119.61980 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5664 1.2748 0.0006 6 7 3.9818 2.6771 0.0854 7 6 4.1811 3.4025 -1.0589 8 1 4.5730 2.9205 -1.9424 9 6 3.8796 4.7572 -1.0832 10 7 4.4252 5.5367 -1.9926 11 14 2.6995 5.4741 0.1750 12 1 3.4704 6.0315 1.3154 13 1 1.8990 6.5539 -0.4561 14 1 1.7912 4.4068 0.6661 15 6 4.1841 3.3032 1.3942 16 6 5.5740 2.9956 1.8888 17 6 6.4750 2.3223 1.0777 18 6 7.7442 2.0655 1.5726 19 6 8.0655 2.4814 2.8510 20 7 7.1812 3.1144 3.5966 21 6 5.9649 3.3756 3.1586 22 6 4.9918 4.1016 4.0514 23 9 5.6107 4.4006 5.2699 24 9 4.5857 5.2880 3.4312 25 9 3.8757 3.2901 4.2819 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 3.9536 0.8361 -0.9190 30 1 3.9585 0.7272 0.8577 31 1 4.2148 6.4834 -2.0094 32 1 3.4522 2.9124 2.1011 33 1 4.0615 4.3825 1.3035 34 1 6.1959 2.0094 0.0823 35 1 8.4728 1.5473 0.9668 36 1 9.0523 2.2856 3.2437 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599315640.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:50:38 Heat of formation + Delta-G solvation = -175.295732 kcal Electronic energy + Delta-G solvation = -28178.541824 eV Core-core repulsion = 23635.071870 eV Total energy + Delta-G solvation = -4543.469954 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.098 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -51.34578 -48.87144 -48.78433 -41.51058 -41.09438 -38.25568 -36.98281 -34.19796 -33.56179 -33.28783 -30.24095 -28.49956 -27.80694 -27.23486 -24.69134 -23.52883 -23.19751 -21.55337 -19.76181 -19.71167 -19.67057 -18.97097 -18.46225 -17.96478 -17.33911 -17.30338 -16.96200 -16.55930 -16.04492 -15.75954 -15.60723 -15.50298 -15.29490 -15.14086 -14.95938 -14.89755 -14.78747 -14.65927 -14.27808 -14.11715 -14.01984 -13.67811 -13.41261 -12.89709 -12.76258 -12.58854 -12.37750 -12.23889 -11.98545 -11.64160 -11.22949 -10.82982 -10.72960 -10.68132 -10.11336 -9.18507 -8.28686 -5.69812 -0.27316 0.24525 1.23131 1.35770 1.41450 1.46055 1.61383 1.94566 2.35973 2.41983 2.51412 2.84884 2.85381 3.17206 3.24873 3.55066 3.92678 3.98190 4.10014 4.18293 4.23037 4.32807 4.34009 4.38582 4.44473 4.50144 4.64473 4.69865 4.73170 5.20305 5.28222 5.56394 5.62025 5.78310 6.04710 6.65372 6.68812 7.06296 7.45654 7.79320 8.87665 Molecular weight = 318.10amu Principal moments of inertia in cm(-1) A = 0.011621 B = 0.006277 C = 0.005853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2408.848462 B = 4459.588859 C = 4782.892215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.370 6.370 3 C 0.418 3.582 4 O -0.533 6.533 5 C 0.150 3.850 6 N -0.575 5.575 7 C -0.249 4.249 8 H 0.084 0.916 9 C 0.003 3.997 10 N -0.932 5.932 11 Si 0.888 3.112 12 H -0.275 1.275 13 H -0.322 1.322 14 H -0.238 1.238 15 C 0.156 3.844 16 C -0.100 4.100 17 C -0.054 4.054 18 C -0.122 4.122 19 C 0.092 3.908 20 N -0.468 5.468 21 C 0.005 3.995 22 C 0.514 3.486 23 F -0.164 7.164 24 F -0.184 7.184 25 F -0.174 7.174 26 H 0.049 0.951 27 H 0.048 0.952 28 H 0.133 0.867 29 H 0.127 0.873 30 H 0.121 0.879 31 H 0.261 0.739 32 H 0.067 0.933 33 H 0.060 0.940 34 H 0.160 0.840 35 H 0.187 0.813 36 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.486 -13.191 8.914 16.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.286 6.286 3 C 0.259 3.741 4 O -0.421 6.421 5 C 0.022 3.978 6 N -0.295 5.295 7 C -0.378 4.378 8 H 0.101 0.899 9 C -0.195 4.195 10 N -0.575 5.575 11 Si 0.718 3.282 12 H -0.203 1.203 13 H -0.251 1.251 14 H -0.161 1.161 15 C 0.030 3.970 16 C -0.105 4.105 17 C -0.079 4.079 18 C -0.141 4.141 19 C -0.066 4.066 20 N -0.177 5.177 21 C -0.133 4.133 22 C 0.459 3.541 23 F -0.146 7.146 24 F -0.165 7.165 25 F -0.155 7.155 26 H 0.068 0.932 27 H 0.067 0.933 28 H 0.151 0.849 29 H 0.145 0.855 30 H 0.139 0.861 31 H 0.070 0.930 32 H 0.085 0.915 33 H 0.078 0.922 34 H 0.177 0.823 35 H 0.205 0.795 36 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 4.441 -12.458 9.714 16.410 hybrid contribution -1.906 1.357 -0.326 2.362 sum 2.535 -11.101 9.388 14.758 Atomic orbital electron populations 1.23369 0.76627 1.05061 1.01410 1.86555 1.23784 1.33960 1.84272 1.26737 0.95243 0.80932 0.71196 1.90695 1.67885 1.37709 1.45848 1.21265 0.83873 0.86448 1.06209 1.44052 1.74805 1.09467 1.01179 1.18770 1.36071 0.90878 0.92078 0.89877 1.25743 0.98250 0.97851 0.97670 1.69876 1.44159 1.05173 1.38299 0.86804 0.82506 0.78571 0.80273 1.20329 1.25134 1.16141 1.20316 0.91348 0.97912 0.87440 1.21504 0.99657 0.96576 0.92797 1.21881 0.92377 0.93447 1.00244 1.22865 0.96705 0.97802 0.96718 1.23467 0.99003 0.92947 0.91231 1.67154 1.00442 1.12235 1.37845 1.20482 0.94341 1.05099 0.93336 1.18191 0.79813 0.77022 0.79052 1.93182 1.82343 1.93431 1.45595 1.93256 1.91326 1.49212 1.82721 1.93180 1.54706 1.72870 1.94745 0.93189 0.93275 0.84856 0.85530 0.86122 0.92973 0.91451 0.92245 0.82267 0.79548 0.77695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.71 10.56 113.37 1.20 1.91 16 2 O -0.37 -11.05 10.57 -51.37 -0.54 -11.60 16 3 C 0.42 15.28 8.02 71.24 0.57 15.85 16 4 O -0.53 -24.60 14.46 21.95 0.32 -24.28 16 5 C 0.15 4.80 5.73 85.63 0.49 5.29 16 6 N -0.58 -23.83 0.48 -710.69 -0.34 -24.17 16 7 C -0.25 -12.53 9.51 84.03 0.80 -11.73 16 8 H 0.08 4.33 8.06 -2.91 -0.02 4.31 16 9 C 0.00 0.18 5.33 84.86 0.45 0.63 16 10 N -0.93 -56.19 13.97 21.65 0.30 -55.88 16 11 Si 0.89 47.32 24.62 68.60 1.69 49.01 16 12 H -0.28 -14.33 5.99 99.48 0.60 -13.74 16 13 H -0.32 -17.95 7.11 99.48 0.71 -17.24 16 14 H -0.24 -12.80 5.47 99.48 0.54 -12.25 16 15 C 0.16 6.47 3.40 85.63 0.29 6.76 16 16 C -0.10 -3.55 5.84 -19.77 -0.12 -3.66 16 17 C -0.05 -1.55 9.25 22.47 0.21 -1.34 16 18 C -0.12 -2.49 10.11 22.36 0.23 -2.26 16 19 C 0.09 1.99 11.18 84.69 0.95 2.94 16 20 N -0.47 -14.18 9.73 -183.89 -1.79 -15.97 16 21 C 0.00 0.16 6.26 42.54 0.27 0.43 16 22 C 0.51 18.53 2.88 71.24 0.21 18.73 16 23 F -0.16 -5.58 16.85 44.97 0.76 -4.82 16 24 F -0.18 -7.47 15.18 44.97 0.68 -6.79 16 25 F -0.17 -6.03 15.68 44.97 0.70 -5.33 16 26 H 0.05 1.27 8.13 -2.39 -0.02 1.25 16 27 H 0.05 1.28 8.13 -2.39 -0.02 1.26 16 28 H 0.13 2.09 8.14 -2.39 -0.02 2.07 16 29 H 0.13 3.48 8.04 -2.39 -0.02 3.46 16 30 H 0.12 3.02 8.08 -2.38 -0.02 3.00 16 31 H 0.26 15.38 8.31 -92.71 -0.77 14.61 16 32 H 0.07 2.73 6.66 -2.38 -0.02 2.72 16 33 H 0.06 2.88 2.07 -2.39 0.00 2.88 16 34 H 0.16 4.67 6.41 -2.91 -0.02 4.65 16 35 H 0.19 2.13 8.06 -2.91 -0.02 2.11 16 36 H 0.21 2.52 8.06 -2.91 -0.02 2.50 16 Total: -1.00 -72.88 316.31 8.19 -64.69 By element: Atomic # 1 Polarization: 0.72 SS G_CDS: 0.87 Total: 1.59 kcal Atomic # 6 Polarization: 28.00 SS G_CDS: 5.54 Total: 33.54 kcal Atomic # 7 Polarization: -94.19 SS G_CDS: -1.83 Total: -96.02 kcal Atomic # 8 Polarization: -35.65 SS G_CDS: -0.23 Total: -35.88 kcal Atomic # 9 Polarization: -19.08 SS G_CDS: 2.15 Total: -16.93 kcal Atomic # 14 Polarization: 47.32 SS G_CDS: 1.69 Total: 49.01 kcal Total: -72.88 8.19 -64.69 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599315640.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.605 kcal (2) G-P(sol) polarization free energy of solvation -72.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -183.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds