Wall clock time and date at job start Tue Mar 31 2020 12:10:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86801 * 119.99721 * 2 1 4 4 H 1.48502 * 109.46860 * 269.99641 * 3 2 1 5 5 H 1.48501 * 109.47484 * 29.99279 * 3 2 1 6 6 H 1.48492 * 109.47302 * 149.99668 * 3 2 1 7 7 C 1.37874 * 120.00297 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50708 * 119.99804 * 0.02562 * 7 2 1 10 10 N 1.46494 * 109.46765 * 179.97438 * 9 7 2 11 11 C 1.46498 * 120.00320 * 263.29110 * 10 9 7 12 12 C 1.52997 * 109.46929 * 94.68042 * 11 10 9 13 13 F 1.39897 * 109.47533 * 60.00259 * 12 11 10 14 14 F 1.39904 * 109.47334 * 180.02562 * 12 11 10 15 15 F 1.39895 * 109.47312 * 300.00323 * 12 11 10 16 16 C 1.34787 * 119.99796 * 83.29760 * 10 9 7 17 17 O 1.21593 * 119.99519 * 184.18620 * 16 10 9 18 18 C 1.47519 * 120.00125 * 4.18190 * 16 10 9 19 19 C 1.36596 * 125.77167 * 173.98397 * 18 16 10 20 20 N 1.34812 * 106.84211 * 179.90228 * 19 18 16 21 21 C 1.46493 * 126.59595 * 180.11131 * 20 19 18 22 22 C 1.53002 * 117.50027 * 343.88928 * 21 20 19 23 23 C 1.53003 * 60.00164 * 252.51272 * 22 21 20 24 24 N 1.40211 * 106.80808 * 0.35765 * 20 19 18 25 25 N 1.28762 * 108.37179 * 359.77260 * 24 20 19 26 26 H 0.96998 * 120.00538 * 0.02562 * 1 2 3 27 27 H 1.08996 * 109.46730 * 59.99684 * 9 7 2 28 28 H 1.09004 * 109.46863 * 299.99750 * 9 7 2 29 29 H 1.08997 * 109.47272 * 214.68174 * 11 10 9 30 30 H 1.09000 * 109.46891 * 334.68156 * 11 10 9 31 31 H 1.08002 * 126.57716 * 0.04011 * 19 18 16 32 32 H 1.08994 * 115.55420 * 129.60307 * 21 20 19 33 33 H 1.09007 * 117.49427 * 0.02562 * 22 21 20 34 34 H 1.08996 * 117.50210 * 145.02238 * 22 21 20 35 35 H 1.08996 * 117.49642 * 252.50967 * 23 22 21 36 36 H 1.09000 * 117.51697 * 107.47905 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6528 0.6999 6 1 3.5466 1.4404 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 2.2031 -3.6126 0.0005 11 6 2.5666 -4.2657 -1.2594 12 6 3.8497 -3.6381 -1.8075 13 9 4.8838 -3.8056 -0.8803 14 9 4.1966 -4.2613 -3.0111 15 9 3.6420 -2.2731 -2.0327 16 6 2.7446 -4.0362 1.1599 17 8 3.5914 -4.9088 1.1522 18 6 2.3100 -3.4412 2.4379 19 6 2.6905 -3.8565 3.6823 20 7 2.0736 -3.0498 4.5689 21 6 2.1809 -3.1124 6.0285 22 6 2.7540 -4.3923 6.6405 23 6 1.2595 -4.0881 6.7634 24 7 1.3050 -2.1430 3.8254 25 7 1.4681 -2.4025 2.5748 26 1 -0.4851 0.8400 -0.0004 27 1 0.6248 -2.5570 -0.8896 28 1 0.6241 -2.5567 0.8904 29 1 2.7285 -5.3292 -1.0840 30 1 1.7609 -4.1351 -1.9819 31 1 3.3593 -4.6729 3.9118 32 1 2.4131 -2.1697 6.5238 33 1 3.0515 -5.1875 5.9570 34 1 3.3636 -4.2917 7.5385 35 1 0.8860 -3.7874 7.7422 36 1 0.5733 -4.6831 6.1608 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599612754.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:10:25 Heat of formation + Delta-G solvation = -39.802229 kcal Electronic energy + Delta-G solvation = -27791.841673 eV Core-core repulsion = 23286.539909 eV Total energy + Delta-G solvation = -4505.301763 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.104 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -49.36409 -46.95926 -46.72292 -41.75810 -38.96200 -37.59291 -35.27302 -32.50974 -32.19880 -30.71975 -29.05877 -26.80836 -24.56864 -23.57136 -22.92792 -22.84479 -21.81722 -20.81166 -19.37455 -17.91217 -17.85140 -17.49313 -16.86043 -16.22879 -16.04568 -15.84645 -15.39635 -14.87530 -14.33383 -14.28023 -13.86233 -13.71723 -13.63324 -13.37947 -13.24874 -12.98952 -12.92027 -12.90398 -12.21382 -12.10371 -12.01871 -11.86545 -11.68067 -11.55795 -11.40231 -11.00843 -10.83267 -10.71289 -10.14425 -9.79259 -9.78915 -9.58852 -9.46805 -8.80050 -8.28108 -7.94785 -5.93379 -3.93127 1.49981 2.23014 2.34595 3.17345 3.32148 3.38939 3.44499 3.48539 3.57435 3.90559 4.14218 4.32483 4.49264 4.50376 4.56190 4.65378 4.72321 4.92047 5.07942 5.15154 5.28341 5.35901 5.44639 5.47811 5.58638 5.61413 5.67406 5.77251 6.21119 6.52378 6.73265 7.41029 7.57850 7.95462 8.08578 8.28171 8.51132 8.76909 9.06900 9.69193 11.15804 Molecular weight = 318.10amu Principal moments of inertia in cm(-1) A = 0.011431 B = 0.005929 C = 0.004309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2448.974770 B = 4721.523241 C = 6496.003080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.074 3.926 3 Si 0.887 3.113 4 H -0.282 1.282 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.508 4.508 8 H 0.056 0.944 9 C 0.227 3.773 10 N -0.584 5.584 11 C 0.085 3.915 12 C 0.429 3.571 13 F -0.179 7.179 14 F -0.197 7.197 15 F -0.161 7.161 16 C 0.607 3.393 17 O -0.556 6.556 18 C -0.089 4.089 19 C 0.077 3.923 20 N -0.349 5.349 21 C 0.074 3.926 22 C -0.171 4.171 23 C -0.170 4.170 24 N -0.074 5.074 25 N -0.131 5.131 26 H 0.260 0.740 27 H 0.034 0.966 28 H 0.078 0.922 29 H 0.111 0.889 30 H 0.120 0.880 31 H 0.194 0.806 32 H 0.147 0.853 33 H 0.107 0.893 34 H 0.117 0.883 35 H 0.114 0.886 36 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.309 -10.581 9.163 14.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.128 4.128 3 Si 0.715 3.285 4 H -0.208 1.208 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.547 4.547 8 H 0.074 0.926 9 C 0.108 3.892 10 N -0.313 5.313 11 C -0.042 4.042 12 C 0.373 3.627 13 F -0.160 7.160 14 F -0.179 7.179 15 F -0.142 7.142 16 C 0.394 3.606 17 O -0.435 6.435 18 C -0.227 4.227 19 C -0.079 4.079 20 N -0.133 5.133 21 C -0.030 4.030 22 C -0.209 4.209 23 C -0.208 4.208 24 N -0.053 5.053 25 N -0.004 5.004 26 H 0.070 0.930 27 H 0.052 0.948 28 H 0.095 0.905 29 H 0.129 0.871 30 H 0.138 0.862 31 H 0.211 0.789 32 H 0.164 0.836 33 H 0.125 0.875 34 H 0.135 0.865 35 H 0.132 0.868 36 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 2.622 -9.673 9.251 13.639 hybrid contribution 1.439 0.516 -0.101 1.532 sum 4.060 -9.157 9.149 13.566 Atomic orbital electron populations 1.69902 1.05739 1.26610 1.50488 1.24702 0.94609 0.98469 0.95042 0.86676 0.79918 0.83952 0.77923 1.20793 1.21308 1.20234 1.21200 0.93011 0.90043 1.50485 0.92588 1.20123 0.87259 0.81722 1.00093 1.48109 1.44941 1.35271 1.03016 1.22434 0.93668 0.98749 0.89312 1.21383 0.87786 0.78247 0.75319 1.93198 1.61788 1.95279 1.65748 1.93120 1.93579 1.82898 1.48309 1.93316 1.94782 1.31741 1.94388 1.16837 0.80386 0.80943 0.82386 1.90738 1.32427 1.33030 1.87296 1.21198 1.06677 1.00872 0.93990 1.23039 0.98388 0.97429 0.89019 1.49952 1.33164 1.23859 1.06303 1.21897 1.07765 0.97550 0.75759 1.23477 0.97233 0.96953 1.03230 1.23476 0.93510 1.01448 1.02378 1.82251 1.14377 1.11716 0.96931 1.75382 1.09291 1.08270 1.07450 0.92998 0.94840 0.90464 0.87082 0.86179 0.78883 0.83567 0.87452 0.86481 0.86783 0.87726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.41 13.29 55.43 0.74 -24.68 16 2 C 0.07 2.06 5.46 -17.82 -0.10 1.96 16 3 Si 0.89 22.28 29.54 -169.99 -5.02 17.26 16 4 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 5 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 6 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 7 C -0.51 -13.70 7.07 -34.44 -0.24 -13.94 16 8 H 0.06 1.59 7.00 -52.49 -0.37 1.22 16 9 C 0.23 5.48 4.75 -5.19 -0.02 5.45 16 10 N -0.58 -12.25 2.40 -176.30 -0.42 -12.68 16 11 C 0.09 1.49 5.47 -4.04 -0.02 1.46 16 12 C 0.43 8.13 3.29 37.16 0.12 8.25 16 13 F -0.18 -3.71 15.54 2.25 0.04 -3.68 16 14 F -0.20 -3.34 17.32 2.25 0.04 -3.30 16 15 F -0.16 -3.51 14.96 2.25 0.03 -3.48 16 16 C 0.61 12.73 7.21 -12.47 -0.09 12.64 16 17 O -0.56 -11.72 15.29 5.28 0.08 -11.64 16 18 C -0.09 -1.80 6.68 -83.55 -0.56 -2.35 16 19 C 0.08 1.22 10.63 -16.84 -0.18 1.04 16 20 N -0.35 -5.32 3.96 -54.57 -0.22 -5.54 16 21 C 0.07 0.74 7.16 -67.93 -0.49 0.25 16 22 C -0.17 -1.13 10.00 -26.73 -0.27 -1.40 16 23 C -0.17 -1.29 10.46 -26.73 -0.28 -1.57 16 24 N -0.07 -1.49 13.78 60.35 0.83 -0.65 16 25 N -0.13 -2.94 8.08 32.85 0.27 -2.68 16 26 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 27 H 0.03 0.83 7.78 -51.93 -0.40 0.42 16 28 H 0.08 1.99 5.29 -51.93 -0.27 1.71 16 29 H 0.11 1.69 7.63 -51.93 -0.40 1.30 16 30 H 0.12 1.80 7.79 -51.93 -0.40 1.40 16 31 H 0.19 2.32 7.31 -52.49 -0.38 1.93 16 32 H 0.15 1.27 8.14 -51.93 -0.42 0.85 16 33 H 0.11 0.71 7.07 -51.93 -0.37 0.34 16 34 H 0.12 0.52 8.14 -51.93 -0.42 0.09 16 35 H 0.11 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.10 0.92 8.14 -51.93 -0.42 0.49 16 LS Contribution 324.40 15.07 4.89 4.89 Total: -1.00 -33.27 324.40 -4.30 -37.56 By element: Atomic # 1 Polarization: 0.24 SS G_CDS: -3.42 Total: -3.19 kcal Atomic # 6 Polarization: 13.92 SS G_CDS: -2.13 Total: 11.80 kcal Atomic # 7 Polarization: -47.42 SS G_CDS: 1.19 Total: -46.22 kcal Atomic # 8 Polarization: -11.72 SS G_CDS: 0.08 Total: -11.64 kcal Atomic # 9 Polarization: -10.57 SS G_CDS: 0.11 Total: -10.46 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -33.27 -4.30 -37.56 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599612754.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.237 kcal (2) G-P(sol) polarization free energy of solvation -33.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds