Wall clock time and date at job start Tue Mar 31 2020 12:10:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86801 * 119.99721 * 2 1 4 4 H 1.48502 * 109.46860 * 269.99641 * 3 2 1 5 5 H 1.48501 * 109.47484 * 29.99279 * 3 2 1 6 6 H 1.48492 * 109.47302 * 149.99668 * 3 2 1 7 7 C 1.37874 * 120.00297 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50708 * 119.99804 * 0.02562 * 7 2 1 10 10 N 1.46494 * 109.46765 * 179.97438 * 9 7 2 11 11 C 1.46498 * 120.00320 * 263.29110 * 10 9 7 12 12 C 1.52997 * 109.46929 * 94.68042 * 11 10 9 13 13 F 1.39897 * 109.47533 * 60.00259 * 12 11 10 14 14 F 1.39904 * 109.47334 * 180.02562 * 12 11 10 15 15 F 1.39895 * 109.47312 * 300.00323 * 12 11 10 16 16 C 1.34787 * 119.99796 * 83.29760 * 10 9 7 17 17 O 1.21593 * 119.99519 * 184.18620 * 16 10 9 18 18 C 1.47519 * 120.00125 * 4.18190 * 16 10 9 19 19 C 1.36596 * 125.77167 * 173.98397 * 18 16 10 20 20 N 1.34812 * 106.84211 * 179.90228 * 19 18 16 21 21 C 1.46493 * 126.59595 * 180.11131 * 20 19 18 22 22 C 1.53002 * 117.50027 * 343.88928 * 21 20 19 23 23 C 1.53003 * 60.00164 * 252.51272 * 22 21 20 24 24 N 1.40211 * 106.80808 * 0.35765 * 20 19 18 25 25 N 1.28762 * 108.37179 * 359.77260 * 24 20 19 26 26 H 0.96998 * 120.00538 * 0.02562 * 1 2 3 27 27 H 1.08996 * 109.46730 * 59.99684 * 9 7 2 28 28 H 1.09004 * 109.46863 * 299.99750 * 9 7 2 29 29 H 1.08997 * 109.47272 * 214.68174 * 11 10 9 30 30 H 1.09000 * 109.46891 * 334.68156 * 11 10 9 31 31 H 1.08002 * 126.57716 * 0.04011 * 19 18 16 32 32 H 1.08994 * 115.55420 * 129.60307 * 21 20 19 33 33 H 1.09007 * 117.49427 * 0.02562 * 22 21 20 34 34 H 1.08996 * 117.50210 * 145.02238 * 22 21 20 35 35 H 1.08996 * 117.49642 * 252.50967 * 23 22 21 36 36 H 1.09000 * 117.51697 * 107.47905 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6528 0.6999 6 1 3.5466 1.4404 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 2.2031 -3.6126 0.0005 11 6 2.5666 -4.2657 -1.2594 12 6 3.8497 -3.6381 -1.8075 13 9 4.8838 -3.8056 -0.8803 14 9 4.1966 -4.2613 -3.0111 15 9 3.6420 -2.2731 -2.0327 16 6 2.7446 -4.0362 1.1599 17 8 3.5914 -4.9088 1.1522 18 6 2.3100 -3.4412 2.4379 19 6 2.6905 -3.8565 3.6823 20 7 2.0736 -3.0498 4.5689 21 6 2.1809 -3.1124 6.0285 22 6 2.7540 -4.3923 6.6405 23 6 1.2595 -4.0881 6.7634 24 7 1.3050 -2.1430 3.8254 25 7 1.4681 -2.4025 2.5748 26 1 -0.4851 0.8400 -0.0004 27 1 0.6248 -2.5570 -0.8896 28 1 0.6241 -2.5567 0.8904 29 1 2.7285 -5.3292 -1.0840 30 1 1.7609 -4.1351 -1.9819 31 1 3.3593 -4.6729 3.9118 32 1 2.4131 -2.1697 6.5238 33 1 3.0515 -5.1875 5.9570 34 1 3.3636 -4.2917 7.5385 35 1 0.8860 -3.7874 7.7422 36 1 0.5733 -4.6831 6.1608 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599612754.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:10:24 Heat of formation + Delta-G solvation = -61.389172 kcal Electronic energy + Delta-G solvation = -27792.777753 eV Core-core repulsion = 23286.539909 eV Total energy + Delta-G solvation = -4506.237844 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.104 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -50.90499 -48.45795 -48.34953 -43.11475 -40.51489 -38.41654 -36.94436 -34.51149 -33.44751 -32.17458 -30.61402 -28.68200 -25.79392 -25.12605 -24.59422 -23.75355 -23.08688 -21.91970 -20.79235 -19.44636 -19.38268 -18.93064 -18.34688 -18.13120 -17.38893 -16.99331 -16.95916 -16.29337 -15.98784 -15.58858 -15.35806 -15.26043 -15.10336 -14.84168 -14.74875 -14.53897 -14.51972 -14.17906 -13.96318 -13.71424 -13.35554 -13.22978 -13.10720 -12.79293 -12.68815 -12.50902 -12.37992 -12.13755 -11.79472 -11.62271 -11.30962 -11.10838 -10.88309 -10.39248 -10.17796 -9.68434 -8.05251 -6.08011 0.23046 0.80036 1.15883 1.37503 1.38974 1.46755 1.81138 2.01774 2.34659 2.48867 2.54472 3.02759 3.17288 3.30639 3.31894 3.44405 3.52566 3.61621 3.76362 3.92158 4.02279 4.19164 4.33471 4.40613 4.60129 4.68321 4.81085 4.87243 4.95967 5.10455 5.48011 5.63767 5.75888 5.86374 6.23110 6.32185 6.87590 7.04588 7.27509 7.55717 9.03236 Molecular weight = 318.10amu Principal moments of inertia in cm(-1) A = 0.011431 B = 0.005929 C = 0.004309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2448.974770 B = 4721.523241 C = 6496.003080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.033 3.967 3 Si 0.930 3.070 4 H -0.275 1.275 5 H -0.283 1.283 6 H -0.285 1.285 7 C -0.499 4.499 8 H 0.037 0.963 9 C 0.243 3.757 10 N -0.590 5.590 11 C 0.083 3.917 12 C 0.428 3.572 13 F -0.191 7.191 14 F -0.183 7.183 15 F -0.182 7.182 16 C 0.605 3.395 17 O -0.560 6.560 18 C -0.127 4.127 19 C 0.103 3.897 20 N -0.329 5.329 21 C 0.029 3.971 22 C -0.140 4.140 23 C -0.162 4.162 24 N -0.111 5.111 25 N -0.176 5.176 26 H 0.260 0.740 27 H 0.026 0.974 28 H 0.066 0.934 29 H 0.138 0.862 30 H 0.144 0.856 31 H 0.235 0.765 32 H 0.158 0.842 33 H 0.113 0.887 34 H 0.149 0.851 35 H 0.138 0.862 36 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.288 -12.054 10.791 16.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.166 4.166 3 Si 0.758 3.242 4 H -0.201 1.201 5 H -0.209 1.209 6 H -0.211 1.211 7 C -0.538 4.538 8 H 0.055 0.945 9 C 0.123 3.877 10 N -0.320 5.320 11 C -0.043 4.043 12 C 0.373 3.627 13 F -0.172 7.172 14 F -0.165 7.165 15 F -0.163 7.163 16 C 0.394 3.606 17 O -0.440 6.440 18 C -0.267 4.267 19 C -0.055 4.055 20 N -0.112 5.112 21 C -0.073 4.073 22 C -0.178 4.178 23 C -0.200 4.200 24 N -0.090 5.090 25 N -0.048 5.048 26 H 0.069 0.931 27 H 0.044 0.956 28 H 0.083 0.917 29 H 0.155 0.845 30 H 0.161 0.839 31 H 0.251 0.749 32 H 0.175 0.825 33 H 0.131 0.869 34 H 0.166 0.834 35 H 0.156 0.844 36 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 3.598 -11.137 10.893 15.989 hybrid contribution 1.209 0.856 -0.463 1.552 sum 4.806 -10.281 10.431 15.414 Atomic orbital electron populations 1.69972 1.06520 1.26992 1.51898 1.25229 0.95233 1.00759 0.95416 0.85996 0.78583 0.81605 0.78022 1.20090 1.20855 1.21057 1.21245 0.92019 0.91404 1.49155 0.94504 1.19693 0.87298 0.81739 0.99009 1.47993 1.44685 1.34847 1.04452 1.22745 0.93539 0.99566 0.88460 1.21593 0.88095 0.77439 0.75617 1.93170 1.62475 1.95252 1.66324 1.93142 1.93516 1.82420 1.47406 1.93271 1.94904 1.33605 1.94538 1.17015 0.80115 0.80822 0.82697 1.90714 1.32505 1.33267 1.87476 1.21446 1.08241 1.01776 0.95252 1.23554 0.97179 0.97251 0.87553 1.50237 1.30830 1.21894 1.08207 1.22552 1.11790 1.00029 0.72908 1.23699 0.96643 0.94002 1.03454 1.23578 0.94205 0.99642 1.02561 1.82099 1.16262 1.13737 0.96872 1.75323 1.10848 1.09823 1.08810 0.93071 0.95577 0.91692 0.84460 0.83851 0.74896 0.82518 0.86916 0.83355 0.84384 0.89067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.21 13.29 21.45 0.28 -52.93 16 2 C 0.03 1.87 5.46 84.65 0.46 2.34 16 3 Si 0.93 46.28 29.54 68.60 2.03 48.31 16 4 H -0.28 -13.28 7.11 99.48 0.71 -12.58 16 5 H -0.28 -13.77 7.11 99.48 0.71 -13.06 16 6 H -0.28 -14.39 7.11 99.48 0.71 -13.69 16 7 C -0.50 -27.42 7.07 25.60 0.18 -27.24 16 8 H 0.04 2.14 7.00 -2.91 -0.02 2.12 16 9 C 0.24 11.95 4.75 85.64 0.41 12.36 16 10 N -0.59 -24.73 2.40 -829.94 -1.99 -26.72 16 11 C 0.08 2.78 5.47 86.38 0.47 3.25 16 12 C 0.43 15.92 3.29 71.98 0.24 16.15 16 13 F -0.19 -7.81 15.54 44.97 0.70 -7.11 16 14 F -0.18 -5.94 17.32 44.97 0.78 -5.16 16 15 F -0.18 -7.96 14.96 44.97 0.67 -7.28 16 16 C 0.61 25.14 7.21 86.69 0.62 25.77 16 17 O -0.56 -22.86 15.29 -4.01 -0.06 -22.92 16 18 C -0.13 -5.13 6.68 40.81 0.27 -4.86 16 19 C 0.10 3.07 10.63 83.85 0.89 3.96 16 20 N -0.33 -9.65 3.96 -326.55 -1.29 -10.94 16 21 C 0.03 0.51 7.16 45.00 0.32 0.83 16 22 C -0.14 -1.27 10.00 30.60 0.31 -0.96 16 23 C -0.16 -1.97 10.46 30.60 0.32 -1.65 16 24 N -0.11 -4.54 13.78 37.02 0.51 -4.03 16 25 N -0.18 -8.11 8.08 -49.99 -0.40 -8.52 16 26 H 0.26 14.58 8.31 -92.71 -0.77 13.81 16 27 H 0.03 1.31 7.78 -2.39 -0.02 1.30 16 28 H 0.07 3.45 5.29 -2.39 -0.01 3.44 16 29 H 0.14 3.90 7.63 -2.39 -0.02 3.88 16 30 H 0.14 4.10 7.79 -2.39 -0.02 4.08 16 31 H 0.23 4.78 7.31 -2.91 -0.02 4.76 16 32 H 0.16 2.41 8.14 -2.39 -0.02 2.39 16 33 H 0.11 0.97 7.07 -2.38 -0.02 0.95 16 34 H 0.15 0.50 8.14 -2.39 -0.02 0.48 16 35 H 0.14 1.02 8.14 -2.39 -0.02 1.00 16 36 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 Total: -1.00 -73.96 324.40 6.87 -67.10 By element: Atomic # 1 Polarization: -0.88 SS G_CDS: 1.15 Total: 0.27 kcal Atomic # 6 Polarization: 25.44 SS G_CDS: 4.50 Total: 29.94 kcal Atomic # 7 Polarization: -100.25 SS G_CDS: -2.89 Total: -103.14 kcal Atomic # 8 Polarization: -22.86 SS G_CDS: -0.06 Total: -22.92 kcal Atomic # 9 Polarization: -21.70 SS G_CDS: 2.15 Total: -19.55 kcal Atomic # 14 Polarization: 46.28 SS G_CDS: 2.03 Total: 48.31 kcal Total: -73.96 6.87 -67.10 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599612754.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.709 kcal (2) G-P(sol) polarization free energy of solvation -73.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds