Wall clock time and date at job start Tue Mar 31 2020 12:06:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86805 * 119.99751 * 2 1 4 4 H 1.48499 * 109.46912 * 269.99776 * 3 2 1 5 5 H 1.48496 * 109.47185 * 29.99741 * 3 2 1 6 6 H 1.48504 * 109.47204 * 149.99767 * 3 2 1 7 7 C 1.38814 * 120.00559 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00399 * 176.01798 * 7 2 1 9 9 N 1.36940 * 119.99560 * 356.01394 * 7 2 1 10 10 C 1.46962 * 120.59130 * 215.68334 * 9 7 2 11 11 C 1.53368 * 108.63678 * 235.20346 * 10 9 7 12 12 N 1.46966 * 108.63788 * 310.58172 * 11 10 9 13 13 C 1.34773 * 120.59369 * 235.20502 * 12 11 10 14 14 O 1.21571 * 120.00134 * 185.43710 * 13 12 11 15 15 C 1.47706 * 120.00183 * 5.43132 * 13 12 11 16 16 N 1.31808 * 126.52035 * 353.99079 * 15 13 12 17 17 N 1.28462 * 110.07830 * 179.78916 * 16 15 13 18 18 H 0.97000 * 124.88869 * 180.23782 * 17 16 15 19 19 C 1.35040 * 110.23015 * 0.39493 * 17 16 15 20 20 C 1.35365 * 107.22289 * 359.61090 * 19 17 16 21 21 C 1.50701 * 127.24562 * 180.24549 * 20 19 17 22 22 F 1.39902 * 109.47292 * 359.97438 * 21 20 19 23 23 F 1.39903 * 109.47279 * 119.97471 * 21 20 19 24 24 F 1.39895 * 109.47511 * 239.97708 * 21 20 19 25 25 C 1.46964 * 118.80976 * 55.47035 * 12 11 10 26 26 C 1.46965 * 120.59455 * 35.66295 * 9 7 2 27 27 H 0.96994 * 120.00545 * 0.02562 * 1 2 3 28 28 H 1.09007 * 109.61206 * 115.46370 * 10 9 7 29 29 H 1.08998 * 109.75575 * 355.03735 * 10 9 7 30 30 H 1.08997 * 109.61459 * 190.83310 * 11 10 9 31 31 H 1.08999 * 109.60709 * 70.31858 * 11 10 9 32 32 H 1.07994 * 126.38785 * 179.87589 * 19 17 16 33 33 H 1.09001 * 109.61032 * 64.27335 * 25 12 11 34 34 H 1.09006 * 109.60872 * 184.78356 * 25 12 11 35 35 H 1.08999 * 109.60685 * 244.53668 * 26 9 7 36 36 H 1.08997 * 109.60957 * 5.04792 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4403 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0884 -1.2032 -0.0644 9 7 1.3282 -2.3866 0.0835 10 6 1.8888 -3.5219 0.8295 11 6 1.9526 -4.7377 -0.1033 12 7 0.6466 -4.8962 -0.7583 13 6 -0.0248 -6.0619 -0.6766 14 8 -1.0555 -6.2150 -1.3028 15 6 0.4917 -7.1537 0.1737 16 7 1.6427 -7.1703 0.8158 17 7 1.7706 -8.2724 1.4632 18 1 2.5352 -8.5082 2.0116 19 6 0.6890 -9.0570 1.2678 20 6 -0.1547 -8.3809 0.4534 21 6 -1.4997 -8.8387 -0.0492 22 9 -1.7778 -10.1129 0.4571 23 9 -2.4862 -7.9424 0.3759 24 9 -1.4837 -8.8859 -1.4473 25 6 0.0885 -3.7626 -1.5089 26 6 0.0221 -2.5450 -0.5714 27 1 -0.4851 0.8399 -0.0004 28 1 1.2509 -3.7493 1.6837 29 1 2.8917 -3.2748 1.1775 30 1 2.1820 -5.6318 0.4763 31 1 2.7233 -4.5799 -0.8577 32 1 0.5256 -10.0388 1.6869 33 1 0.7296 -3.5370 -2.3611 34 1 -0.9135 -4.0126 -1.8578 35 1 -0.7487 -2.7028 0.1830 36 1 -0.2074 -1.6509 -1.1510 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601206108.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:06:41 Heat of formation + Delta-G solvation = -57.860201 kcal Electronic energy + Delta-G solvation = -27644.044505 eV Core-core repulsion = 23137.959689 eV Total energy + Delta-G solvation = -4506.084816 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.104 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -49.93599 -47.52842 -47.31551 -43.16029 -39.31138 -36.73334 -33.95650 -32.76855 -31.85681 -31.12643 -29.92332 -27.10421 -26.13006 -24.58633 -23.19529 -22.64346 -21.54904 -20.43688 -19.56684 -18.39080 -18.27185 -18.09255 -17.18875 -16.87781 -16.19979 -16.04967 -15.32626 -14.82092 -14.50685 -14.36467 -14.25612 -14.05687 -13.82785 -13.55474 -13.53981 -13.52088 -13.38886 -13.28105 -13.14533 -12.49392 -12.34965 -11.97348 -11.23443 -10.95718 -10.76772 -10.59957 -10.29346 -10.11973 -10.02562 -9.92648 -9.89231 -9.82727 -9.49150 -8.51152 -8.20644 -6.56496 -5.81629 -3.37773 1.30376 1.39161 2.26507 2.84407 3.32315 3.35672 3.41571 3.43045 3.49288 3.74328 4.02243 4.31895 4.45449 4.58167 4.58811 4.79181 5.17079 5.35180 5.37925 5.60253 5.90679 5.92179 6.13337 6.20760 6.40461 6.41822 6.52969 6.65685 6.80325 6.98019 7.34211 7.43586 7.73016 7.73752 7.90469 8.46309 8.48603 9.18422 9.76554 10.36964 11.22969 Molecular weight = 318.10amu Principal moments of inertia in cm(-1) A = 0.027164 B = 0.003573 C = 0.003316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.538751 B = 7835.119281 C = 8442.661299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.011 3.989 3 Si 0.905 3.095 4 H -0.286 1.286 5 H -0.289 1.289 6 H -0.279 1.279 7 C -0.258 4.258 8 H 0.065 0.935 9 N -0.594 5.594 10 C 0.135 3.865 11 C 0.056 3.944 12 N -0.575 5.575 13 C 0.580 3.420 14 O -0.532 6.532 15 C 0.060 3.940 16 N -0.245 5.245 17 N -0.381 5.381 18 H 0.453 0.547 19 C 0.059 3.941 20 C -0.262 4.262 21 C 0.552 3.448 22 F -0.186 7.186 23 F -0.166 7.166 24 F -0.165 7.165 25 C 0.085 3.915 26 C 0.154 3.846 27 H 0.256 0.744 28 H 0.020 0.980 29 H 0.064 0.936 30 H 0.124 0.876 31 H 0.062 0.938 32 H 0.199 0.801 33 H 0.062 0.938 34 H 0.082 0.918 35 H 0.021 0.979 36 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.068 -20.468 3.604 21.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.188 4.188 3 Si 0.734 3.266 4 H -0.213 1.213 5 H -0.215 1.215 6 H -0.204 1.204 7 C -0.387 4.387 8 H 0.083 0.917 9 N -0.317 5.317 10 C 0.008 3.992 11 C -0.070 4.070 12 N -0.306 5.306 13 C 0.364 3.636 14 O -0.408 6.408 15 C -0.103 4.103 16 N -0.078 5.078 17 N -0.091 5.091 18 H 0.299 0.701 19 C -0.089 4.089 20 C -0.274 4.274 21 C 0.496 3.504 22 F -0.168 7.168 23 F -0.147 7.147 24 F -0.146 7.146 25 C -0.038 4.038 26 C 0.028 3.972 27 H 0.067 0.933 28 H 0.038 0.962 29 H 0.083 0.917 30 H 0.141 0.859 31 H 0.080 0.920 32 H 0.216 0.784 33 H 0.081 0.919 34 H 0.100 0.900 35 H 0.039 0.961 36 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 3.331 -19.706 3.446 20.280 hybrid contribution 0.077 0.213 0.235 0.327 sum 3.408 -19.493 3.682 20.128 Atomic orbital electron populations 1.69835 1.05410 1.25674 1.53793 1.25347 0.95538 0.98377 0.99559 0.86264 0.79112 0.83476 0.77721 1.21330 1.21519 1.20397 1.19160 0.90749 0.83037 1.45778 0.91729 1.43961 1.20215 1.10024 1.57484 1.21259 0.97932 0.87600 0.92422 1.23313 0.83204 1.02822 0.97616 1.47943 1.20587 1.11454 1.50567 1.16979 0.84189 0.81167 0.81269 1.90818 1.23930 1.80580 1.45459 1.22105 0.91750 0.95611 1.00836 1.73568 1.19342 1.05089 1.09797 1.43659 1.17564 1.11540 1.36332 0.70101 1.22669 0.87836 0.98905 0.99473 1.20276 0.98495 0.98423 1.10224 1.16934 0.83640 0.74075 0.75759 1.93147 1.94729 1.41465 1.87414 1.93247 1.64011 1.67805 1.89644 1.93241 1.96680 1.95984 1.28678 1.22807 0.98702 0.86749 0.95581 1.21509 0.86863 0.94888 0.93935 0.93302 0.96184 0.91731 0.85907 0.92013 0.78411 0.91919 0.89997 0.96070 0.86779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.72 10.61 55.49 0.59 -25.13 16 2 C 0.01 0.29 5.32 -17.43 -0.09 0.20 16 3 Si 0.90 21.22 29.56 -169.99 -5.02 16.20 16 4 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 6 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 7 C -0.26 -6.91 9.55 -15.06 -0.14 -7.05 16 8 H 0.07 1.69 7.83 -52.49 -0.41 1.28 16 9 N -0.59 -14.79 2.97 -171.77 -0.51 -15.30 16 10 C 0.14 2.80 6.67 -3.60 -0.02 2.77 16 11 C 0.06 0.99 6.49 -3.60 -0.02 0.97 16 12 N -0.57 -11.22 2.94 -173.38 -0.51 -11.73 16 13 C 0.58 11.08 7.69 -12.39 -0.10 10.99 16 14 O -0.53 -11.32 13.95 5.30 0.07 -11.25 16 15 C 0.06 0.92 6.90 -82.77 -0.57 0.35 16 16 N -0.24 -3.04 8.56 33.42 0.29 -2.75 16 17 N -0.38 -2.86 6.83 30.47 0.21 -2.65 16 18 H 0.45 1.31 8.96 -190.44 -1.71 -0.39 16 19 C 0.06 0.46 11.49 -17.16 -0.20 0.26 16 20 C -0.26 -3.36 5.66 -104.40 -0.59 -3.95 16 21 C 0.55 7.72 2.85 36.01 0.10 7.82 16 22 F -0.19 -2.11 16.87 2.25 0.04 -2.08 16 23 F -0.17 -2.70 16.62 2.25 0.04 -2.67 16 24 F -0.16 -2.61 16.24 2.25 0.04 -2.57 16 25 C 0.08 1.78 6.61 -3.37 -0.02 1.75 16 26 C 0.15 3.77 5.48 -3.37 -0.02 3.75 16 27 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 28 H 0.02 0.43 8.14 -51.92 -0.42 0.01 16 29 H 0.06 1.25 7.94 -51.93 -0.41 0.84 16 30 H 0.12 1.90 3.67 -120.40 -0.44 1.46 16 31 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 32 H 0.20 0.65 8.02 -52.49 -0.42 0.23 16 33 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 34 H 0.08 1.70 7.02 -51.93 -0.36 1.34 16 35 H 0.02 0.56 8.14 -51.93 -0.42 0.13 16 36 H 0.11 3.06 5.85 -51.93 -0.30 2.76 16 LS Contribution 311.36 15.07 4.69 4.69 Total: -1.00 -33.57 311.36 -6.65 -40.22 By element: Atomic # 1 Polarization: 2.05 SS G_CDS: -4.89 Total: -2.84 kcal Atomic # 6 Polarization: 19.53 SS G_CDS: -1.68 Total: 17.86 kcal Atomic # 7 Polarization: -57.63 SS G_CDS: 0.06 Total: -57.56 kcal Atomic # 8 Polarization: -11.32 SS G_CDS: 0.07 Total: -11.25 kcal Atomic # 9 Polarization: -7.43 SS G_CDS: 0.11 Total: -7.31 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -33.57 -6.65 -40.22 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601206108.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.639 kcal (2) G-P(sol) polarization free energy of solvation -33.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds