Wall clock time and date at job start Tue Mar 31 2020 12:06:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86805 * 119.99751 * 2 1 4 4 H 1.48499 * 109.46912 * 269.99776 * 3 2 1 5 5 H 1.48496 * 109.47185 * 29.99741 * 3 2 1 6 6 H 1.48504 * 109.47204 * 149.99767 * 3 2 1 7 7 C 1.38814 * 120.00559 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00399 * 176.01798 * 7 2 1 9 9 N 1.36940 * 119.99560 * 356.01394 * 7 2 1 10 10 C 1.46962 * 120.59130 * 215.68334 * 9 7 2 11 11 C 1.53368 * 108.63678 * 235.20346 * 10 9 7 12 12 N 1.46966 * 108.63788 * 310.58172 * 11 10 9 13 13 C 1.34773 * 120.59369 * 235.20502 * 12 11 10 14 14 O 1.21571 * 120.00134 * 185.43710 * 13 12 11 15 15 C 1.47706 * 120.00183 * 5.43132 * 13 12 11 16 16 N 1.31808 * 126.52035 * 353.99079 * 15 13 12 17 17 N 1.28462 * 110.07830 * 179.78916 * 16 15 13 18 18 H 0.97000 * 124.88869 * 180.23782 * 17 16 15 19 19 C 1.35040 * 110.23015 * 0.39493 * 17 16 15 20 20 C 1.35365 * 107.22289 * 359.61090 * 19 17 16 21 21 C 1.50701 * 127.24562 * 180.24549 * 20 19 17 22 22 F 1.39902 * 109.47292 * 359.97438 * 21 20 19 23 23 F 1.39903 * 109.47279 * 119.97471 * 21 20 19 24 24 F 1.39895 * 109.47511 * 239.97708 * 21 20 19 25 25 C 1.46964 * 118.80976 * 55.47035 * 12 11 10 26 26 C 1.46965 * 120.59455 * 35.66295 * 9 7 2 27 27 H 0.96994 * 120.00545 * 0.02562 * 1 2 3 28 28 H 1.09007 * 109.61206 * 115.46370 * 10 9 7 29 29 H 1.08998 * 109.75575 * 355.03735 * 10 9 7 30 30 H 1.08997 * 109.61459 * 190.83310 * 11 10 9 31 31 H 1.08999 * 109.60709 * 70.31858 * 11 10 9 32 32 H 1.07994 * 126.38785 * 179.87589 * 19 17 16 33 33 H 1.09001 * 109.61032 * 64.27335 * 25 12 11 34 34 H 1.09006 * 109.60872 * 184.78356 * 25 12 11 35 35 H 1.08999 * 109.60685 * 244.53668 * 26 9 7 36 36 H 1.08997 * 109.60957 * 5.04792 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4403 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0884 -1.2032 -0.0644 9 7 1.3282 -2.3866 0.0835 10 6 1.8888 -3.5219 0.8295 11 6 1.9526 -4.7377 -0.1033 12 7 0.6466 -4.8962 -0.7583 13 6 -0.0248 -6.0619 -0.6766 14 8 -1.0555 -6.2150 -1.3028 15 6 0.4917 -7.1537 0.1737 16 7 1.6427 -7.1703 0.8158 17 7 1.7706 -8.2724 1.4632 18 1 2.5352 -8.5082 2.0116 19 6 0.6890 -9.0570 1.2678 20 6 -0.1547 -8.3809 0.4534 21 6 -1.4997 -8.8387 -0.0492 22 9 -1.7778 -10.1129 0.4571 23 9 -2.4862 -7.9424 0.3759 24 9 -1.4837 -8.8859 -1.4473 25 6 0.0885 -3.7626 -1.5089 26 6 0.0221 -2.5450 -0.5714 27 1 -0.4851 0.8399 -0.0004 28 1 1.2509 -3.7493 1.6837 29 1 2.8917 -3.2748 1.1775 30 1 2.1820 -5.6318 0.4763 31 1 2.7233 -4.5799 -0.8577 32 1 0.5256 -10.0388 1.6869 33 1 0.7296 -3.5370 -2.3611 34 1 -0.9135 -4.0126 -1.8578 35 1 -0.7487 -2.7028 0.1830 36 1 -0.2074 -1.6509 -1.1510 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601206108.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:06:40 Heat of formation + Delta-G solvation = -81.330659 kcal Electronic energy + Delta-G solvation = -27645.062260 eV Core-core repulsion = 23137.959689 eV Total energy + Delta-G solvation = -4507.102571 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.104 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -51.00473 -48.55655 -48.47480 -44.04914 -40.82670 -38.43524 -35.72529 -33.73710 -33.18185 -32.80753 -31.49090 -28.84737 -27.16970 -26.11893 -24.83338 -24.17893 -22.56647 -21.92806 -20.79514 -19.67702 -19.37262 -19.15571 -18.75626 -17.83683 -17.77514 -17.06024 -16.88765 -16.74441 -15.90930 -15.44371 -15.39443 -15.34963 -15.30465 -15.09711 -14.93360 -14.90350 -14.66979 -14.66406 -14.43897 -13.99639 -13.71126 -13.31744 -12.97951 -12.83644 -12.50354 -12.45510 -12.03491 -11.98035 -11.82756 -11.48981 -11.00369 -10.82207 -10.68975 -10.56827 -9.83359 -8.55117 -7.86138 -5.46825 0.20257 0.61490 1.48387 1.49136 1.50085 1.59396 1.77641 2.06361 2.14913 2.50559 2.72991 3.04096 3.27556 3.29640 3.50367 3.66848 3.77377 3.91713 4.23556 4.28938 4.38547 4.45304 4.52877 4.67158 4.68693 4.80934 5.02973 5.13570 5.27626 5.48584 5.63395 5.71577 5.91195 6.36388 6.42940 6.61911 7.01107 7.13340 7.78170 8.35337 9.16341 Molecular weight = 318.10amu Principal moments of inertia in cm(-1) A = 0.027164 B = 0.003573 C = 0.003316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.538751 B = 7835.119281 C = 8442.661299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.044 4.044 3 Si 0.973 3.027 4 H -0.284 1.284 5 H -0.296 1.296 6 H -0.266 1.266 7 C -0.267 4.267 8 H 0.073 0.927 9 N -0.612 5.612 10 C 0.134 3.866 11 C 0.068 3.932 12 N -0.585 5.585 13 C 0.576 3.424 14 O -0.563 6.563 15 C 0.025 3.975 16 N -0.251 5.251 17 N -0.350 5.350 18 H 0.477 0.523 19 C 0.105 3.895 20 C -0.291 4.291 21 C 0.549 3.451 22 F -0.168 7.168 23 F -0.187 7.187 24 F -0.181 7.181 25 C 0.099 3.901 26 C 0.166 3.834 27 H 0.252 0.748 28 H 0.010 0.990 29 H 0.079 0.921 30 H 0.154 0.846 31 H 0.065 0.935 32 H 0.254 0.746 33 H 0.067 0.933 34 H 0.077 0.923 35 H -0.010 1.010 36 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.483 -22.942 5.059 24.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.239 4.239 3 Si 0.800 3.200 4 H -0.210 1.210 5 H -0.222 1.222 6 H -0.190 1.190 7 C -0.397 4.397 8 H 0.091 0.909 9 N -0.335 5.335 10 C 0.008 3.992 11 C -0.057 4.057 12 N -0.316 5.316 13 C 0.362 3.638 14 O -0.441 6.441 15 C -0.136 4.136 16 N -0.086 5.086 17 N -0.064 5.064 18 H 0.329 0.671 19 C -0.043 4.043 20 C -0.303 4.303 21 C 0.493 3.507 22 F -0.150 7.150 23 F -0.168 7.168 24 F -0.163 7.163 25 C -0.025 4.025 26 C 0.040 3.960 27 H 0.061 0.939 28 H 0.028 0.972 29 H 0.097 0.903 30 H 0.170 0.830 31 H 0.084 0.916 32 H 0.270 0.730 33 H 0.085 0.915 34 H 0.096 0.904 35 H 0.008 0.992 36 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 5.805 -22.219 4.929 23.487 hybrid contribution -0.658 0.819 -0.138 1.059 sum 5.147 -21.400 4.790 22.525 Atomic orbital electron populations 1.70040 1.06922 1.25971 1.55222 1.26118 0.96261 1.01723 0.99797 0.85203 0.78086 0.79091 0.77606 1.21033 1.22226 1.19014 1.19532 0.91278 0.83907 1.45003 0.90926 1.44204 1.20030 1.10892 1.58403 1.21408 0.98050 0.87343 0.92448 1.23332 0.82423 1.02645 0.97268 1.47983 1.21318 1.11338 1.50939 1.17488 0.83565 0.81676 0.81065 1.90785 1.25226 1.81359 1.46769 1.21507 0.93707 0.95703 1.02656 1.73166 1.18184 1.07288 1.09948 1.43678 1.18229 1.09830 1.34668 0.67085 1.23348 0.85429 0.99547 0.95999 1.20323 0.98805 0.98550 1.12623 1.17107 0.84020 0.74435 0.75112 1.93171 1.94701 1.40083 1.87018 1.93203 1.65092 1.68737 1.89760 1.93203 1.96767 1.96091 1.30217 1.22392 0.98865 0.86303 0.94906 1.21153 0.86394 0.95235 0.93249 0.93879 0.97167 0.90263 0.82975 0.91628 0.72963 0.91510 0.90446 0.99166 0.89599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.21 10.61 21.65 0.23 -54.98 16 2 C -0.04 -2.40 5.32 84.86 0.45 -1.95 16 3 Si 0.97 44.04 29.56 68.60 2.03 46.06 16 4 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 5 H -0.30 -13.60 7.11 99.48 0.71 -12.89 16 6 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 7 C -0.27 -14.43 9.55 84.03 0.80 -13.63 16 8 H 0.07 3.74 7.83 -2.91 -0.02 3.71 16 9 N -0.61 -31.03 2.97 -697.35 -2.07 -33.10 16 10 C 0.13 5.47 6.67 86.41 0.58 6.05 16 11 C 0.07 2.33 6.49 86.41 0.56 2.89 16 12 N -0.58 -23.08 2.94 -820.72 -2.41 -25.49 16 13 C 0.58 22.20 7.69 86.75 0.67 22.87 16 14 O -0.56 -24.78 13.95 -3.94 -0.05 -24.84 16 15 C 0.03 0.74 6.90 42.45 0.29 1.03 16 16 N -0.25 -5.42 8.56 -48.18 -0.41 -5.83 16 17 N -0.35 -3.50 6.83 -57.51 -0.39 -3.89 16 18 H 0.48 -0.06 8.96 -220.00 -1.97 -2.03 16 19 C 0.11 1.09 11.49 83.54 0.96 2.05 16 20 C -0.29 -6.73 5.66 -19.72 -0.11 -6.84 16 21 C 0.55 14.74 2.85 71.24 0.20 14.94 16 22 F -0.17 -3.39 16.87 44.97 0.76 -2.64 16 23 F -0.19 -6.14 16.62 44.97 0.75 -5.39 16 24 F -0.18 -5.75 16.24 44.97 0.73 -5.02 16 25 C 0.10 4.34 6.61 86.56 0.57 4.91 16 26 C 0.17 8.53 5.48 86.56 0.47 9.01 16 27 H 0.25 14.40 8.31 -92.71 -0.77 13.63 16 28 H 0.01 0.44 8.14 -2.38 -0.02 0.42 16 29 H 0.08 2.97 7.94 -2.39 -0.02 2.95 16 30 H 0.15 4.36 3.67 -90.97 -0.33 4.03 16 31 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 32 H 0.25 -0.23 8.02 -2.91 -0.02 -0.25 16 33 H 0.07 2.82 8.14 -2.39 -0.02 2.80 16 34 H 0.08 3.41 7.02 -2.38 -0.02 3.39 16 35 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 36 H 0.09 4.89 5.85 -2.39 -0.01 4.88 16 Total: -1.00 -77.54 311.36 3.47 -74.07 By element: Atomic # 1 Polarization: 0.84 SS G_CDS: -1.13 Total: -0.29 kcal Atomic # 6 Polarization: 35.88 SS G_CDS: 5.45 Total: 41.33 kcal Atomic # 7 Polarization: -118.23 SS G_CDS: -5.06 Total: -123.30 kcal Atomic # 8 Polarization: -24.78 SS G_CDS: -0.05 Total: -24.84 kcal Atomic # 9 Polarization: -15.28 SS G_CDS: 2.24 Total: -13.04 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.06 kcal Total: -77.54 3.47 -74.07 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601206108.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.261 kcal (2) G-P(sol) polarization free energy of solvation -77.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds