Wall clock time and date at job start Tue Mar 31 2020 12:10:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 119.99931 * 2 1 4 4 H 1.48494 * 109.47295 * 270.00099 * 3 2 1 5 5 H 1.48500 * 109.46908 * 29.99826 * 3 2 1 6 6 H 1.48501 * 109.47251 * 149.99567 * 3 2 1 7 7 C 1.37869 * 120.00017 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00550 * 359.97438 * 7 2 1 9 9 C 1.50706 * 120.00212 * 180.02562 * 7 2 1 10 10 N 1.46497 * 109.47540 * 179.97438 * 9 7 2 11 11 C 1.36453 * 125.85258 * 275.18532 * 10 9 7 12 12 C 1.34957 * 108.94424 * 180.24549 * 11 10 9 13 13 C 1.41207 * 108.24819 * 359.74584 * 12 11 10 14 14 N 1.32932 * 126.37953 * 180.02562 * 13 12 11 15 15 C 1.33832 * 119.99920 * 359.97438 * 14 13 12 16 16 O 1.21834 * 120.00210 * 359.97438 * 15 14 13 17 17 N 1.34783 * 119.99881 * 180.02562 * 15 14 13 18 18 C 1.46496 * 119.99884 * 174.70637 * 17 15 14 19 19 C 1.53004 * 115.55140 * 294.04540 * 18 17 15 20 20 F 1.39900 * 109.46857 * 65.55365 * 19 18 17 21 21 F 1.39894 * 109.46923 * 185.55144 * 19 18 17 22 22 F 1.39902 * 109.46818 * 305.55227 * 19 18 17 23 23 C 1.53000 * 117.50079 * 148.37571 * 18 17 15 24 24 C 1.52997 * 117.49984 * 79.71569 * 18 17 15 25 25 N 1.37418 * 107.23964 * 359.97438 * 13 12 11 26 26 H 0.97003 * 126.36252 * 179.97438 * 25 13 12 27 27 H 0.97004 * 120.00438 * 0.02562 * 1 2 3 28 28 H 1.09000 * 109.47095 * 59.99489 * 9 7 2 29 29 H 1.08998 * 109.46446 * 300.00092 * 9 7 2 30 30 H 1.08001 * 125.52728 * 359.97438 * 11 10 9 31 31 H 1.08011 * 125.87385 * 179.74695 * 12 11 10 32 32 H 0.96996 * 119.99775 * 354.70395 * 17 15 14 33 33 H 1.09004 * 117.49646 * 359.97438 * 23 18 17 34 34 H 1.08995 * 117.50431 * 145.01613 * 23 18 17 35 35 H 1.09009 * 117.50308 * 214.97706 * 24 18 17 36 36 H 1.09005 * 117.50029 * 359.97438 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6526 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0014 9 6 3.5115 -1.1940 0.0011 10 7 3.9999 -2.5752 0.0022 11 6 4.1717 -3.3613 1.1043 12 6 4.6409 -4.5652 0.7149 13 6 4.7706 -4.5556 -0.6912 14 7 5.2019 -5.5581 -1.4501 15 6 5.5643 -6.7164 -0.8861 16 8 5.4994 -6.8519 0.3229 17 7 6.0022 -7.7327 -1.6556 18 6 6.5080 -8.9581 -1.0323 19 6 7.7991 -8.8040 -0.2259 20 9 7.5601 -7.9889 0.8857 21 9 8.2338 -10.0624 0.2034 22 9 8.7839 -8.2196 -1.0297 23 6 6.2990 -10.2727 -1.7867 24 6 5.4783 -9.9722 -0.5300 25 7 4.3667 -3.3171 -1.1289 26 1 4.3444 -3.0116 -2.0493 27 1 -0.4851 0.8400 -0.0004 28 1 3.8745 -0.6799 0.8911 29 1 3.8751 -0.6804 -0.8888 30 1 3.9695 -3.0662 2.1233 31 1 4.8766 -5.3937 1.3666 32 1 5.9823 -7.6526 -2.6221 33 1 5.7847 -10.2258 -2.7466 34 1 7.0811 -11.0278 -1.7084 35 1 5.7208 -10.5298 0.3747 36 1 4.4244 -9.7273 -0.6630 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602853229.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:10:20 Heat of formation + Delta-G solvation = -38.788485 kcal Electronic energy + Delta-G solvation = -26493.416098 eV Core-core repulsion = 21988.158293 eV Total energy + Delta-G solvation = -4505.257804 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.104 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.95068 -47.57698 -47.28733 -40.89895 -39.36750 -37.34086 -34.29708 -32.93044 -32.54565 -31.13808 -30.85686 -27.24593 -26.72608 -23.37094 -22.88898 -22.20969 -21.37076 -20.84704 -19.86036 -18.47292 -18.14297 -17.73226 -17.46462 -17.37671 -16.27115 -15.66195 -15.06533 -14.90463 -14.83405 -14.37006 -14.33023 -14.20936 -14.13480 -13.89515 -13.75963 -13.50634 -13.41431 -13.28811 -12.92119 -12.79153 -12.35058 -12.25695 -11.84676 -11.60325 -11.21411 -11.04312 -10.88354 -10.73676 -10.08063 -9.82263 -9.68897 -9.13111 -9.06403 -8.92585 -8.46127 -6.94107 -6.53473 -4.62164 1.65649 1.92970 2.62034 2.94787 2.99496 3.00842 3.05855 3.08929 3.25833 3.77246 3.95787 4.01490 4.26603 4.28203 4.55636 4.74268 4.75820 4.80312 5.07159 5.17638 5.25000 5.60778 5.62897 5.77773 5.81567 6.02047 6.07690 6.29340 6.54282 6.80724 6.91635 7.22253 7.48245 7.66480 7.96577 8.13620 8.29815 8.50141 8.98907 9.46327 10.58106 Molecular weight = 318.10amu Principal moments of inertia in cm(-1) A = 0.034958 B = 0.002622 C = 0.002574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.760085 B =10677.182546 C =10877.400898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.876 5.876 2 C 0.083 3.917 3 Si 0.875 3.125 4 H -0.271 1.271 5 H -0.277 1.277 6 H -0.263 1.263 7 C -0.565 4.565 8 H 0.086 0.914 9 C 0.229 3.771 10 N -0.344 5.344 11 C 0.166 3.834 12 C -0.329 4.329 13 C 0.490 3.510 14 N -0.709 5.709 15 C 0.683 3.317 16 O -0.606 6.606 17 N -0.691 5.691 18 C 0.055 3.945 19 C 0.478 3.522 20 F -0.155 7.155 21 F -0.185 7.185 22 F -0.182 7.182 23 C -0.148 4.148 24 C -0.140 4.140 25 N -0.469 5.469 26 H 0.445 0.555 27 H 0.273 0.727 28 H 0.065 0.935 29 H 0.044 0.956 30 H 0.189 0.811 31 H 0.186 0.814 32 H 0.407 0.593 33 H 0.116 0.884 34 H 0.115 0.885 35 H 0.110 0.890 36 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.319 -13.831 -2.257 18.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.512 5.512 2 C -0.123 4.123 3 Si 0.700 3.300 4 H -0.196 1.196 5 H -0.202 1.202 6 H -0.188 1.188 7 C -0.603 4.603 8 H 0.104 0.896 9 C 0.111 3.889 10 N -0.130 5.130 11 C 0.022 3.978 12 C -0.361 4.361 13 C 0.237 3.763 14 N -0.474 5.474 15 C 0.382 3.618 16 O -0.485 6.485 17 N -0.346 5.346 18 C -0.037 4.037 19 C 0.422 3.578 20 F -0.136 7.136 21 F -0.167 7.167 22 F -0.164 7.164 23 C -0.186 4.186 24 C -0.179 4.179 25 N -0.192 5.192 26 H 0.292 0.708 27 H 0.083 0.917 28 H 0.083 0.917 29 H 0.062 0.938 30 H 0.206 0.794 31 H 0.203 0.797 32 H 0.244 0.756 33 H 0.134 0.866 34 H 0.133 0.867 35 H 0.128 0.872 36 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 12.086 -13.390 -2.326 18.187 hybrid contribution 0.374 1.205 -0.212 1.279 sum 12.460 -12.185 -2.537 17.612 Atomic orbital electron populations 1.69855 1.06268 1.27899 1.47144 1.24826 0.94864 0.98988 0.93620 0.86891 0.80293 0.83614 0.79184 1.19589 1.20216 1.18759 1.21260 0.87866 0.95916 1.55260 0.89644 1.20340 0.96810 0.72079 0.99656 1.47469 1.57229 1.11753 0.96562 1.22820 0.92606 0.90395 0.91986 1.22440 1.18154 1.00427 0.95111 1.18638 0.84675 0.83395 0.89598 1.67971 1.40959 1.01454 1.36979 1.16638 0.78014 0.83187 0.83922 1.90801 1.59284 1.83874 1.14562 1.43842 1.68248 1.13107 1.09370 1.20855 0.93843 0.85042 1.03997 1.19846 0.85036 0.73700 0.79198 1.93321 1.94132 1.72545 1.53591 1.93133 1.90963 1.41941 1.90650 1.93168 1.65039 1.84612 1.73571 1.23481 1.03351 0.93590 0.98130 1.23434 0.98050 0.98263 0.98116 1.44377 1.61922 1.09476 1.03411 0.70766 0.91694 0.91732 0.93789 0.79414 0.79699 0.75649 0.86608 0.86660 0.87183 0.86711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.84 13.96 55.43 0.77 -23.07 16 2 C 0.08 2.07 5.47 -17.82 -0.10 1.97 16 3 Si 0.87 17.79 27.47 -169.99 -4.67 13.12 16 4 H -0.27 -5.47 7.11 56.52 0.40 -5.06 16 5 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 6 H -0.26 -4.92 6.54 56.52 0.37 -4.55 16 7 C -0.57 -13.58 9.94 -34.44 -0.34 -13.92 16 8 H 0.09 2.36 8.06 -52.48 -0.42 1.93 16 9 C 0.23 4.35 5.26 -5.19 -0.03 4.32 16 10 N -0.34 -6.12 3.63 -62.24 -0.23 -6.35 16 11 C 0.17 2.72 11.45 -16.66 -0.19 2.53 16 12 C -0.33 -5.99 9.52 -39.62 -0.38 -6.37 16 13 C 0.49 9.25 8.07 -155.29 -1.25 8.00 16 14 N -0.71 -13.52 10.59 -15.79 -0.17 -13.69 16 15 C 0.68 12.82 8.25 -87.75 -0.72 12.10 16 16 O -0.61 -12.50 11.02 5.07 0.06 -12.44 16 17 N -0.69 -10.13 5.43 -52.61 -0.29 -10.41 16 18 C 0.06 0.70 1.89 -131.82 -0.25 0.45 16 19 C 0.48 6.77 3.16 37.16 0.12 6.89 16 20 F -0.15 -2.69 14.83 2.25 0.03 -2.65 16 21 F -0.19 -2.27 15.90 2.25 0.04 -2.23 16 22 F -0.18 -2.66 17.30 2.25 0.04 -2.62 16 23 C -0.15 -1.22 9.88 -26.69 -0.26 -1.49 16 24 C -0.14 -1.47 9.92 -26.70 -0.26 -1.74 16 25 N -0.47 -8.06 7.38 31.33 0.23 -7.83 16 26 H 0.45 6.63 8.96 -182.55 -1.64 5.00 16 27 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 28 H 0.07 1.14 7.20 -51.93 -0.37 0.77 16 29 H 0.04 0.79 7.57 -51.93 -0.39 0.40 16 30 H 0.19 2.41 8.06 -52.49 -0.42 1.99 16 31 H 0.19 3.57 5.77 -52.48 -0.30 3.27 16 32 H 0.41 5.11 8.93 -40.82 -0.36 4.75 16 33 H 0.12 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.12 0.78 7.62 -51.93 -0.40 0.39 16 35 H 0.11 1.06 7.95 -51.92 -0.41 0.65 16 36 H 0.11 1.26 8.14 -51.93 -0.42 0.83 16 LS Contribution 325.80 15.07 4.91 4.91 Total: -1.00 -30.93 325.80 -7.68 -38.61 By element: Atomic # 1 Polarization: 16.66 SS G_CDS: -4.74 Total: 11.92 kcal Atomic # 6 Polarization: 16.41 SS G_CDS: -3.67 Total: 12.74 kcal Atomic # 7 Polarization: -61.67 SS G_CDS: 0.33 Total: -61.35 kcal Atomic # 8 Polarization: -12.50 SS G_CDS: 0.06 Total: -12.44 kcal Atomic # 9 Polarization: -7.62 SS G_CDS: 0.11 Total: -7.51 kcal Atomic # 14 Polarization: 17.79 SS G_CDS: -4.67 Total: 13.12 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -30.93 -7.68 -38.61 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602853229.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.177 kcal (2) G-P(sol) polarization free energy of solvation -30.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds