Wall clock time and date at job start Tue Mar 31 2020 12:10:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 119.99931 * 2 1 4 4 H 1.48494 * 109.47295 * 270.00099 * 3 2 1 5 5 H 1.48500 * 109.46908 * 29.99826 * 3 2 1 6 6 H 1.48501 * 109.47251 * 149.99567 * 3 2 1 7 7 C 1.37869 * 120.00017 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00550 * 359.97438 * 7 2 1 9 9 C 1.50706 * 120.00212 * 180.02562 * 7 2 1 10 10 N 1.46497 * 109.47540 * 179.97438 * 9 7 2 11 11 C 1.36453 * 125.85258 * 275.18532 * 10 9 7 12 12 C 1.34957 * 108.94424 * 180.24549 * 11 10 9 13 13 C 1.41207 * 108.24819 * 359.74584 * 12 11 10 14 14 N 1.32932 * 126.37953 * 180.02562 * 13 12 11 15 15 C 1.33832 * 119.99920 * 359.97438 * 14 13 12 16 16 O 1.21834 * 120.00210 * 359.97438 * 15 14 13 17 17 N 1.34783 * 119.99881 * 180.02562 * 15 14 13 18 18 C 1.46496 * 119.99884 * 174.70637 * 17 15 14 19 19 C 1.53004 * 115.55140 * 294.04540 * 18 17 15 20 20 F 1.39900 * 109.46857 * 65.55365 * 19 18 17 21 21 F 1.39894 * 109.46923 * 185.55144 * 19 18 17 22 22 F 1.39902 * 109.46818 * 305.55227 * 19 18 17 23 23 C 1.53000 * 117.50079 * 148.37571 * 18 17 15 24 24 C 1.52997 * 117.49984 * 79.71569 * 18 17 15 25 25 N 1.37418 * 107.23964 * 359.97438 * 13 12 11 26 26 H 0.97003 * 126.36252 * 179.97438 * 25 13 12 27 27 H 0.97004 * 120.00438 * 0.02562 * 1 2 3 28 28 H 1.09000 * 109.47095 * 59.99489 * 9 7 2 29 29 H 1.08998 * 109.46446 * 300.00092 * 9 7 2 30 30 H 1.08001 * 125.52728 * 359.97438 * 11 10 9 31 31 H 1.08011 * 125.87385 * 179.74695 * 12 11 10 32 32 H 0.96996 * 119.99775 * 354.70395 * 17 15 14 33 33 H 1.09004 * 117.49646 * 359.97438 * 23 18 17 34 34 H 1.08995 * 117.50431 * 145.01613 * 23 18 17 35 35 H 1.09009 * 117.50308 * 214.97706 * 24 18 17 36 36 H 1.09005 * 117.50029 * 359.97438 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6526 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0014 9 6 3.5115 -1.1940 0.0011 10 7 3.9999 -2.5752 0.0022 11 6 4.1717 -3.3613 1.1043 12 6 4.6409 -4.5652 0.7149 13 6 4.7706 -4.5556 -0.6912 14 7 5.2019 -5.5581 -1.4501 15 6 5.5643 -6.7164 -0.8861 16 8 5.4994 -6.8519 0.3229 17 7 6.0022 -7.7327 -1.6556 18 6 6.5080 -8.9581 -1.0323 19 6 7.7991 -8.8040 -0.2259 20 9 7.5601 -7.9889 0.8857 21 9 8.2338 -10.0624 0.2034 22 9 8.7839 -8.2196 -1.0297 23 6 6.2990 -10.2727 -1.7867 24 6 5.4783 -9.9722 -0.5300 25 7 4.3667 -3.3171 -1.1289 26 1 4.3444 -3.0116 -2.0493 27 1 -0.4851 0.8400 -0.0004 28 1 3.8745 -0.6799 0.8911 29 1 3.8751 -0.6804 -0.8888 30 1 3.9695 -3.0662 2.1233 31 1 4.8766 -5.3937 1.3666 32 1 5.9823 -7.6526 -2.6221 33 1 5.7847 -10.2258 -2.7466 34 1 7.0811 -11.0278 -1.7084 35 1 5.7208 -10.5298 0.3747 36 1 4.4244 -9.7273 -0.6630 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602853229.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:10:19 Heat of formation + Delta-G solvation = -60.856958 kcal Electronic energy + Delta-G solvation = -26494.373059 eV Core-core repulsion = 21988.158293 eV Total energy + Delta-G solvation = -4506.214765 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.104 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -51.05679 -48.64524 -48.48375 -42.29459 -40.59352 -38.42597 -35.87924 -34.59012 -33.76933 -32.51982 -32.39721 -28.79256 -27.83797 -24.86243 -23.79734 -23.53193 -22.72592 -22.03038 -21.14692 -19.58144 -19.27836 -19.25868 -18.88364 -18.71491 -17.63841 -16.82434 -16.60375 -16.27025 -16.06961 -15.80484 -15.45515 -15.36128 -15.27784 -15.00109 -14.98222 -14.74646 -14.69214 -14.58004 -14.47370 -14.28816 -13.77832 -13.38795 -13.20114 -12.59612 -12.54825 -12.33006 -12.07146 -11.82913 -11.79909 -11.25359 -11.21315 -10.91720 -10.51704 -10.12366 -9.92214 -8.43024 -8.36568 -6.55764 0.25872 0.56629 1.39488 1.40610 1.49409 1.53373 1.71503 2.00550 2.26265 2.31094 2.73482 2.87261 2.94632 2.98837 3.25098 3.38629 3.72724 3.82931 3.90265 4.22134 4.32351 4.43401 4.57007 4.60807 4.69427 4.86191 4.90348 5.05477 5.15548 5.22935 5.56903 5.87604 6.00669 6.08367 6.40477 6.54342 6.83513 6.91406 7.10668 8.07002 8.74313 Molecular weight = 318.10amu Principal moments of inertia in cm(-1) A = 0.034958 B = 0.002622 C = 0.002574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.760085 B =10677.182546 C =10877.400898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C 0.023 3.977 3 Si 0.949 3.051 4 H -0.266 1.266 5 H -0.286 1.286 6 H -0.225 1.225 7 C -0.566 4.566 8 H 0.033 0.967 9 C 0.235 3.765 10 N -0.349 5.349 11 C 0.179 3.821 12 C -0.345 4.345 13 C 0.474 3.526 14 N -0.719 5.719 15 C 0.670 3.330 16 O -0.631 6.631 17 N -0.680 5.680 18 C 0.021 3.979 19 C 0.474 3.526 20 F -0.180 7.180 21 F -0.174 7.174 22 F -0.188 7.188 23 C -0.106 4.106 24 C -0.145 4.145 25 N -0.465 5.465 26 H 0.453 0.547 27 H 0.273 0.727 28 H 0.095 0.905 29 H 0.066 0.934 30 H 0.225 0.775 31 H 0.173 0.827 32 H 0.416 0.584 33 H 0.139 0.861 34 H 0.137 0.863 35 H 0.116 0.884 36 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.122 -13.666 -2.721 19.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.178 4.178 3 Si 0.770 3.230 4 H -0.191 1.191 5 H -0.212 1.212 6 H -0.148 1.148 7 C -0.604 4.604 8 H 0.052 0.948 9 C 0.116 3.884 10 N -0.135 5.135 11 C 0.036 3.964 12 C -0.377 4.377 13 C 0.220 3.780 14 N -0.484 5.484 15 C 0.369 3.631 16 O -0.513 6.513 17 N -0.335 5.335 18 C -0.071 4.071 19 C 0.418 3.582 20 F -0.161 7.161 21 F -0.155 7.155 22 F -0.169 7.169 23 C -0.143 4.143 24 C -0.183 4.183 25 N -0.189 5.189 26 H 0.302 0.698 27 H 0.082 0.918 28 H 0.112 0.888 29 H 0.084 0.916 30 H 0.241 0.759 31 H 0.190 0.810 32 H 0.254 0.746 33 H 0.157 0.843 34 H 0.155 0.845 35 H 0.135 0.865 36 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 13.930 -13.273 -2.823 19.447 hybrid contribution -0.218 1.006 -0.069 1.032 sum 13.712 -12.267 -2.892 18.624 Atomic orbital electron populations 1.70033 1.08725 1.29014 1.49667 1.25826 0.95532 1.03409 0.92989 0.85719 0.80068 0.77593 0.79601 1.19073 1.21163 1.14766 1.21441 0.90703 0.93889 1.54347 0.94826 1.20267 0.93280 0.72966 1.01850 1.47453 1.57285 1.11765 0.97014 1.23355 0.90642 0.89366 0.93086 1.22334 1.19444 1.00978 0.94944 1.18870 0.85058 0.83841 0.90185 1.68032 1.41352 1.01795 1.37216 1.16965 0.78180 0.83858 0.84050 1.90779 1.60417 1.84417 1.15650 1.43717 1.67201 1.13007 1.09597 1.21155 0.93852 0.85508 1.06625 1.20107 0.85727 0.73642 0.78694 1.93268 1.94330 1.73482 1.55022 1.93146 1.90915 1.40894 1.90561 1.93150 1.65406 1.84833 1.73553 1.23723 1.02353 0.90250 0.97965 1.23502 0.97379 0.97439 0.99981 1.44374 1.61688 1.09035 1.03799 0.69770 0.91778 0.88752 0.91600 0.75888 0.80957 0.74576 0.84290 0.84457 0.86533 0.87442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -52.25 13.96 21.44 0.30 -51.95 16 2 C 0.02 1.14 5.47 84.65 0.46 1.60 16 3 Si 0.95 35.08 27.47 68.60 1.88 36.97 16 4 H -0.27 -9.60 7.11 99.48 0.71 -8.89 16 5 H -0.29 -10.94 7.11 99.48 0.71 -10.23 16 6 H -0.23 -6.92 6.54 99.48 0.65 -6.27 16 7 C -0.57 -27.04 9.94 25.60 0.25 -26.78 16 8 H 0.03 1.91 8.06 -2.91 -0.02 1.89 16 9 C 0.23 8.27 5.26 85.64 0.45 8.72 16 10 N -0.35 -11.85 3.63 -350.84 -1.28 -13.13 16 11 C 0.18 5.62 11.45 83.22 0.95 6.57 16 12 C -0.34 -12.56 9.52 22.24 0.21 -12.35 16 13 C 0.47 17.89 8.07 133.95 1.08 18.97 16 14 N -0.72 -27.57 10.59 -322.56 -3.42 -30.98 16 15 C 0.67 25.38 8.25 179.35 1.48 26.86 16 16 O -0.63 -26.61 11.02 -4.78 -0.05 -26.66 16 17 N -0.68 -19.58 5.43 -438.52 -2.38 -21.96 16 18 C 0.02 0.50 1.89 3.60 0.01 0.50 16 19 C 0.47 13.14 3.16 71.98 0.23 13.37 16 20 F -0.18 -6.35 14.83 44.97 0.67 -5.68 16 21 F -0.17 -4.01 15.90 44.97 0.72 -3.30 16 22 F -0.19 -5.38 17.30 44.97 0.78 -4.61 16 23 C -0.11 -1.43 9.88 30.62 0.30 -1.13 16 24 C -0.14 -2.83 9.92 30.62 0.30 -2.53 16 25 N -0.46 -15.62 7.38 -54.79 -0.40 -16.02 16 26 H 0.45 13.13 8.96 -213.28 -1.91 11.22 16 27 H 0.27 14.19 8.31 -92.71 -0.77 13.42 16 28 H 0.09 2.88 7.20 -2.39 -0.02 2.86 16 29 H 0.07 2.10 7.57 -2.39 -0.02 2.09 16 30 H 0.22 5.15 8.06 -2.91 -0.02 5.13 16 31 H 0.17 6.82 5.77 -2.90 -0.02 6.80 16 32 H 0.42 10.05 8.93 -92.71 -0.83 9.22 16 33 H 0.14 1.28 8.14 -2.38 -0.02 1.26 16 34 H 0.14 1.31 7.62 -2.39 -0.02 1.29 16 35 H 0.12 2.09 7.95 -2.38 -0.02 2.07 16 36 H 0.11 2.27 8.14 -2.38 -0.02 2.25 16 Total: -1.00 -70.36 325.80 0.92 -69.43 By element: Atomic # 1 Polarization: 35.73 SS G_CDS: -1.62 Total: 34.10 kcal Atomic # 6 Polarization: 28.07 SS G_CDS: 5.73 Total: 33.80 kcal Atomic # 7 Polarization: -126.87 SS G_CDS: -7.18 Total: -134.05 kcal Atomic # 8 Polarization: -26.61 SS G_CDS: -0.05 Total: -26.66 kcal Atomic # 9 Polarization: -15.75 SS G_CDS: 2.16 Total: -13.59 kcal Atomic # 14 Polarization: 35.08 SS G_CDS: 1.88 Total: 36.97 kcal Total: -70.36 0.92 -69.43 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602853229.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.576 kcal (2) G-P(sol) polarization free energy of solvation -70.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds