Wall clock time and date at job start Tue Mar 31 2020 12:28:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47238 * 2 1 4 4 H 1.09001 * 109.46877 * 305.00352 * 3 2 1 5 5 C 1.50693 * 109.47513 * 185.00277 * 3 2 1 6 6 H 1.08002 * 119.99741 * 240.00213 * 5 3 2 7 7 C 1.37882 * 120.00318 * 59.99829 * 5 3 2 8 8 N 1.31510 * 119.99465 * 0.02562 * 7 5 3 9 9 Si 1.86791 * 120.00245 * 180.02562 * 7 5 3 10 10 H 1.48507 * 109.47222 * 60.00071 * 9 7 5 11 11 H 1.48495 * 109.47219 * 180.02562 * 9 7 5 12 12 H 1.48508 * 109.47157 * 300.00250 * 9 7 5 13 13 N 1.46502 * 109.47157 * 64.99907 * 3 2 1 14 14 C 1.34776 * 119.99849 * 275.00605 * 13 3 2 15 15 O 1.21586 * 120.00555 * 359.97438 * 14 13 3 16 16 N 1.34781 * 119.99590 * 179.97438 * 14 13 3 17 17 C 1.40003 * 119.99789 * 174.70139 * 16 14 13 18 18 C 1.39230 * 120.87245 * 327.43396 * 17 16 14 19 19 N 1.32267 * 119.01781 * 179.74377 * 18 17 16 20 20 C 1.31796 * 120.88860 * 0.56728 * 19 18 17 21 21 C 1.50702 * 119.03700 * 179.70702 * 20 19 18 22 22 F 1.39897 * 109.46997 * 284.97772 * 21 20 19 23 23 F 1.39906 * 109.47093 * 44.97498 * 21 20 19 24 24 F 1.39896 * 109.47014 * 164.97493 * 21 20 19 25 25 N 1.31792 * 121.92500 * 359.68232 * 20 19 18 26 26 C 1.32272 * 120.89045 * 0.02562 * 25 20 19 27 27 H 1.09006 * 109.46588 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47075 * 299.99685 * 1 2 3 29 29 H 1.08998 * 109.47008 * 60.00086 * 1 2 3 30 30 H 1.08999 * 109.47075 * 240.00314 * 2 1 3 31 31 H 1.09002 * 109.47605 * 120.00346 * 2 1 3 32 32 H 0.97002 * 119.99929 * 179.97438 * 8 7 5 33 33 H 0.97001 * 119.99958 * 94.72602 * 13 3 2 34 34 H 0.96998 * 120.00142 * 354.70844 * 16 14 13 35 35 H 1.08002 * 120.49048 * 0.02562 * 18 17 16 36 36 H 1.07999 * 120.48778 * 180.02562 * 26 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 3.5419 1.4444 -0.1239 6 1 4.1471 1.8889 0.6523 7 6 4.1433 0.8785 -1.2281 8 7 3.4062 0.3375 -2.1733 9 14 6.0049 0.8802 -1.3813 10 1 6.5967 0.1454 -0.2344 11 1 6.3977 0.2169 -2.6505 12 1 6.5004 2.2802 -1.3809 13 7 1.6525 2.0975 1.2518 14 6 0.4351 2.6643 1.3669 15 8 -0.3413 2.6325 0.4318 16 7 0.0784 3.2664 2.5188 17 6 -1.1400 3.9510 2.6027 18 6 -1.6695 4.6056 1.4939 19 7 -2.8258 5.2367 1.6130 20 6 -3.4684 5.2601 2.7634 21 6 -4.7797 5.9973 2.8539 22 9 -4.5393 7.3753 2.8780 23 9 -5.5700 5.6812 1.7435 24 9 -5.4471 5.6198 4.0239 25 7 -2.9981 4.6572 3.8368 26 6 -1.8510 3.9998 3.7987 27 1 -0.3633 -1.0278 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 3.8292 -0.0603 -2.9503 33 1 2.2704 2.1197 1.9991 34 1 0.6659 3.2256 3.2896 35 1 -1.1461 4.5944 0.5492 36 1 -1.4718 3.5078 4.6822 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603037654.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:28:58 Heat of formation + Delta-G solvation = -124.712505 kcal Electronic energy + Delta-G solvation = -26322.050255 eV Core-core repulsion = 21813.066506 eV Total energy + Delta-G solvation = -4508.983749 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.104 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -50.29642 -47.82092 -47.78458 -41.65342 -39.82324 -36.15797 -34.86044 -34.13883 -32.77157 -31.61658 -30.58477 -27.47125 -26.49584 -25.21469 -23.59162 -22.93768 -21.24648 -19.84713 -19.23219 -19.19363 -18.72894 -18.38258 -17.81532 -17.19171 -16.19671 -15.77476 -15.30450 -15.24268 -14.87865 -14.58321 -14.53703 -14.38458 -14.20163 -13.92900 -13.92745 -13.89073 -13.62987 -12.94080 -12.79471 -12.64544 -11.86161 -11.76375 -11.38494 -11.28028 -11.20413 -11.11784 -10.93235 -10.49666 -10.34510 -9.94690 -9.75778 -9.62577 -9.22490 -8.75356 -8.65126 -8.09088 -6.25709 -4.36350 0.26984 0.71302 2.06333 2.61643 3.07109 3.16881 3.23387 3.23618 3.24566 3.38718 3.53681 4.05892 4.19354 4.20997 4.33331 4.43122 4.51434 4.74989 5.06393 5.43685 5.67465 6.21553 6.25878 6.31025 6.47044 6.53761 6.64415 6.90489 7.10940 7.11730 7.22782 7.47417 7.49195 7.63997 7.74467 8.01925 8.44153 8.61119 8.87872 9.31216 10.79511 Molecular weight = 318.10amu Principal moments of inertia in cm(-1) A = 0.031506 B = 0.002614 C = 0.002590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.500667 B =10710.397062 C =10806.744484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.130 4.130 3 C 0.285 3.715 4 H 0.053 0.947 5 C -0.540 4.540 6 H 0.062 0.938 7 C 0.069 3.931 8 N -0.880 5.880 9 Si 0.903 3.097 10 H -0.276 1.276 11 H -0.285 1.285 12 H -0.276 1.276 13 N -0.708 5.708 14 C 0.690 3.310 15 O -0.570 6.570 16 N -0.682 5.682 17 C 0.123 3.877 18 C 0.149 3.851 19 N -0.454 5.454 20 C 0.190 3.810 21 C 0.552 3.448 22 F -0.167 7.167 23 F -0.161 7.161 24 F -0.159 7.159 25 N -0.455 5.455 26 C 0.111 3.889 27 H 0.023 0.977 28 H 0.035 0.965 29 H 0.051 0.949 30 H 0.102 0.898 31 H 0.032 0.968 32 H 0.267 0.733 33 H 0.389 0.611 34 H 0.412 0.588 35 H 0.196 0.804 36 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.930 7.428 12.506 17.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.169 4.169 3 C 0.184 3.816 4 H 0.071 0.929 5 C -0.578 4.578 6 H 0.080 0.920 7 C -0.135 4.135 8 N -0.517 5.517 9 Si 0.730 3.270 10 H -0.201 1.201 11 H -0.210 1.210 12 H -0.201 1.201 13 N -0.358 5.358 14 C 0.390 3.610 15 O -0.446 6.446 16 N -0.330 5.330 17 C 0.019 3.981 18 C -0.021 4.021 19 N -0.167 5.167 20 C -0.081 4.081 21 C 0.495 3.505 22 F -0.148 7.148 23 F -0.142 7.142 24 F -0.140 7.140 25 N -0.169 5.169 26 C -0.058 4.058 27 H 0.042 0.958 28 H 0.054 0.946 29 H 0.070 0.930 30 H 0.120 0.880 31 H 0.051 0.949 32 H 0.077 0.923 33 H 0.222 0.778 34 H 0.248 0.752 35 H 0.213 0.787 36 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -10.385 7.710 11.411 17.248 hybrid contribution 2.254 -0.550 0.629 2.404 sum -8.131 7.161 12.040 16.197 Atomic orbital electron populations 1.21825 0.98249 0.98184 1.01121 1.21981 0.92652 0.99720 1.02518 1.18833 0.94301 0.88988 0.79466 0.92907 1.21132 0.90360 1.39732 1.06572 0.92032 1.24870 0.98767 0.94608 0.95276 1.69869 1.35403 1.37106 1.09279 0.86481 0.84524 0.78382 0.77565 1.20128 1.21047 1.20130 1.45923 1.12481 1.57858 1.19527 1.16166 0.84015 0.78938 0.81899 1.90950 1.51547 1.64291 1.37858 1.42921 1.18858 1.55086 1.16117 1.19519 0.88619 0.92921 0.97058 1.23652 0.90202 0.88297 0.99927 1.68000 1.07645 1.16718 1.24374 1.22320 0.97366 1.00936 0.87446 1.17031 0.82347 0.76776 0.74297 1.93241 1.94375 1.31010 1.96165 1.93258 1.75385 1.92558 1.53031 1.93241 1.81501 1.91049 1.48232 1.67852 1.12459 1.06832 1.29707 1.23059 0.88748 0.96332 0.97710 0.95753 0.94586 0.93010 0.88028 0.94926 0.92294 0.77830 0.75193 0.78715 0.80029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.82 8.51 37.16 0.32 -2.51 16 2 C -0.13 -2.89 5.45 -26.73 -0.15 -3.04 16 3 C 0.29 6.43 2.24 -69.09 -0.15 6.28 16 4 H 0.05 1.40 7.58 -51.93 -0.39 1.00 16 5 C -0.54 -13.02 8.73 -34.44 -0.30 -13.32 16 6 H 0.06 1.41 7.74 -52.49 -0.41 1.00 16 7 C 0.07 1.72 5.29 -17.82 -0.09 1.63 16 8 N -0.88 -23.22 11.29 55.43 0.63 -22.59 16 9 Si 0.90 19.40 29.54 -169.99 -5.02 14.38 16 10 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 11 H -0.29 -6.17 7.11 56.52 0.40 -5.77 16 12 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 13 N -0.71 -12.28 5.02 -59.81 -0.30 -12.58 16 14 C 0.69 11.28 6.90 -86.91 -0.60 10.68 16 15 O -0.57 -11.35 11.19 5.29 0.06 -11.29 16 16 N -0.68 -7.75 5.38 -14.03 -0.08 -7.82 16 17 C 0.12 1.48 6.34 -83.39 -0.53 0.95 16 18 C 0.15 2.11 9.94 -17.00 -0.17 1.94 16 19 N -0.45 -6.67 10.20 -10.58 -0.11 -6.77 16 20 C 0.19 2.61 7.09 -157.19 -1.11 1.50 16 21 C 0.55 7.00 3.49 36.01 0.13 7.13 16 22 F -0.17 -2.06 17.30 2.25 0.04 -2.02 16 23 F -0.16 -2.11 17.20 2.25 0.04 -2.07 16 24 F -0.16 -1.94 16.87 2.25 0.04 -1.90 16 25 N -0.46 -5.70 9.82 -10.58 -0.10 -5.80 16 26 C 0.11 1.14 11.26 -17.00 -0.19 0.95 16 27 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.04 0.72 5.64 -51.93 -0.29 0.42 16 29 H 0.05 1.15 7.84 -51.93 -0.41 0.74 16 30 H 0.10 2.55 5.95 -51.93 -0.31 2.24 16 31 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.27 6.75 8.31 -40.82 -0.34 6.41 16 33 H 0.39 5.58 8.56 -40.82 -0.35 5.23 16 34 H 0.41 3.07 8.84 -40.82 -0.36 2.71 16 35 H 0.20 2.97 6.48 -52.49 -0.34 2.63 16 36 H 0.18 1.13 8.06 -52.49 -0.42 0.70 16 LS Contribution 321.65 15.07 4.85 4.85 Total: -1.00 -28.65 321.65 -6.08 -34.73 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: -3.26 Total: 6.70 kcal Atomic # 6 Polarization: 15.05 SS G_CDS: -2.86 Total: 12.19 kcal Atomic # 7 Polarization: -55.61 SS G_CDS: 0.04 Total: -55.57 kcal Atomic # 8 Polarization: -11.35 SS G_CDS: 0.06 Total: -11.29 kcal Atomic # 9 Polarization: -6.11 SS G_CDS: 0.12 Total: -5.99 kcal Atomic # 14 Polarization: 19.40 SS G_CDS: -5.02 Total: 14.38 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -28.65 -6.08 -34.73 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603037654.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.981 kcal (2) G-P(sol) polarization free energy of solvation -28.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds