Wall clock time and date at job start Tue Mar 31 2020 12:28:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47238 * 2 1 4 4 H 1.09001 * 109.46877 * 305.00352 * 3 2 1 5 5 C 1.50693 * 109.47513 * 185.00277 * 3 2 1 6 6 H 1.08002 * 119.99741 * 240.00213 * 5 3 2 7 7 C 1.37882 * 120.00318 * 59.99829 * 5 3 2 8 8 N 1.31510 * 119.99465 * 0.02562 * 7 5 3 9 9 Si 1.86791 * 120.00245 * 180.02562 * 7 5 3 10 10 H 1.48507 * 109.47222 * 60.00071 * 9 7 5 11 11 H 1.48495 * 109.47219 * 180.02562 * 9 7 5 12 12 H 1.48508 * 109.47157 * 300.00250 * 9 7 5 13 13 N 1.46502 * 109.47157 * 64.99907 * 3 2 1 14 14 C 1.34776 * 119.99849 * 275.00605 * 13 3 2 15 15 O 1.21586 * 120.00555 * 359.97438 * 14 13 3 16 16 N 1.34781 * 119.99590 * 179.97438 * 14 13 3 17 17 C 1.40003 * 119.99789 * 174.70139 * 16 14 13 18 18 C 1.39230 * 120.87245 * 327.43396 * 17 16 14 19 19 N 1.32267 * 119.01781 * 179.74377 * 18 17 16 20 20 C 1.31796 * 120.88860 * 0.56728 * 19 18 17 21 21 C 1.50702 * 119.03700 * 179.70702 * 20 19 18 22 22 F 1.39897 * 109.46997 * 284.97772 * 21 20 19 23 23 F 1.39906 * 109.47093 * 44.97498 * 21 20 19 24 24 F 1.39896 * 109.47014 * 164.97493 * 21 20 19 25 25 N 1.31792 * 121.92500 * 359.68232 * 20 19 18 26 26 C 1.32272 * 120.89045 * 0.02562 * 25 20 19 27 27 H 1.09006 * 109.46588 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47075 * 299.99685 * 1 2 3 29 29 H 1.08998 * 109.47008 * 60.00086 * 1 2 3 30 30 H 1.08999 * 109.47075 * 240.00314 * 2 1 3 31 31 H 1.09002 * 109.47605 * 120.00346 * 2 1 3 32 32 H 0.97002 * 119.99929 * 179.97438 * 8 7 5 33 33 H 0.97001 * 119.99958 * 94.72602 * 13 3 2 34 34 H 0.96998 * 120.00142 * 354.70844 * 16 14 13 35 35 H 1.08002 * 120.49048 * 0.02562 * 18 17 16 36 36 H 1.07999 * 120.48778 * 180.02562 * 26 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 3.5419 1.4444 -0.1239 6 1 4.1471 1.8889 0.6523 7 6 4.1433 0.8785 -1.2281 8 7 3.4062 0.3375 -2.1733 9 14 6.0049 0.8802 -1.3813 10 1 6.5967 0.1454 -0.2344 11 1 6.3977 0.2169 -2.6505 12 1 6.5004 2.2802 -1.3809 13 7 1.6525 2.0975 1.2518 14 6 0.4351 2.6643 1.3669 15 8 -0.3413 2.6325 0.4318 16 7 0.0784 3.2664 2.5188 17 6 -1.1400 3.9510 2.6027 18 6 -1.6695 4.6056 1.4939 19 7 -2.8258 5.2367 1.6130 20 6 -3.4684 5.2601 2.7634 21 6 -4.7797 5.9973 2.8539 22 9 -4.5393 7.3753 2.8780 23 9 -5.5700 5.6812 1.7435 24 9 -5.4471 5.6198 4.0239 25 7 -2.9981 4.6572 3.8368 26 6 -1.8510 3.9998 3.7987 27 1 -0.3633 -1.0278 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 3.8292 -0.0603 -2.9503 33 1 2.2704 2.1197 1.9991 34 1 0.6659 3.2256 3.2896 35 1 -1.1461 4.5944 0.5492 36 1 -1.4718 3.5078 4.6822 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603037654.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:28:57 Heat of formation + Delta-G solvation = -144.444406 kcal Electronic energy + Delta-G solvation = -26322.905895 eV Core-core repulsion = 21813.066506 eV Total energy + Delta-G solvation = -4509.839389 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.104 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -51.29643 -48.82204 -48.78191 -42.69594 -41.12417 -37.59692 -36.24503 -35.16813 -34.42836 -33.11447 -31.91484 -29.06784 -27.73871 -26.21805 -25.12124 -24.24904 -22.59730 -21.47116 -20.44111 -20.20022 -19.73119 -19.53910 -19.01765 -18.31100 -17.81770 -17.08165 -16.67955 -16.41916 -16.18781 -15.92472 -15.57918 -15.52967 -15.20235 -15.16043 -14.92756 -14.91600 -14.85958 -14.56557 -14.19268 -13.93535 -13.54156 -13.16759 -12.90359 -12.85144 -12.65571 -12.41605 -12.27644 -12.18603 -12.06628 -11.57434 -11.31405 -11.04634 -10.70633 -10.52090 -9.93842 -9.54116 -8.14940 -6.31613 -0.75332 -0.25436 1.05544 1.43966 1.48518 1.51458 1.57259 1.93270 2.23823 2.32344 2.42828 2.45011 3.04588 3.15823 3.19285 3.37833 3.40441 3.52855 3.61947 4.51487 4.56410 4.58568 4.60608 4.76816 5.06071 5.19107 5.25316 5.43602 5.48420 5.55490 5.60891 5.67423 5.85389 6.11853 6.18415 6.47580 6.76010 7.11532 7.35616 7.57374 8.89963 Molecular weight = 318.10amu Principal moments of inertia in cm(-1) A = 0.031506 B = 0.002614 C = 0.002590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.500667 B =10710.397062 C =10806.744484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.123 4.123 3 C 0.296 3.704 4 H 0.005 0.995 5 C -0.547 4.547 6 H 0.075 0.925 7 C 0.018 3.982 8 N -0.914 5.914 9 Si 0.966 3.034 10 H -0.264 1.264 11 H -0.291 1.291 12 H -0.272 1.272 13 N -0.704 5.704 14 C 0.693 3.307 15 O -0.607 6.607 16 N -0.656 5.656 17 C 0.122 3.878 18 C 0.130 3.870 19 N -0.475 5.475 20 C 0.182 3.818 21 C 0.555 3.445 22 F -0.165 7.165 23 F -0.166 7.166 24 F -0.154 7.154 25 N -0.461 5.461 26 C 0.139 3.861 27 H 0.040 0.960 28 H 0.044 0.956 29 H 0.025 0.975 30 H 0.071 0.929 31 H 0.044 0.956 32 H 0.264 0.736 33 H 0.407 0.593 34 H 0.435 0.565 35 H 0.176 0.824 36 H 0.233 0.767 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.187 7.375 15.356 18.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.162 4.162 3 C 0.193 3.807 4 H 0.023 0.977 5 C -0.585 4.585 6 H 0.094 0.906 7 C -0.183 4.183 8 N -0.552 5.552 9 Si 0.792 3.208 10 H -0.189 1.189 11 H -0.217 1.217 12 H -0.197 1.197 13 N -0.356 5.356 14 C 0.393 3.607 15 O -0.486 6.486 16 N -0.306 5.306 17 C 0.018 3.982 18 C -0.039 4.039 19 N -0.189 5.189 20 C -0.089 4.089 21 C 0.499 3.501 22 F -0.147 7.147 23 F -0.147 7.147 24 F -0.136 7.136 25 N -0.174 5.174 26 C -0.031 4.031 27 H 0.060 0.940 28 H 0.063 0.937 29 H 0.044 0.956 30 H 0.089 0.911 31 H 0.062 0.938 32 H 0.074 0.926 33 H 0.243 0.757 34 H 0.276 0.724 35 H 0.193 0.807 36 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges -9.633 7.691 14.334 18.905 hybrid contribution 1.957 -0.486 -0.213 2.027 sum -7.676 7.205 14.121 17.614 Atomic orbital electron populations 1.21657 0.97074 0.98942 1.00236 1.21823 0.93573 0.99311 1.01490 1.18317 0.93452 0.88844 0.80136 0.97716 1.21529 0.91329 1.38955 1.06701 0.90648 1.25699 1.02917 0.94487 0.95153 1.70030 1.37047 1.38269 1.09833 0.85482 0.79543 0.78375 0.77429 1.18914 1.21673 1.19739 1.45432 1.13446 1.58086 1.18602 1.16166 0.83207 0.78695 0.82599 1.90949 1.52507 1.65435 1.39735 1.42402 1.19033 1.53864 1.15307 1.19508 0.88762 0.92787 0.97180 1.23449 0.90553 0.89544 1.00319 1.67928 1.08148 1.17549 1.25264 1.22480 0.97611 1.01244 0.87561 1.16959 0.82139 0.76773 0.74270 1.93242 1.94362 1.30902 1.96158 1.93247 1.75503 1.92608 1.53363 1.93247 1.81377 1.91021 1.47917 1.67982 1.13320 1.07179 1.28958 1.23812 0.87092 0.94090 0.98148 0.94048 0.93719 0.95565 0.91078 0.93753 0.92646 0.75731 0.72374 0.80662 0.75075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.03 8.51 71.98 0.61 -4.42 16 2 C -0.12 -5.50 5.45 30.59 0.17 -5.33 16 3 C 0.30 13.47 2.24 44.24 0.10 13.57 16 4 H 0.00 0.27 7.58 -2.39 -0.02 0.25 16 5 C -0.55 -26.18 8.73 25.60 0.22 -25.95 16 6 H 0.08 3.31 7.74 -2.91 -0.02 3.29 16 7 C 0.02 0.90 5.29 84.66 0.45 1.35 16 8 N -0.91 -49.45 11.29 21.45 0.24 -49.21 16 9 Si 0.97 39.48 29.54 68.60 2.03 41.50 16 10 H -0.26 -10.24 7.11 99.48 0.71 -9.54 16 11 H -0.29 -12.06 7.11 99.48 0.71 -11.35 16 12 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 13 N -0.70 -23.59 5.02 -461.41 -2.32 -25.91 16 14 C 0.69 21.93 6.90 179.05 1.24 23.17 16 15 O -0.61 -24.52 11.19 -3.99 -0.04 -24.56 16 16 N -0.66 -13.15 5.38 -316.57 -1.70 -14.85 16 17 C 0.12 2.64 6.34 38.31 0.24 2.88 16 18 C 0.13 3.66 9.94 84.87 0.84 4.51 16 19 N -0.47 -13.89 10.20 -187.39 -1.91 -15.80 16 20 C 0.18 4.77 7.09 138.75 0.98 5.75 16 21 C 0.56 13.60 3.49 71.24 0.25 13.85 16 22 F -0.17 -3.96 17.30 44.97 0.78 -3.18 16 23 F -0.17 -4.30 17.20 44.97 0.77 -3.53 16 24 F -0.15 -3.54 16.87 44.97 0.76 -2.79 16 25 N -0.46 -10.31 9.82 -187.39 -1.84 -12.15 16 26 C 0.14 2.31 11.26 84.86 0.96 3.27 16 27 H 0.04 1.53 8.14 -2.38 -0.02 1.51 16 28 H 0.04 1.74 5.64 -2.39 -0.01 1.73 16 29 H 0.03 1.18 7.84 -2.39 -0.02 1.16 16 30 H 0.07 3.66 5.95 -2.39 -0.01 3.65 16 31 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 32 H 0.26 13.74 8.31 -92.71 -0.77 12.97 16 33 H 0.41 10.66 8.56 -92.71 -0.79 9.87 16 34 H 0.44 4.68 8.84 -92.71 -0.82 3.86 16 35 H 0.18 5.61 6.48 -2.91 -0.02 5.59 16 36 H 0.23 1.45 8.06 -2.91 -0.02 1.43 16 Total: -1.00 -64.13 321.65 2.39 -61.74 By element: Atomic # 1 Polarization: 16.51 SS G_CDS: -0.43 Total: 16.08 kcal Atomic # 6 Polarization: 26.58 SS G_CDS: 6.06 Total: 32.64 kcal Atomic # 7 Polarization: -110.38 SS G_CDS: -7.53 Total: -117.91 kcal Atomic # 8 Polarization: -24.52 SS G_CDS: -0.04 Total: -24.56 kcal Atomic # 9 Polarization: -11.80 SS G_CDS: 2.31 Total: -9.49 kcal Atomic # 14 Polarization: 39.48 SS G_CDS: 2.03 Total: 41.50 kcal Total: -64.13 2.39 -61.74 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603037654.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.702 kcal (2) G-P(sol) polarization free energy of solvation -64.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds