Wall clock time and date at job start Tue Mar 31 2020 12:43:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46502 * 109.47031 * 2 1 4 4 C 1.46500 * 119.99835 * 270.00075 * 3 2 1 5 5 C 1.50701 * 109.47178 * 270.00071 * 4 3 2 6 6 H 1.08004 * 119.99998 * 359.97438 * 5 4 3 7 7 C 1.37880 * 120.00422 * 179.97438 * 5 4 3 8 8 N 1.31516 * 119.99340 * 0.02562 * 7 5 4 9 9 Si 1.86791 * 120.00094 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.47378 * 0.02562 * 9 7 5 11 11 H 1.48505 * 109.47163 * 120.00322 * 9 7 5 12 12 H 1.48499 * 109.47271 * 239.99998 * 9 7 5 13 13 C 1.34776 * 120.00541 * 89.99859 * 3 2 1 14 14 O 1.21582 * 120.00530 * 180.02562 * 13 3 2 15 15 N 1.34778 * 119.99369 * 359.97438 * 13 3 2 16 16 C 1.40000 * 119.99567 * 185.28365 * 15 13 3 17 17 C 1.39233 * 120.87271 * 32.39851 * 16 15 13 18 18 N 1.32261 * 119.01710 * 180.02562 * 17 16 15 19 19 C 1.31800 * 120.89577 * 359.97438 * 18 17 16 20 20 C 1.50699 * 119.03941 * 179.97438 * 19 18 17 21 21 F 1.39902 * 109.46706 * 105.00612 * 20 19 18 22 22 F 1.39905 * 109.47000 * 225.00287 * 20 19 18 23 23 F 1.39891 * 109.47169 * 345.00094 * 20 19 18 24 24 N 1.31791 * 121.91780 * 0.02562 * 19 18 17 25 25 C 1.32269 * 120.89534 * 359.97438 * 24 19 18 26 26 H 1.08997 * 109.47033 * 60.00347 * 1 2 3 27 27 H 1.08993 * 109.46704 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47237 * 300.00178 * 1 2 3 29 29 H 1.08998 * 109.47237 * 239.99822 * 2 1 3 30 30 H 1.09002 * 109.47004 * 119.99162 * 2 1 3 31 31 H 1.09007 * 109.47027 * 29.99842 * 4 3 2 32 32 H 1.08996 * 109.47829 * 149.99989 * 4 3 2 33 33 H 0.96998 * 119.99095 * 179.97438 * 8 7 5 34 34 H 0.96999 * 120.00583 * 5.28576 * 15 13 3 35 35 H 1.08005 * 120.48677 * 0.02562 * 17 16 15 36 36 H 1.07997 * 120.49240 * 180.02562 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0718 -1.2688 5 6 3.6858 1.8350 -1.7038 6 1 4.3429 1.2309 -1.0958 7 6 4.1491 2.3896 -2.8781 8 7 3.3490 3.1256 -3.6182 9 14 5.9135 2.0966 -3.4169 10 1 6.6011 1.2414 -2.4164 11 1 5.9215 1.4170 -4.7373 12 1 6.6204 3.3980 -3.5259 13 6 2.2430 2.0167 1.1671 14 8 2.6478 3.1631 1.1671 15 7 2.0178 1.3815 2.3343 16 6 2.1444 2.0746 3.5441 17 6 1.8382 3.4304 3.6262 18 7 1.9715 4.0490 4.7876 19 6 2.3869 3.3996 5.8566 20 6 2.5243 4.1459 7.1586 21 9 1.4668 3.8014 8.0073 22 9 3.7385 3.8063 7.7649 23 9 2.4951 5.5226 6.9122 24 7 2.6865 2.1167 5.8198 25 6 2.5798 1.4262 4.6967 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3632 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8899 29 1 1.8934 -0.5138 -0.8899 30 1 1.8934 -0.5137 0.8901 31 1 1.5816 1.6876 -2.0284 32 1 2.0955 3.1410 -1.1386 33 1 3.6751 3.5161 -4.4440 34 1 1.7682 0.4442 2.3362 35 1 1.4969 3.9688 2.7544 36 1 2.8267 0.3751 4.6741 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603039261.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:43:17 Heat of formation + Delta-G solvation = -114.811331 kcal Electronic energy + Delta-G solvation = -26374.121123 eV Core-core repulsion = 21865.566721 eV Total energy + Delta-G solvation = -4508.554402 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.104 amu Computer time = 1.98 seconds Orbital eigenvalues (eV) -50.27222 -47.80595 -47.74977 -41.63736 -39.88899 -36.05051 -35.27715 -34.12018 -32.92307 -31.31592 -30.38247 -27.70221 -26.41497 -25.18483 -23.65780 -23.29724 -22.52667 -20.14500 -19.18839 -18.82576 -18.71047 -18.28128 -17.37480 -16.96343 -16.57985 -15.76439 -15.33518 -15.17918 -14.77271 -14.54889 -14.48769 -14.29715 -14.18000 -13.94121 -13.90348 -13.89955 -13.85864 -13.38176 -12.88725 -12.84218 -12.25047 -11.96639 -11.80859 -11.41951 -11.30460 -11.21492 -11.08435 -10.91530 -10.70228 -10.27389 -9.88407 -9.76180 -9.57132 -8.73945 -8.55470 -7.95078 -6.16897 -4.22264 0.30257 0.74263 2.09071 2.63554 3.09590 3.22447 3.26341 3.31097 3.34002 3.41691 3.55346 3.96192 4.18548 4.22742 4.35038 4.37426 4.47783 4.62666 5.00776 5.18123 5.33989 5.41902 5.48066 5.69310 5.76249 5.98993 6.24701 6.25590 6.40264 6.57810 7.07858 7.23081 7.36865 7.51224 7.78986 8.06542 8.20009 8.72078 8.87076 9.43600 10.91153 Molecular weight = 318.10amu Principal moments of inertia in cm(-1) A = 0.018546 B = 0.003085 C = 0.002847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1509.366313 B = 9072.716763 C = 9831.661350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.104 3.896 3 N -0.597 5.597 4 C 0.259 3.741 5 C -0.532 4.532 6 H 0.058 0.942 7 C 0.063 3.937 8 N -0.892 5.892 9 Si 0.899 3.101 10 H -0.274 1.274 11 H -0.283 1.283 12 H -0.282 1.282 13 C 0.695 3.305 14 O -0.562 6.562 15 N -0.681 5.681 16 C 0.123 3.877 17 C 0.148 3.852 18 N -0.453 5.453 19 C 0.190 3.810 20 C 0.552 3.448 21 F -0.167 7.167 22 F -0.163 7.163 23 F -0.156 7.156 24 N -0.456 5.456 25 C 0.112 3.888 26 H 0.065 0.935 27 H 0.063 0.937 28 H 0.050 0.950 29 H 0.091 0.909 30 H 0.058 0.942 31 H 0.038 0.962 32 H 0.047 0.953 33 H 0.264 0.736 34 H 0.410 0.590 35 H 0.196 0.804 36 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.301 -6.502 16.163 18.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.020 4.020 3 N -0.331 5.331 4 C 0.140 3.860 5 C -0.571 4.571 6 H 0.076 0.924 7 C -0.139 4.139 8 N -0.531 5.531 9 Si 0.727 3.273 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.208 1.208 13 C 0.397 3.603 14 O -0.437 6.437 15 N -0.331 5.331 16 C 0.018 3.982 17 C -0.022 4.022 18 N -0.166 5.166 19 C -0.081 4.081 20 C 0.496 3.504 21 F -0.149 7.149 22 F -0.144 7.144 23 F -0.138 7.138 24 N -0.169 5.169 25 C -0.058 4.058 26 H 0.084 0.916 27 H 0.082 0.918 28 H 0.069 0.931 29 H 0.109 0.891 30 H 0.076 0.924 31 H 0.056 0.944 32 H 0.065 0.935 33 H 0.074 0.926 34 H 0.249 0.751 35 H 0.212 0.788 36 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -5.932 -5.065 16.689 18.421 hybrid contribution 0.874 -1.108 -1.123 1.804 sum -5.058 -6.173 15.565 17.492 Atomic orbital electron populations 1.22250 0.96260 1.01795 1.02701 1.21456 0.93848 0.83930 1.02775 1.47708 1.65801 1.13520 1.06035 1.19341 0.96567 0.93563 0.76525 1.21442 0.96825 1.32375 1.06435 0.92387 1.24920 0.97950 0.94762 0.96313 1.69929 1.35662 1.33139 1.14336 0.86431 0.84435 0.78151 0.78329 1.19849 1.20888 1.20784 1.15973 0.79282 0.85044 0.79999 1.90947 1.51026 1.16519 1.85216 1.43060 1.72349 1.14676 1.02998 1.19546 0.95847 0.94996 0.87769 1.23636 0.92600 0.91015 0.94903 1.68024 1.11114 1.38940 0.98550 1.22314 1.02754 0.89203 0.93856 1.17025 0.74432 0.77028 0.81938 1.93236 1.57179 1.92057 1.72415 1.93245 1.44683 1.92145 1.84343 1.93257 1.96063 1.30258 1.94175 1.67813 1.13281 1.07027 1.28761 1.23038 0.95173 1.01233 0.86361 0.91564 0.91813 0.93075 0.89051 0.92374 0.94388 0.93486 0.92604 0.75078 0.78777 0.80050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.83 10.24 37.16 0.38 -1.45 16 2 C 0.10 1.34 5.94 -4.04 -0.02 1.32 16 3 N -0.60 -10.87 2.46 -180.80 -0.44 -11.32 16 4 C 0.26 6.12 5.16 -5.19 -0.03 6.10 16 5 C -0.53 -14.09 9.39 -34.44 -0.32 -14.41 16 6 H 0.06 1.55 7.81 -52.48 -0.41 1.14 16 7 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 8 N -0.89 -25.25 13.29 55.43 0.74 -24.51 16 9 Si 0.90 21.03 29.54 -169.99 -5.02 16.01 16 10 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 11 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 12 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 13 C 0.70 12.54 8.05 -86.92 -0.70 11.84 16 14 O -0.56 -12.56 13.62 5.29 0.07 -12.49 16 15 N -0.68 -8.62 5.25 -14.03 -0.07 -8.70 16 16 C 0.12 1.58 6.34 -83.39 -0.53 1.05 16 17 C 0.15 2.20 9.94 -17.00 -0.17 2.03 16 18 N -0.45 -6.88 9.82 -10.58 -0.10 -6.99 16 19 C 0.19 2.69 7.09 -157.19 -1.11 1.58 16 20 C 0.55 7.21 3.49 36.01 0.13 7.34 16 21 F -0.17 -2.07 17.30 2.25 0.04 -2.03 16 22 F -0.16 -2.10 17.20 2.25 0.04 -2.06 16 23 F -0.16 -2.10 16.87 2.25 0.04 -2.06 16 24 N -0.46 -5.96 10.20 -10.58 -0.11 -6.07 16 25 C 0.11 1.23 11.26 -16.99 -0.19 1.04 16 26 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.09 1.26 8.07 -51.93 -0.42 0.84 16 30 H 0.06 0.56 6.29 -51.93 -0.33 0.23 16 31 H 0.04 0.91 8.07 -51.92 -0.42 0.49 16 32 H 0.05 1.27 7.42 -51.93 -0.39 0.88 16 33 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 34 H 0.41 3.70 6.52 -40.82 -0.27 3.43 16 35 H 0.20 3.08 6.46 -52.48 -0.34 2.74 16 36 H 0.18 1.26 8.06 -52.49 -0.42 0.83 16 LS Contribution 330.64 15.07 4.98 4.98 Total: -1.00 -31.60 330.64 -5.90 -37.50 By element: Atomic # 1 Polarization: 3.06 SS G_CDS: -3.39 Total: -0.33 kcal Atomic # 6 Polarization: 20.72 SS G_CDS: -2.67 Total: 18.05 kcal Atomic # 7 Polarization: -57.58 SS G_CDS: 0.01 Total: -57.58 kcal Atomic # 8 Polarization: -12.56 SS G_CDS: 0.07 Total: -12.49 kcal Atomic # 9 Polarization: -6.26 SS G_CDS: 0.12 Total: -6.15 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -31.60 -5.90 -37.50 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603039261.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.307 kcal (2) G-P(sol) polarization free energy of solvation -31.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.98 seconds