Wall clock time and date at job start Tue Mar 31 2020 12:43:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46502 * 109.47031 * 2 1 4 4 C 1.46500 * 119.99835 * 270.00075 * 3 2 1 5 5 C 1.50701 * 109.47178 * 270.00071 * 4 3 2 6 6 H 1.08004 * 119.99998 * 359.97438 * 5 4 3 7 7 C 1.37880 * 120.00422 * 179.97438 * 5 4 3 8 8 N 1.31516 * 119.99340 * 0.02562 * 7 5 4 9 9 Si 1.86791 * 120.00094 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.47378 * 0.02562 * 9 7 5 11 11 H 1.48505 * 109.47163 * 120.00322 * 9 7 5 12 12 H 1.48499 * 109.47271 * 239.99998 * 9 7 5 13 13 C 1.34776 * 120.00541 * 89.99859 * 3 2 1 14 14 O 1.21582 * 120.00530 * 180.02562 * 13 3 2 15 15 N 1.34778 * 119.99369 * 359.97438 * 13 3 2 16 16 C 1.40000 * 119.99567 * 185.28365 * 15 13 3 17 17 C 1.39233 * 120.87271 * 32.39851 * 16 15 13 18 18 N 1.32261 * 119.01710 * 180.02562 * 17 16 15 19 19 C 1.31800 * 120.89577 * 359.97438 * 18 17 16 20 20 C 1.50699 * 119.03941 * 179.97438 * 19 18 17 21 21 F 1.39902 * 109.46706 * 105.00612 * 20 19 18 22 22 F 1.39905 * 109.47000 * 225.00287 * 20 19 18 23 23 F 1.39891 * 109.47169 * 345.00094 * 20 19 18 24 24 N 1.31791 * 121.91780 * 0.02562 * 19 18 17 25 25 C 1.32269 * 120.89534 * 359.97438 * 24 19 18 26 26 H 1.08997 * 109.47033 * 60.00347 * 1 2 3 27 27 H 1.08993 * 109.46704 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47237 * 300.00178 * 1 2 3 29 29 H 1.08998 * 109.47237 * 239.99822 * 2 1 3 30 30 H 1.09002 * 109.47004 * 119.99162 * 2 1 3 31 31 H 1.09007 * 109.47027 * 29.99842 * 4 3 2 32 32 H 1.08996 * 109.47829 * 149.99989 * 4 3 2 33 33 H 0.96998 * 119.99095 * 179.97438 * 8 7 5 34 34 H 0.96999 * 120.00583 * 5.28576 * 15 13 3 35 35 H 1.08005 * 120.48677 * 0.02562 * 17 16 15 36 36 H 1.07997 * 120.49240 * 180.02562 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0718 -1.2688 5 6 3.6858 1.8350 -1.7038 6 1 4.3429 1.2309 -1.0958 7 6 4.1491 2.3896 -2.8781 8 7 3.3490 3.1256 -3.6182 9 14 5.9135 2.0966 -3.4169 10 1 6.6011 1.2414 -2.4164 11 1 5.9215 1.4170 -4.7373 12 1 6.6204 3.3980 -3.5259 13 6 2.2430 2.0167 1.1671 14 8 2.6478 3.1631 1.1671 15 7 2.0178 1.3815 2.3343 16 6 2.1444 2.0746 3.5441 17 6 1.8382 3.4304 3.6262 18 7 1.9715 4.0490 4.7876 19 6 2.3869 3.3996 5.8566 20 6 2.5243 4.1459 7.1586 21 9 1.4668 3.8014 8.0073 22 9 3.7385 3.8063 7.7649 23 9 2.4951 5.5226 6.9122 24 7 2.6865 2.1167 5.8198 25 6 2.5798 1.4262 4.6967 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3632 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8899 29 1 1.8934 -0.5138 -0.8899 30 1 1.8934 -0.5137 0.8901 31 1 1.5816 1.6876 -2.0284 32 1 2.0955 3.1410 -1.1386 33 1 3.6751 3.5161 -4.4440 34 1 1.7682 0.4442 2.3362 35 1 1.4969 3.9688 2.7544 36 1 2.8267 0.3751 4.6741 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603039261.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:43:15 Heat of formation + Delta-G solvation = -135.562136 kcal Electronic energy + Delta-G solvation = -26375.020946 eV Core-core repulsion = 21865.566721 eV Total energy + Delta-G solvation = -4509.454225 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.104 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -51.30257 -48.81922 -48.79522 -42.74120 -41.21885 -37.40159 -36.61703 -35.18806 -34.86233 -32.45990 -31.66456 -29.27282 -27.73823 -26.24442 -25.19403 -24.47325 -23.82638 -21.41847 -20.22040 -20.00733 -19.73751 -19.43166 -18.63724 -18.50730 -18.13485 -16.99417 -16.70041 -16.46947 -16.14572 -15.87112 -15.58592 -15.52114 -15.20624 -15.19277 -14.93184 -14.92785 -14.88520 -14.59788 -14.46306 -13.94832 -13.73233 -13.30752 -13.10099 -12.87283 -12.72534 -12.54149 -12.50039 -12.29139 -12.19961 -11.95966 -11.69647 -11.28401 -10.71991 -10.63809 -9.94580 -9.43512 -8.22288 -6.35882 -0.77516 -0.28001 1.03738 1.37104 1.38667 1.42260 1.51421 1.87837 2.22534 2.28734 2.38115 2.42702 2.77384 3.08846 3.16439 3.19415 3.36218 3.50905 3.55341 4.05419 4.36528 4.47367 4.55807 4.58512 4.84772 4.96941 5.02959 5.15520 5.21934 5.38801 5.50183 5.53842 5.69670 5.90539 6.05086 6.45131 6.73198 6.86980 7.28895 7.44824 8.84623 Molecular weight = 318.10amu Principal moments of inertia in cm(-1) A = 0.018546 B = 0.003085 C = 0.002847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1509.366313 B = 9072.716763 C = 9831.661350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.096 3.904 3 N -0.603 5.603 4 C 0.276 3.724 5 C -0.541 4.541 6 H 0.055 0.945 7 C 0.011 3.989 8 N -0.926 5.926 9 Si 0.963 3.037 10 H -0.267 1.267 11 H -0.271 1.271 12 H -0.286 1.286 13 C 0.695 3.305 14 O -0.613 6.613 15 N -0.654 5.654 16 C 0.118 3.882 17 C 0.130 3.870 18 N -0.473 5.473 19 C 0.182 3.818 20 C 0.556 3.444 21 F -0.162 7.162 22 F -0.161 7.161 23 F -0.161 7.161 24 N -0.461 5.461 25 C 0.140 3.860 26 H 0.040 0.960 27 H 0.098 0.902 28 H 0.058 0.942 29 H 0.082 0.918 30 H 0.101 0.899 31 H 0.031 0.969 32 H 0.003 0.997 33 H 0.266 0.734 34 H 0.432 0.568 35 H 0.175 0.825 36 H 0.234 0.766 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.793 -9.367 17.567 20.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.026 4.026 3 N -0.335 5.335 4 C 0.155 3.845 5 C -0.580 4.580 6 H 0.073 0.927 7 C -0.189 4.189 8 N -0.566 5.566 9 Si 0.788 3.212 10 H -0.191 1.191 11 H -0.196 1.196 12 H -0.212 1.212 13 C 0.397 3.603 14 O -0.492 6.492 15 N -0.306 5.306 16 C 0.014 3.986 17 C -0.038 4.038 18 N -0.187 5.187 19 C -0.088 4.088 20 C 0.499 3.501 21 F -0.144 7.144 22 F -0.142 7.142 23 F -0.142 7.142 24 N -0.174 5.174 25 C -0.030 4.030 26 H 0.059 0.941 27 H 0.117 0.883 28 H 0.077 0.923 29 H 0.100 0.900 30 H 0.119 0.881 31 H 0.049 0.951 32 H 0.021 0.979 33 H 0.075 0.925 34 H 0.275 0.725 35 H 0.192 0.808 36 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -5.461 -7.996 18.132 20.556 hybrid contribution 0.672 -0.238 -1.489 1.651 sum -4.788 -8.234 16.643 19.176 Atomic orbital electron populations 1.22186 0.94386 1.03760 1.01857 1.21822 0.95362 0.80925 1.04472 1.47521 1.66115 1.15430 1.04483 1.18726 0.95280 0.91628 0.78868 1.21752 0.97984 1.31918 1.06353 0.92672 1.25769 1.01930 0.94593 0.96588 1.70040 1.37529 1.34185 1.14838 0.85439 0.79528 0.77832 0.78421 1.19123 1.19584 1.21225 1.16069 0.78757 0.84455 0.81057 1.90923 1.53169 1.18967 1.86181 1.42515 1.71591 1.15261 1.01240 1.19562 0.96412 0.94322 0.88293 1.23425 0.93681 0.92291 0.94436 1.67962 1.12058 1.39722 0.98957 1.22517 1.02604 0.89881 0.93836 1.16931 0.74597 0.76742 0.81787 1.93244 1.56948 1.91983 1.72184 1.93247 1.44591 1.92103 1.84253 1.93248 1.96096 1.30672 1.94220 1.67952 1.13587 1.06462 1.29393 1.23801 0.91995 1.02807 0.84404 0.94063 0.88332 0.92328 0.89991 0.88051 0.95080 0.97887 0.92465 0.72478 0.80796 0.75015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.10 10.24 71.98 0.74 -2.36 16 2 C 0.10 2.26 5.94 86.38 0.51 2.77 16 3 N -0.60 -21.82 2.46 -844.18 -2.07 -23.89 16 4 C 0.28 13.55 5.16 85.63 0.44 13.99 16 5 C -0.54 -29.10 9.39 25.60 0.24 -28.86 16 6 H 0.06 2.93 7.81 -2.91 -0.02 2.91 16 7 C 0.01 0.58 5.46 84.66 0.46 1.04 16 8 N -0.93 -53.70 13.29 21.45 0.28 -53.41 16 9 Si 0.96 43.22 29.54 68.60 2.03 45.25 16 10 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 11 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 12 H -0.29 -12.97 7.11 99.48 0.71 -12.26 16 13 C 0.69 24.86 8.05 179.05 1.44 26.31 16 14 O -0.61 -28.42 13.62 -3.97 -0.05 -28.48 16 15 N -0.65 -15.01 5.25 -316.58 -1.66 -16.67 16 16 C 0.12 2.80 6.34 38.31 0.24 3.04 16 17 C 0.13 3.90 9.94 84.87 0.84 4.74 16 18 N -0.47 -14.39 9.82 -187.39 -1.84 -16.23 16 19 C 0.18 4.96 7.09 138.75 0.98 5.95 16 20 C 0.56 13.98 3.49 71.24 0.25 14.22 16 21 F -0.16 -3.80 17.30 44.97 0.78 -3.02 16 22 F -0.16 -3.92 17.20 44.97 0.77 -3.15 16 23 F -0.16 -4.29 16.87 44.97 0.76 -3.53 16 24 N -0.46 -10.79 10.20 -187.39 -1.91 -12.70 16 25 C 0.14 2.54 11.26 84.87 0.96 3.50 16 26 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 27 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 28 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.08 2.12 8.07 -2.39 -0.02 2.10 16 30 H 0.10 1.49 6.29 -2.39 -0.02 1.48 16 31 H 0.03 1.55 8.07 -2.38 -0.02 1.53 16 32 H 0.00 0.17 7.42 -2.39 -0.02 0.15 16 33 H 0.27 14.55 8.31 -92.71 -0.77 13.78 16 34 H 0.43 5.92 6.52 -92.71 -0.60 5.32 16 35 H 0.18 5.90 6.46 -2.91 -0.02 5.88 16 36 H 0.23 1.75 8.06 -2.91 -0.02 1.73 16 Total: -1.00 -72.14 330.64 4.74 -67.40 By element: Atomic # 1 Polarization: 3.55 SS G_CDS: 0.55 Total: 4.10 kcal Atomic # 6 Polarization: 37.23 SS G_CDS: 7.11 Total: 44.34 kcal Atomic # 7 Polarization: -115.70 SS G_CDS: -7.20 Total: -122.90 kcal Atomic # 8 Polarization: -28.42 SS G_CDS: -0.05 Total: -28.48 kcal Atomic # 9 Polarization: -12.01 SS G_CDS: 2.31 Total: -9.70 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.25 kcal Total: -72.14 4.74 -67.40 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603039261.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.165 kcal (2) G-P(sol) polarization free energy of solvation -72.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds