Wall clock time and date at job start Tue Mar 31 2020 12:06:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86802 * 119.99776 * 2 1 4 4 H 1.48502 * 109.47132 * 270.00694 * 3 2 1 5 5 H 1.48500 * 109.46991 * 30.00458 * 3 2 1 6 6 H 1.48498 * 109.47247 * 150.00571 * 3 2 1 7 7 C 1.37874 * 120.00255 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00046 * 359.97438 * 7 2 1 9 9 C 1.50703 * 119.99861 * 179.97438 * 7 2 1 10 10 C 1.52997 * 109.47189 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.47524 * 179.97438 * 10 9 7 12 12 N 1.46500 * 109.47287 * 180.02562 * 11 10 9 13 13 C 1.34776 * 119.99624 * 180.02562 * 12 11 10 14 14 O 1.21582 * 120.00530 * 0.02562 * 13 12 11 15 15 N 1.34778 * 119.99369 * 179.97438 * 13 12 11 16 16 C 1.40000 * 119.99446 * 185.29776 * 15 13 12 17 17 C 1.39231 * 120.87129 * 32.40022 * 16 15 13 18 18 N 1.32271 * 119.01301 * 180.02562 * 17 16 15 19 19 C 1.31792 * 120.89751 * 359.97438 * 18 17 16 20 20 C 1.50699 * 119.04202 * 179.97438 * 19 18 17 21 21 F 1.39896 * 109.46914 * 105.00323 * 20 19 18 22 22 F 1.39904 * 109.47207 * 225.00349 * 20 19 18 23 23 F 1.39899 * 109.46724 * 345.00320 * 20 19 18 24 24 N 1.31802 * 121.91879 * 0.02562 * 19 18 17 25 25 C 1.32270 * 120.89229 * 359.97438 * 24 19 18 26 26 H 0.96998 * 120.00212 * 359.97438 * 1 2 3 27 27 H 1.09003 * 109.47620 * 59.99239 * 9 7 2 28 28 H 1.09002 * 109.46959 * 299.99106 * 9 7 2 29 29 H 1.09003 * 109.47163 * 59.99324 * 10 9 7 30 30 H 1.09007 * 109.47127 * 299.99815 * 10 9 7 31 31 H 1.09000 * 109.46712 * 59.99566 * 11 10 9 32 32 H 1.09000 * 109.46530 * 299.99772 * 11 10 9 33 33 H 0.97002 * 120.00013 * 359.97438 * 12 11 10 34 34 H 0.96993 * 120.00326 * 5.30001 * 15 13 12 35 35 H 1.07993 * 120.49242 * 0.02562 * 17 16 15 36 36 H 1.08003 * 120.48929 * 180.02562 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4403 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 1.4647 -2.1293 -0.0005 9 6 3.5116 -1.1939 -0.0011 10 6 4.0217 -2.6363 -0.0010 11 6 5.5517 -2.6363 -0.0022 12 7 6.0401 -4.0175 -0.0027 13 6 7.3652 -4.2636 -0.0033 14 8 8.1553 -3.3395 -0.0029 15 7 7.8145 -5.5343 -0.0032 16 6 9.1861 -5.7917 0.1081 17 6 10.0129 -4.9513 0.8489 18 7 11.3036 -5.2290 0.9291 19 6 11.8081 -6.2835 0.3205 20 6 13.2847 -6.5600 0.4394 21 9 13.4899 -7.6266 1.3211 22 9 13.8003 -6.8893 -0.8188 23 9 13.9347 -5.4208 0.9262 24 7 11.0589 -7.1029 -0.3898 25 6 9.7591 -6.8949 -0.5190 26 1 -0.4850 0.8400 0.0004 27 1 3.8754 -0.6801 0.8888 28 1 3.8746 -0.6800 -0.8912 29 1 3.6580 -3.1504 -0.8907 30 1 3.6588 -3.1500 0.8893 31 1 5.9157 -2.1221 0.8872 32 1 5.9142 -2.1228 -0.8927 33 1 5.4098 -4.7548 -0.0019 34 1 7.1876 -6.2704 -0.0804 35 1 9.6063 -4.0857 1.3505 36 1 9.1513 -7.5707 -1.1023 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603039901.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:06:04 Heat of formation + Delta-G solvation = -129.556113 kcal Electronic energy + Delta-G solvation = -25045.435931 eV Core-core repulsion = 20536.242147 eV Total energy + Delta-G solvation = -4509.193784 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.104 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -50.50247 -48.03311 -47.98169 -42.03204 -40.34910 -36.45648 -35.50630 -34.48172 -33.59380 -32.08061 -31.17642 -27.84245 -26.69998 -25.56457 -23.84963 -22.85038 -21.52234 -20.62166 -19.47889 -19.47098 -18.94217 -18.60934 -18.18106 -17.48884 -16.80955 -16.19830 -15.82926 -15.49347 -15.36187 -14.79834 -14.77788 -14.52929 -14.42930 -14.40296 -14.24962 -14.12423 -14.10342 -14.04671 -13.19077 -12.79511 -12.38741 -12.14234 -12.06403 -11.74313 -11.57473 -11.24413 -10.99658 -10.76895 -10.19182 -10.03926 -9.97463 -9.80939 -9.39645 -9.33236 -9.00613 -8.63727 -6.14355 -4.13991 -0.08241 0.39422 1.76065 2.05234 2.56758 2.96854 3.01314 3.13879 3.25113 3.33441 3.36216 3.59431 3.86040 3.96835 4.08004 4.11796 4.25943 4.36818 5.06305 5.19432 5.24462 5.28325 5.46513 5.78864 5.83053 6.00662 6.17263 6.22247 6.27106 6.50964 6.63224 7.10168 7.16404 7.23581 7.45908 7.66460 8.04086 8.40674 8.88660 9.47409 10.98662 Molecular weight = 318.10amu Principal moments of inertia in cm(-1) A = 0.038576 B = 0.001914 C = 0.001855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.666300 B =14621.849015 C =15088.396616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.067 3.933 3 Si 0.880 3.120 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.264 1.264 7 C -0.525 4.525 8 H 0.072 0.928 9 C -0.011 4.011 10 C -0.114 4.114 11 C 0.129 3.871 12 N -0.726 5.726 13 C 0.699 3.301 14 O -0.570 6.570 15 N -0.676 5.676 16 C 0.111 3.889 17 C 0.151 3.849 18 N -0.453 5.453 19 C 0.200 3.800 20 C 0.552 3.448 21 F -0.165 7.165 22 F -0.161 7.161 23 F -0.155 7.155 24 N -0.455 5.455 25 C 0.122 3.878 26 H 0.264 0.736 27 H 0.020 0.980 28 H 0.015 0.985 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.069 0.931 32 H 0.068 0.932 33 H 0.401 0.599 34 H 0.416 0.584 35 H 0.195 0.805 36 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.045 -17.420 0.472 28.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.135 4.135 3 Si 0.707 3.293 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.189 1.189 7 C -0.563 4.563 8 H 0.090 0.910 9 C -0.049 4.049 10 C -0.152 4.152 11 C 0.006 3.994 12 N -0.379 5.379 13 C 0.399 3.601 14 O -0.446 6.446 15 N -0.325 5.325 16 C 0.008 3.992 17 C -0.018 4.018 18 N -0.166 5.166 19 C -0.071 4.071 20 C 0.495 3.505 21 F -0.147 7.147 22 F -0.142 7.142 23 F -0.136 7.136 24 N -0.168 5.168 25 C -0.048 4.048 26 H 0.074 0.926 27 H 0.038 0.962 28 H 0.033 0.967 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.087 0.913 32 H 0.086 0.914 33 H 0.235 0.765 34 H 0.254 0.746 35 H 0.212 0.788 36 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 23.500 -16.549 0.564 28.748 hybrid contribution -1.152 0.314 -0.208 1.212 sum 22.348 -16.234 0.356 27.624 Atomic orbital electron populations 1.69905 1.06327 1.27066 1.50682 1.25034 0.94765 0.99287 0.94385 0.86775 0.80385 0.83501 0.78625 1.20220 1.21317 1.18881 1.21058 0.89201 0.94526 1.51473 0.91004 1.19500 0.97378 0.91193 0.96791 1.21733 0.90157 1.01351 1.01920 1.21709 0.96197 0.79045 1.02451 1.45390 1.04033 1.11046 1.77422 1.16000 0.83830 0.82060 0.78179 1.90983 1.54721 1.42422 1.56444 1.42624 1.04808 1.08620 1.76450 1.19486 0.85706 0.97872 0.96110 1.23610 0.86868 0.98794 0.92563 1.68054 1.14392 1.15687 1.18475 1.22434 0.95446 0.91367 0.97847 1.17016 0.84221 0.74744 0.74527 1.93251 1.95456 1.56826 1.69122 1.93256 1.87900 1.92477 1.40613 1.93269 1.82355 1.50189 1.87831 1.67883 1.05906 1.28316 1.14688 1.23116 0.89913 0.96328 0.95460 0.92610 0.96205 0.96659 0.91974 0.91911 0.91290 0.91383 0.76490 0.74647 0.78847 0.79734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.86 13.96 55.43 0.77 -26.09 16 2 C 0.07 1.88 5.47 -17.82 -0.10 1.78 16 3 Si 0.88 20.94 27.47 -169.99 -4.67 16.27 16 4 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.26 -6.01 6.54 56.52 0.37 -5.64 16 7 C -0.52 -14.06 9.66 -34.44 -0.33 -14.39 16 8 H 0.07 2.05 7.99 -52.49 -0.42 1.64 16 9 C -0.01 -0.23 4.04 -27.88 -0.11 -0.34 16 10 C -0.11 -1.84 5.27 -26.73 -0.14 -1.98 16 11 C 0.13 1.76 5.67 -4.04 -0.02 1.74 16 12 N -0.73 -7.32 5.56 -65.23 -0.36 -7.69 16 13 C 0.70 7.49 8.34 -86.92 -0.72 6.76 16 14 O -0.57 -8.38 14.04 5.29 0.07 -8.31 16 15 N -0.68 -4.55 5.37 -14.03 -0.08 -4.63 16 16 C 0.11 0.92 6.34 -83.39 -0.53 0.39 16 17 C 0.15 1.59 9.94 -16.99 -0.17 1.42 16 18 N -0.45 -5.27 9.82 -10.58 -0.10 -5.38 16 19 C 0.20 2.21 7.09 -157.19 -1.11 1.09 16 20 C 0.55 5.77 3.49 36.01 0.13 5.89 16 21 F -0.17 -1.67 17.30 2.25 0.04 -1.63 16 22 F -0.16 -1.68 17.20 2.25 0.04 -1.64 16 23 F -0.16 -1.69 16.87 2.25 0.04 -1.66 16 24 N -0.46 -4.46 10.20 -10.58 -0.11 -4.57 16 25 C 0.12 0.86 11.26 -16.99 -0.19 0.67 16 26 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 27 H 0.02 0.43 7.20 -51.93 -0.37 0.06 16 28 H 0.02 0.33 7.57 -51.93 -0.39 -0.07 16 29 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.06 0.99 8.14 -51.92 -0.42 0.57 16 31 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 32 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 33 H 0.40 2.82 8.49 -40.82 -0.35 2.47 16 34 H 0.42 1.18 8.84 -40.82 -0.36 0.82 16 35 H 0.19 2.13 6.46 -52.49 -0.34 1.79 16 36 H 0.19 0.56 8.06 -52.48 -0.42 0.14 16 LS Contribution 330.60 15.07 4.98 4.98 Total: -1.00 -33.09 330.60 -6.20 -39.29 By element: Atomic # 1 Polarization: 1.52 SS G_CDS: -3.51 Total: -1.99 kcal Atomic # 6 Polarization: 6.34 SS G_CDS: -3.31 Total: 3.03 kcal Atomic # 7 Polarization: -48.46 SS G_CDS: 0.12 Total: -48.34 kcal Atomic # 8 Polarization: -8.38 SS G_CDS: 0.07 Total: -8.31 kcal Atomic # 9 Polarization: -5.04 SS G_CDS: 0.12 Total: -4.93 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -4.67 Total: 16.27 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -33.09 -6.20 -39.29 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603039901.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.271 kcal (2) G-P(sol) polarization free energy of solvation -33.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds