Wall clock time and date at job start Tue Mar 31 2020 12:06:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86802 * 119.99776 * 2 1 4 4 H 1.48502 * 109.47132 * 270.00694 * 3 2 1 5 5 H 1.48500 * 109.46991 * 30.00458 * 3 2 1 6 6 H 1.48498 * 109.47247 * 150.00571 * 3 2 1 7 7 C 1.37874 * 120.00255 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00046 * 359.97438 * 7 2 1 9 9 C 1.50703 * 119.99861 * 179.97438 * 7 2 1 10 10 C 1.52997 * 109.47189 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.47524 * 179.97438 * 10 9 7 12 12 N 1.46500 * 109.47287 * 180.02562 * 11 10 9 13 13 C 1.34776 * 119.99624 * 180.02562 * 12 11 10 14 14 O 1.21582 * 120.00530 * 0.02562 * 13 12 11 15 15 N 1.34778 * 119.99369 * 179.97438 * 13 12 11 16 16 C 1.40000 * 119.99446 * 185.29776 * 15 13 12 17 17 C 1.39231 * 120.87129 * 32.40022 * 16 15 13 18 18 N 1.32271 * 119.01301 * 180.02562 * 17 16 15 19 19 C 1.31792 * 120.89751 * 359.97438 * 18 17 16 20 20 C 1.50699 * 119.04202 * 179.97438 * 19 18 17 21 21 F 1.39896 * 109.46914 * 105.00323 * 20 19 18 22 22 F 1.39904 * 109.47207 * 225.00349 * 20 19 18 23 23 F 1.39899 * 109.46724 * 345.00320 * 20 19 18 24 24 N 1.31802 * 121.91879 * 0.02562 * 19 18 17 25 25 C 1.32270 * 120.89229 * 359.97438 * 24 19 18 26 26 H 0.96998 * 120.00212 * 359.97438 * 1 2 3 27 27 H 1.09003 * 109.47620 * 59.99239 * 9 7 2 28 28 H 1.09002 * 109.46959 * 299.99106 * 9 7 2 29 29 H 1.09003 * 109.47163 * 59.99324 * 10 9 7 30 30 H 1.09007 * 109.47127 * 299.99815 * 10 9 7 31 31 H 1.09000 * 109.46712 * 59.99566 * 11 10 9 32 32 H 1.09000 * 109.46530 * 299.99772 * 11 10 9 33 33 H 0.97002 * 120.00013 * 359.97438 * 12 11 10 34 34 H 0.96993 * 120.00326 * 5.30001 * 15 13 12 35 35 H 1.07993 * 120.49242 * 0.02562 * 17 16 15 36 36 H 1.08003 * 120.48929 * 180.02562 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4403 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 1.4647 -2.1293 -0.0005 9 6 3.5116 -1.1939 -0.0011 10 6 4.0217 -2.6363 -0.0010 11 6 5.5517 -2.6363 -0.0022 12 7 6.0401 -4.0175 -0.0027 13 6 7.3652 -4.2636 -0.0033 14 8 8.1553 -3.3395 -0.0029 15 7 7.8145 -5.5343 -0.0032 16 6 9.1861 -5.7917 0.1081 17 6 10.0129 -4.9513 0.8489 18 7 11.3036 -5.2290 0.9291 19 6 11.8081 -6.2835 0.3205 20 6 13.2847 -6.5600 0.4394 21 9 13.4899 -7.6266 1.3211 22 9 13.8003 -6.8893 -0.8188 23 9 13.9347 -5.4208 0.9262 24 7 11.0589 -7.1029 -0.3898 25 6 9.7591 -6.8949 -0.5190 26 1 -0.4850 0.8400 0.0004 27 1 3.8754 -0.6801 0.8888 28 1 3.8746 -0.6800 -0.8912 29 1 3.6580 -3.1504 -0.8907 30 1 3.6588 -3.1500 0.8893 31 1 5.9157 -2.1221 0.8872 32 1 5.9142 -2.1228 -0.8927 33 1 5.4098 -4.7548 -0.0019 34 1 7.1876 -6.2704 -0.0804 35 1 9.6063 -4.0857 1.3505 36 1 9.1513 -7.5707 -1.1023 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603039901.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:06:03 Heat of formation + Delta-G solvation = -153.824150 kcal Electronic energy + Delta-G solvation = -25046.488272 eV Core-core repulsion = 20536.242147 eV Total energy + Delta-G solvation = -4510.246125 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.104 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -51.31145 -48.83352 -48.80435 -42.76019 -41.19173 -37.44651 -36.48522 -35.28970 -35.15608 -33.50966 -32.24951 -29.16037 -27.75261 -26.27307 -24.97713 -24.01504 -22.41562 -22.05211 -20.33762 -20.22919 -19.74725 -19.42323 -19.14488 -18.66420 -18.24254 -17.03686 -16.68359 -16.47940 -16.31667 -16.01600 -15.69214 -15.59383 -15.50483 -15.27194 -15.21640 -14.94267 -14.93869 -14.89660 -14.76399 -13.96112 -13.82681 -13.71243 -12.88321 -12.77347 -12.70268 -12.52000 -12.33591 -11.95924 -11.78760 -11.57503 -11.50828 -11.30406 -10.75235 -10.74622 -10.31010 -9.73900 -8.27996 -6.31586 -0.81659 -0.28106 0.99946 1.27640 1.38262 1.40526 1.51213 1.74841 2.22356 2.23801 2.37372 2.41113 2.85625 3.08282 3.17216 3.21498 3.35060 3.47938 3.53294 4.08990 4.24677 4.49553 4.52937 4.54152 4.89239 4.92443 5.06289 5.11393 5.30979 5.49070 5.50927 5.59309 5.64951 5.70825 6.28843 6.43974 6.76522 6.78638 7.24234 7.33455 8.88158 Molecular weight = 318.10amu Principal moments of inertia in cm(-1) A = 0.038576 B = 0.001914 C = 0.001855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.666300 B =14621.849015 C =15088.396616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.003 3.997 3 Si 0.946 3.054 4 H -0.269 1.269 5 H -0.288 1.288 6 H -0.245 1.245 7 C -0.528 4.528 8 H 0.039 0.961 9 C -0.014 4.014 10 C -0.100 4.100 11 C 0.143 3.857 12 N -0.714 5.714 13 C 0.701 3.299 14 O -0.610 6.610 15 N -0.652 5.652 16 C 0.116 3.884 17 C 0.132 3.868 18 N -0.475 5.475 19 C 0.187 3.813 20 C 0.553 3.447 21 F -0.164 7.164 22 F -0.162 7.162 23 F -0.161 7.161 24 N -0.465 5.465 25 C 0.141 3.859 26 H 0.265 0.735 27 H 0.022 0.978 28 H 0.020 0.980 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.062 0.938 32 H 0.061 0.939 33 H 0.418 0.582 34 H 0.439 0.561 35 H 0.184 0.816 36 H 0.233 0.767 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.015 -18.520 -0.099 29.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.194 4.194 3 Si 0.770 3.230 4 H -0.194 1.194 5 H -0.214 1.214 6 H -0.169 1.169 7 C -0.566 4.566 8 H 0.057 0.943 9 C -0.052 4.052 10 C -0.138 4.138 11 C 0.019 3.981 12 N -0.369 5.369 13 C 0.401 3.599 14 O -0.489 6.489 15 N -0.302 5.302 16 C 0.013 3.987 17 C -0.036 4.036 18 N -0.188 5.188 19 C -0.084 4.084 20 C 0.497 3.503 21 F -0.146 7.146 22 F -0.143 7.143 23 F -0.142 7.142 24 N -0.179 5.179 25 C -0.029 4.029 26 H 0.074 0.926 27 H 0.040 0.960 28 H 0.038 0.962 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.081 0.919 32 H 0.079 0.921 33 H 0.256 0.744 34 H 0.281 0.719 35 H 0.200 0.800 36 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges 24.463 -17.719 -0.001 30.206 hybrid contribution -1.516 0.549 -0.040 1.613 sum 22.947 -17.170 -0.041 28.659 Atomic orbital electron populations 1.70057 1.08233 1.28050 1.52829 1.25991 0.95569 1.03449 0.94406 0.85723 0.79615 0.78617 0.79092 1.19405 1.21409 1.16851 1.21482 0.92031 0.93170 1.49949 0.94268 1.19480 0.93917 0.94922 0.96904 1.21481 0.91922 0.97953 1.02482 1.21272 0.94084 0.80830 1.01892 1.45012 1.04343 1.10299 1.77251 1.16031 0.83413 0.82689 0.77720 1.90977 1.55703 1.44136 1.58083 1.42253 1.04666 1.08009 1.75286 1.19467 0.85869 0.97753 0.95606 1.23541 0.87085 0.99347 0.93633 1.67978 1.15156 1.16372 1.19344 1.22456 0.95656 0.91718 0.98573 1.17010 0.84311 0.74570 0.74456 1.93247 1.95473 1.56744 1.69102 1.93249 1.87935 1.92467 1.40630 1.93252 1.82516 1.50548 1.87918 1.67968 1.07010 1.28100 1.14774 1.23847 0.89182 0.95800 0.94049 0.92618 0.96013 0.96174 0.91437 0.91425 0.91933 0.92081 0.74432 0.71930 0.79955 0.75085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.83 13.96 21.45 0.30 -57.53 16 2 C 0.00 0.15 5.47 84.65 0.46 0.61 16 3 Si 0.95 42.77 27.47 68.60 1.88 44.65 16 4 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 5 H -0.29 -12.97 7.11 99.48 0.71 -12.26 16 6 H -0.25 -10.23 6.54 99.48 0.65 -9.57 16 7 C -0.53 -28.41 9.66 25.60 0.25 -28.16 16 8 H 0.04 2.29 7.99 -2.91 -0.02 2.27 16 9 C -0.01 -0.59 4.04 29.85 0.12 -0.47 16 10 C -0.10 -3.07 5.27 30.59 0.16 -2.91 16 11 C 0.14 3.61 5.67 86.38 0.49 4.10 16 12 N -0.71 -12.41 5.56 -478.54 -2.66 -15.08 16 13 C 0.70 13.31 8.34 179.05 1.49 14.80 16 14 O -0.61 -17.17 14.04 -3.97 -0.06 -17.23 16 15 N -0.65 -6.63 5.37 -316.58 -1.70 -8.34 16 16 C 0.12 1.62 6.34 38.31 0.24 1.86 16 17 C 0.13 2.69 9.94 84.87 0.84 3.53 16 18 N -0.47 -10.92 9.82 -187.39 -1.84 -12.76 16 19 C 0.19 3.96 7.09 138.75 0.98 4.94 16 20 C 0.55 11.35 3.49 71.24 0.25 11.59 16 21 F -0.16 -3.24 17.30 44.97 0.78 -2.46 16 22 F -0.16 -3.26 17.20 44.97 0.77 -2.49 16 23 F -0.16 -3.53 16.87 44.97 0.76 -2.78 16 24 N -0.47 -8.11 10.20 -187.38 -1.91 -10.02 16 25 C 0.14 1.51 11.26 84.87 0.96 2.46 16 26 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 27 H 0.02 0.90 7.20 -2.39 -0.02 0.88 16 28 H 0.02 0.82 7.57 -2.39 -0.02 0.80 16 29 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 30 H 0.07 2.00 8.14 -2.38 -0.02 1.98 16 31 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 32 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 33 H 0.42 4.41 8.49 -92.71 -0.79 3.62 16 34 H 0.44 0.53 8.84 -92.71 -0.82 -0.29 16 35 H 0.18 4.06 6.46 -2.91 -0.02 4.04 16 36 H 0.23 0.13 8.06 -2.91 -0.02 0.11 16 Total: -1.00 -73.57 330.60 2.08 -71.49 By element: Atomic # 1 Polarization: 0.65 SS G_CDS: -0.49 Total: 0.16 kcal Atomic # 6 Polarization: 6.12 SS G_CDS: 6.25 Total: 12.37 kcal Atomic # 7 Polarization: -95.91 SS G_CDS: -7.82 Total: -103.72 kcal Atomic # 8 Polarization: -17.17 SS G_CDS: -0.06 Total: -17.23 kcal Atomic # 9 Polarization: -10.03 SS G_CDS: 2.31 Total: -7.72 kcal Atomic # 14 Polarization: 42.77 SS G_CDS: 1.88 Total: 44.65 kcal Total: -73.57 2.08 -71.49 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603039901.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.332 kcal (2) G-P(sol) polarization free energy of solvation -73.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds