Wall clock time and date at job start Tue Mar 31 2020 12:02:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86805 * 120.00088 * 2 1 4 4 H 1.48504 * 109.47163 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47243 * 300.00147 * 3 2 1 6 6 H 1.48505 * 109.47136 * 60.00298 * 3 2 1 7 7 C 1.37875 * 120.00114 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00383 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00092 * 0.02562 * 7 2 1 10 10 C 1.52994 * 109.47550 * 179.97438 * 9 7 2 11 11 S 1.81403 * 109.47200 * 180.02562 * 10 9 7 12 12 C 1.81401 * 103.00035 * 179.97438 * 11 10 9 13 13 C 1.52998 * 109.47572 * 179.97438 * 12 11 10 14 14 C 1.52997 * 109.47490 * 180.02562 * 13 12 11 15 15 C 1.50693 * 109.47229 * 180.02562 * 14 13 12 16 16 C 1.38233 * 120.00207 * 89.99423 * 15 14 13 17 17 C 1.38234 * 120.00037 * 179.72405 * 16 15 14 18 18 C 1.38234 * 120.00240 * 0.26327 * 17 16 15 19 19 C 1.50700 * 120.00260 * 179.97438 * 18 17 16 20 20 F 1.39904 * 109.46998 * 89.99804 * 19 18 17 21 21 F 1.39906 * 109.47073 * 209.99959 * 19 18 17 22 22 F 1.39899 * 109.47068 * 330.00293 * 19 18 17 23 23 C 1.38238 * 119.99693 * 0.02562 * 18 17 16 24 24 C 1.38234 * 120.00047 * 359.95697 * 23 18 17 25 25 H 0.97005 * 119.99848 * 359.97438 * 1 2 3 26 26 H 1.09005 * 109.47258 * 59.99730 * 9 7 2 27 27 H 1.08996 * 109.47193 * 299.99989 * 9 7 2 28 28 H 1.08998 * 109.47365 * 59.99856 * 10 9 7 29 29 H 1.09006 * 109.46780 * 299.99672 * 10 9 7 30 30 H 1.08999 * 109.47367 * 59.99328 * 12 11 10 31 31 H 1.09006 * 109.47186 * 299.99924 * 12 11 10 32 32 H 1.09004 * 109.46861 * 59.99586 * 13 12 11 33 33 H 1.09006 * 109.46881 * 300.00206 * 13 12 11 34 34 H 1.09000 * 109.47015 * 60.00054 * 14 13 12 35 35 H 1.09001 * 109.46743 * 299.99806 * 14 13 12 36 36 H 1.08002 * 120.00157 * 0.02562 * 16 15 14 37 37 H 1.07999 * 120.00009 * 180.28389 * 17 16 15 38 38 H 1.08001 * 119.99658 * 179.97438 * 23 18 17 39 39 H 1.07999 * 119.99990 * 180.02562 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8904 2.3965 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 6 2.2452 -3.6620 -0.0027 11 16 1.3381 -5.2330 -0.0049 12 6 2.6648 -6.4702 -0.0067 13 6 2.0540 -7.8730 -0.0080 14 6 3.1730 -8.9165 -0.0089 15 6 2.5714 -10.2981 -0.0108 16 6 2.2958 -10.9303 -1.2088 17 6 1.7492 -12.2000 -1.2105 18 6 1.4732 -12.8354 -0.0143 19 6 0.8768 -14.2194 -0.0162 20 9 1.9037 -15.1696 -0.0145 21 9 0.0843 -14.3872 1.1245 22 9 0.0891 -14.3861 -1.1602 23 6 1.7433 -12.2008 1.1838 24 6 2.2902 -10.9312 1.1855 25 1 -0.4850 0.8401 0.0004 26 1 0.6246 -2.5563 -0.8920 27 1 0.6240 -2.5575 0.8880 28 1 2.8719 -3.6051 0.8873 29 1 2.8718 -3.6035 -0.8928 30 1 3.2811 -6.3434 0.8833 31 1 3.2809 -6.3410 -0.8966 32 1 1.4375 -8.0000 -0.8979 33 1 1.4382 -8.0020 0.8821 34 1 3.7891 -8.7893 0.8812 35 1 3.7891 -8.7876 -0.8988 36 1 2.5120 -10.4343 -2.1435 37 1 1.5382 -12.6958 -2.1465 38 1 1.5273 -12.6970 2.1184 39 1 2.5016 -10.4356 2.1214 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000616303659.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:02:41 Heat of formation + Delta-G solvation = -160.571305 kcal Electronic energy + Delta-G solvation = -22267.661438 eV Core-core repulsion = 18271.123198 eV Total energy + Delta-G solvation = -3996.538240 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 318.096 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -50.51684 -48.03277 -47.98295 -39.99192 -35.64145 -33.70026 -32.12240 -31.54312 -30.87821 -28.05809 -25.44804 -24.95164 -23.38126 -22.49589 -21.31872 -20.76472 -18.88551 -18.82803 -18.72981 -16.53511 -16.32152 -16.06974 -15.37725 -15.07335 -15.05686 -14.83927 -14.69360 -14.52304 -14.44376 -14.25005 -14.14596 -14.10923 -13.85811 -13.65638 -13.37921 -13.00703 -12.52926 -12.52622 -12.08610 -11.79115 -11.65476 -11.39619 -11.32032 -11.07336 -10.92303 -10.56518 -10.21449 -9.68304 -9.54819 -9.49708 -9.32874 -9.05998 -8.44363 -7.17123 -6.07894 -4.12545 0.48061 0.84077 2.16451 2.29212 3.04723 3.22828 3.26646 3.34443 3.34560 3.37944 3.64928 4.05408 4.28415 4.33055 4.40046 4.41632 4.73732 4.86492 4.96056 4.99183 5.05919 5.23331 5.27727 5.28549 5.48810 5.50394 5.61788 5.73711 5.77298 5.83517 5.97329 6.06984 6.13952 6.16158 6.34196 6.71039 7.55124 7.63603 7.88537 8.25642 8.92740 9.51495 11.02925 Molecular weight = 318.10amu Principal moments of inertia in cm(-1) A = 0.042649 B = 0.001629 C = 0.001613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 656.359197 B =17187.993864 C =17353.996374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.059 3.941 3 Si 0.897 3.103 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.521 4.521 8 H 0.058 0.942 9 C 0.036 3.964 10 C -0.057 4.057 11 S -0.292 6.292 12 C -0.090 4.090 13 C -0.095 4.095 14 C -0.084 4.084 15 C -0.043 4.043 16 C -0.118 4.118 17 C -0.068 4.068 18 C -0.192 4.192 19 C 0.509 3.491 20 F -0.178 7.178 21 F -0.178 7.178 22 F -0.178 7.178 23 C -0.068 4.068 24 C -0.118 4.118 25 H 0.262 0.738 26 H 0.026 0.974 27 H 0.026 0.974 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.080 0.920 35 H 0.079 0.921 36 H 0.136 0.864 37 H 0.135 0.865 38 H 0.135 0.865 39 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.822 -29.329 -0.031 29.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.143 4.143 3 Si 0.724 3.276 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.561 4.561 8 H 0.076 0.924 9 C -0.002 4.002 10 C -0.204 4.204 11 S -0.064 6.064 12 C -0.238 4.238 13 C -0.133 4.133 14 C -0.123 4.123 15 C -0.043 4.043 16 C -0.136 4.136 17 C -0.086 4.086 18 C -0.194 4.194 19 C 0.455 3.545 20 F -0.160 7.160 21 F -0.159 7.159 22 F -0.159 7.159 23 C -0.086 4.086 24 C -0.136 4.136 25 H 0.072 0.928 26 H 0.045 0.955 27 H 0.045 0.955 28 H 0.086 0.914 29 H 0.085 0.915 30 H 0.094 0.906 31 H 0.094 0.906 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.098 0.902 35 H 0.098 0.902 36 H 0.154 0.846 37 H 0.153 0.847 38 H 0.153 0.847 39 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 4.557 -29.423 -0.031 29.774 hybrid contribution 1.585 0.865 -0.001 1.806 sum 6.142 -28.558 -0.032 29.211 Atomic orbital electron populations 1.69981 1.06076 1.26767 1.50046 1.25020 0.94904 0.99336 0.95058 0.86465 0.79980 0.83430 0.77691 1.19709 1.20885 1.20879 1.21136 0.93027 0.90284 1.51682 0.92418 1.18913 0.93427 0.89312 0.98557 1.23664 1.01296 0.92450 1.03036 1.86968 1.17653 1.03703 1.98084 1.23275 0.99804 0.96342 1.04391 1.21287 0.97236 0.90953 1.03856 1.20758 0.97883 0.89747 1.03878 1.20205 0.95136 0.95881 0.93055 1.21108 0.99576 0.94403 0.98471 1.20939 0.95795 0.95033 0.96832 1.19943 1.08945 0.93829 0.96655 1.18331 0.76079 0.86566 0.73559 1.93225 1.59173 1.67425 1.96155 1.93195 1.75206 1.96250 1.51244 1.93193 1.75464 1.96259 1.50978 1.20941 0.95810 0.95042 0.96809 1.21108 0.99555 0.94398 0.98495 0.92818 0.95538 0.95527 0.91446 0.91452 0.90570 0.90564 0.90759 0.90763 0.90183 0.90194 0.84619 0.84718 0.84717 0.84618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.57 13.29 55.43 0.74 -25.83 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.90 21.27 29.54 -169.99 -5.02 16.25 16 4 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 5 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 6 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.52 -14.53 9.11 -34.44 -0.31 -14.85 16 8 H 0.06 1.54 7.74 -52.48 -0.41 1.14 16 9 C 0.04 0.95 4.98 -27.89 -0.14 0.81 16 10 C -0.06 -1.17 5.88 37.15 0.22 -0.95 16 11 S -0.29 -5.24 21.74 -107.50 -2.34 -7.58 16 12 C -0.09 -1.11 5.94 37.16 0.22 -0.89 16 13 C -0.09 -0.94 5.20 -26.73 -0.14 -1.08 16 14 C -0.08 -0.61 5.34 -27.89 -0.15 -0.76 16 15 C -0.04 -0.32 5.13 -104.63 -0.54 -0.86 16 16 C -0.12 -0.86 9.70 -39.58 -0.38 -1.25 16 17 C -0.07 -0.51 9.40 -39.58 -0.37 -0.89 16 18 C -0.19 -1.59 5.45 -104.62 -0.57 -2.16 16 19 C 0.51 4.36 3.36 36.01 0.12 4.48 16 20 F -0.18 -1.60 17.30 2.25 0.04 -1.56 16 21 F -0.18 -1.59 16.46 2.25 0.04 -1.56 16 22 F -0.18 -1.59 16.46 2.25 0.04 -1.56 16 23 C -0.07 -0.52 9.40 -39.58 -0.37 -0.89 16 24 C -0.12 -0.86 9.70 -39.58 -0.38 -1.25 16 25 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 26 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 27 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 29 H 0.07 1.33 8.14 -51.92 -0.42 0.91 16 30 H 0.08 0.88 8.14 -51.92 -0.42 0.46 16 31 H 0.08 0.89 8.14 -51.92 -0.42 0.46 16 32 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.08 0.52 8.09 -51.93 -0.42 0.10 16 35 H 0.08 0.52 8.08 -51.93 -0.42 0.10 16 36 H 0.14 0.78 8.06 -52.49 -0.42 0.36 16 37 H 0.13 0.82 7.60 -52.49 -0.40 0.42 16 38 H 0.13 0.82 7.60 -52.49 -0.40 0.42 16 39 H 0.14 0.78 8.06 -52.49 -0.42 0.36 16 LS Contribution 358.86 15.07 5.41 5.41 Total: -1.00 -30.36 358.86 -9.40 -39.77 By element: Atomic # 1 Polarization: 1.02 SS G_CDS: -5.41 Total: -4.39 kcal Atomic # 6 Polarization: -16.06 SS G_CDS: -2.90 Total: -18.95 kcal Atomic # 7 Polarization: -26.57 SS G_CDS: 0.74 Total: -25.83 kcal Atomic # 9 Polarization: -4.79 SS G_CDS: 0.11 Total: -4.68 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Atomic # 16 Polarization: -5.24 SS G_CDS: -2.34 Total: -7.58 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -30.36 -9.40 -39.77 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000616303659.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.803 kcal (2) G-P(sol) polarization free energy of solvation -30.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds