Wall clock time and date at job start Tue Mar 31 2020 12:02:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86805 * 120.00088 * 2 1 4 4 H 1.48504 * 109.47163 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47243 * 300.00147 * 3 2 1 6 6 H 1.48505 * 109.47136 * 60.00298 * 3 2 1 7 7 C 1.37875 * 120.00114 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00383 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00092 * 0.02562 * 7 2 1 10 10 C 1.52994 * 109.47550 * 179.97438 * 9 7 2 11 11 S 1.81403 * 109.47200 * 180.02562 * 10 9 7 12 12 C 1.81401 * 103.00035 * 179.97438 * 11 10 9 13 13 C 1.52998 * 109.47572 * 179.97438 * 12 11 10 14 14 C 1.52997 * 109.47490 * 180.02562 * 13 12 11 15 15 C 1.50693 * 109.47229 * 180.02562 * 14 13 12 16 16 C 1.38233 * 120.00207 * 89.99423 * 15 14 13 17 17 C 1.38234 * 120.00037 * 179.72405 * 16 15 14 18 18 C 1.38234 * 120.00240 * 0.26327 * 17 16 15 19 19 C 1.50700 * 120.00260 * 179.97438 * 18 17 16 20 20 F 1.39904 * 109.46998 * 89.99804 * 19 18 17 21 21 F 1.39906 * 109.47073 * 209.99959 * 19 18 17 22 22 F 1.39899 * 109.47068 * 330.00293 * 19 18 17 23 23 C 1.38238 * 119.99693 * 0.02562 * 18 17 16 24 24 C 1.38234 * 120.00047 * 359.95697 * 23 18 17 25 25 H 0.97005 * 119.99848 * 359.97438 * 1 2 3 26 26 H 1.09005 * 109.47258 * 59.99730 * 9 7 2 27 27 H 1.08996 * 109.47193 * 299.99989 * 9 7 2 28 28 H 1.08998 * 109.47365 * 59.99856 * 10 9 7 29 29 H 1.09006 * 109.46780 * 299.99672 * 10 9 7 30 30 H 1.08999 * 109.47367 * 59.99328 * 12 11 10 31 31 H 1.09006 * 109.47186 * 299.99924 * 12 11 10 32 32 H 1.09004 * 109.46861 * 59.99586 * 13 12 11 33 33 H 1.09006 * 109.46881 * 300.00206 * 13 12 11 34 34 H 1.09000 * 109.47015 * 60.00054 * 14 13 12 35 35 H 1.09001 * 109.46743 * 299.99806 * 14 13 12 36 36 H 1.08002 * 120.00157 * 0.02562 * 16 15 14 37 37 H 1.07999 * 120.00009 * 180.28389 * 17 16 15 38 38 H 1.08001 * 119.99658 * 179.97438 * 23 18 17 39 39 H 1.07999 * 119.99990 * 180.02562 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8904 2.3965 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 6 2.2452 -3.6620 -0.0027 11 16 1.3381 -5.2330 -0.0049 12 6 2.6648 -6.4702 -0.0067 13 6 2.0540 -7.8730 -0.0080 14 6 3.1730 -8.9165 -0.0089 15 6 2.5714 -10.2981 -0.0108 16 6 2.2958 -10.9303 -1.2088 17 6 1.7492 -12.2000 -1.2105 18 6 1.4732 -12.8354 -0.0143 19 6 0.8768 -14.2194 -0.0162 20 9 1.9037 -15.1696 -0.0145 21 9 0.0843 -14.3872 1.1245 22 9 0.0891 -14.3861 -1.1602 23 6 1.7433 -12.2008 1.1838 24 6 2.2902 -10.9312 1.1855 25 1 -0.4850 0.8401 0.0004 26 1 0.6246 -2.5563 -0.8920 27 1 0.6240 -2.5575 0.8880 28 1 2.8719 -3.6051 0.8873 29 1 2.8718 -3.6035 -0.8928 30 1 3.2811 -6.3434 0.8833 31 1 3.2809 -6.3410 -0.8966 32 1 1.4375 -8.0000 -0.8979 33 1 1.4382 -8.0020 0.8821 34 1 3.7891 -8.7893 0.8812 35 1 3.7891 -8.7876 -0.8988 36 1 2.5120 -10.4343 -2.1435 37 1 1.5382 -12.6958 -2.1465 38 1 1.5273 -12.6970 2.1184 39 1 2.5016 -10.4356 2.1214 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000616303659.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:02:40 Heat of formation + Delta-G solvation = -173.535727 kcal Electronic energy + Delta-G solvation = -22268.223618 eV Core-core repulsion = 18271.123198 eV Total energy + Delta-G solvation = -3997.100420 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 318.096 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -51.20348 -48.72552 -48.67448 -40.54141 -36.34752 -35.77151 -32.90054 -32.82918 -32.07554 -28.78805 -27.34832 -25.79208 -23.92178 -23.60659 -22.60699 -21.72797 -19.54560 -19.46576 -19.40728 -18.67270 -17.25956 -16.74080 -16.52790 -16.35912 -15.94777 -15.70853 -15.51640 -15.46580 -15.24855 -15.14571 -15.13368 -14.91771 -14.83901 -14.58490 -14.37703 -13.96679 -13.78743 -13.45568 -13.33089 -13.01864 -12.92962 -12.66319 -12.33037 -12.26708 -12.13279 -12.04278 -11.65293 -11.62262 -11.17220 -10.76918 -10.61814 -10.03648 -9.96269 -8.61524 -8.23402 -6.37084 -0.10365 0.30274 0.84251 1.41513 1.41719 1.55242 1.63937 1.83709 2.40390 2.47696 2.70672 2.99849 3.09930 3.39240 3.64184 3.79304 3.91094 4.00875 4.23417 4.27630 4.32642 4.33717 4.37546 4.42126 4.58586 4.66297 4.70307 4.88961 4.92315 4.94230 5.10978 5.19493 5.21821 5.31380 5.38477 5.49955 5.57141 5.73908 5.81301 6.10940 6.77854 7.32643 8.88581 Molecular weight = 318.10amu Principal moments of inertia in cm(-1) A = 0.042649 B = 0.001629 C = 0.001613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 656.359197 B =17187.993864 C =17353.996374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.001 4.001 3 Si 0.973 3.027 4 H -0.258 1.258 5 H -0.278 1.278 6 H -0.278 1.278 7 C -0.542 4.542 8 H 0.068 0.932 9 C 0.042 3.958 10 C -0.045 4.045 11 S -0.335 6.335 12 C -0.070 4.070 13 C -0.088 4.088 14 C -0.073 4.073 15 C -0.050 4.050 16 C -0.122 4.122 17 C -0.076 4.076 18 C -0.204 4.204 19 C 0.510 3.490 20 F -0.182 7.182 21 F -0.181 7.181 22 F -0.181 7.181 23 C -0.076 4.076 24 C -0.122 4.122 25 H 0.265 0.735 26 H -0.005 1.005 27 H -0.005 1.005 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.093 0.907 35 H 0.093 0.907 36 H 0.151 0.849 37 H 0.145 0.855 38 H 0.145 0.855 39 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.944 -29.687 -0.032 30.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.199 4.199 3 Si 0.797 3.203 4 H -0.182 1.182 5 H -0.204 1.204 6 H -0.204 1.204 7 C -0.581 4.581 8 H 0.086 0.914 9 C 0.004 3.996 10 C -0.193 4.193 11 S -0.107 6.107 12 C -0.218 4.218 13 C -0.127 4.127 14 C -0.112 4.112 15 C -0.050 4.050 16 C -0.139 4.139 17 C -0.094 4.094 18 C -0.205 4.205 19 C 0.456 3.544 20 F -0.163 7.163 21 F -0.163 7.163 22 F -0.163 7.163 23 C -0.094 4.094 24 C -0.139 4.139 25 H 0.074 0.926 26 H 0.013 0.987 27 H 0.013 0.987 28 H 0.094 0.906 29 H 0.094 0.906 30 H 0.109 0.891 31 H 0.109 0.891 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.112 0.888 35 H 0.112 0.888 36 H 0.169 0.831 37 H 0.163 0.837 38 H 0.163 0.837 39 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 6.689 -29.788 -0.033 30.529 hybrid contribution 0.892 0.840 -0.001 1.225 sum 7.580 -28.948 -0.033 29.924 Atomic orbital electron populations 1.70124 1.08009 1.27984 1.51064 1.26049 0.95804 1.03633 0.94405 0.85282 0.79087 0.78163 0.77785 1.18172 1.20370 1.20356 1.21595 0.93739 0.91384 1.51391 0.91371 1.18695 0.93764 0.91650 0.95484 1.23276 0.99913 0.92338 1.03814 1.87069 1.21073 1.04315 1.98225 1.23404 0.97637 0.94940 1.05836 1.21230 0.98028 0.90170 1.03286 1.20671 0.96880 0.88366 1.05282 1.20308 0.95379 0.96102 0.93258 1.21345 0.99100 0.94294 0.99189 1.21138 0.95814 0.95360 0.97112 1.20043 1.09496 0.93631 0.97333 1.18407 0.75906 0.86827 0.73280 1.93215 1.59296 1.67670 1.96157 1.93183 1.75338 1.96299 1.51448 1.93182 1.75594 1.96308 1.51183 1.21139 0.95833 0.95369 0.97086 1.21345 0.99080 0.94290 0.99215 0.92590 0.98672 0.98660 0.90563 0.90572 0.89096 0.89093 0.91420 0.91421 0.88829 0.88839 0.83083 0.83707 0.83708 0.83088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.89 13.29 21.45 0.28 -56.60 16 2 C 0.00 -0.03 5.46 84.66 0.46 0.43 16 3 Si 0.97 43.49 29.54 68.60 2.03 45.52 16 4 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16 5 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 6 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 7 C -0.54 -30.46 9.11 25.60 0.23 -30.22 16 8 H 0.07 3.60 7.74 -2.91 -0.02 3.57 16 9 C 0.04 2.27 4.98 29.85 0.15 2.42 16 10 C -0.05 -1.87 5.88 71.98 0.42 -1.45 16 11 S -0.33 -11.88 21.74 -56.49 -1.23 -13.10 16 12 C -0.07 -1.55 5.94 71.98 0.43 -1.13 16 13 C -0.09 -1.54 5.20 30.59 0.16 -1.38 16 14 C -0.07 -0.83 5.34 29.84 0.16 -0.67 16 15 C -0.05 -0.64 5.13 -19.87 -0.10 -0.75 16 16 C -0.12 -1.53 9.70 22.27 0.22 -1.32 16 17 C -0.08 -1.05 9.40 22.27 0.21 -0.84 16 18 C -0.20 -3.15 5.45 -19.86 -0.11 -3.26 16 19 C 0.51 8.43 3.36 71.24 0.24 8.67 16 20 F -0.18 -3.17 17.30 44.97 0.78 -2.39 16 21 F -0.18 -3.16 16.46 44.97 0.74 -2.42 16 22 F -0.18 -3.16 16.46 44.97 0.74 -2.42 16 23 C -0.08 -1.05 9.40 22.27 0.21 -0.84 16 24 C -0.12 -1.53 9.70 22.27 0.22 -1.32 16 25 H 0.27 15.10 8.31 -92.70 -0.77 14.33 16 26 H -0.01 -0.30 8.14 -2.38 -0.02 -0.32 16 27 H 0.00 -0.29 8.14 -2.39 -0.02 -0.31 16 28 H 0.08 2.96 8.14 -2.39 -0.02 2.94 16 29 H 0.08 2.95 8.14 -2.39 -0.02 2.93 16 30 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 31 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 32 H 0.07 1.29 8.14 -2.38 -0.02 1.27 16 33 H 0.07 1.29 8.14 -2.38 -0.02 1.27 16 34 H 0.09 0.85 8.09 -2.39 -0.02 0.84 16 35 H 0.09 0.85 8.08 -2.39 -0.02 0.83 16 36 H 0.15 1.36 8.06 -2.91 -0.02 1.33 16 37 H 0.15 1.59 7.60 -2.91 -0.02 1.57 16 38 H 0.15 1.60 7.60 -2.91 -0.02 1.57 16 39 H 0.15 1.36 8.06 -2.91 -0.02 1.34 16 Total: -1.00 -66.60 358.86 7.28 -59.32 By element: Atomic # 1 Polarization: 2.71 SS G_CDS: 1.04 Total: 3.75 kcal Atomic # 6 Polarization: -34.55 SS G_CDS: 2.89 Total: -31.65 kcal Atomic # 7 Polarization: -56.89 SS G_CDS: 0.28 Total: -56.60 kcal Atomic # 9 Polarization: -9.49 SS G_CDS: 2.26 Total: -7.24 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.52 kcal Atomic # 16 Polarization: -11.88 SS G_CDS: -1.23 Total: -13.10 kcal Total: -66.60 7.28 -59.32 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000616303659.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.212 kcal (2) G-P(sol) polarization free energy of solvation -66.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -180.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds