Wall clock time and date at job start Tue Mar 31 2020 11:44:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36931 * 120.00052 * 2 1 4 4 H 1.08000 * 120.00087 * 200.40146 * 3 2 1 5 5 C 1.38812 * 120.00315 * 20.40235 * 3 2 1 6 6 N 1.31617 * 120.00110 * 14.94668 * 5 3 2 7 7 Si 1.86803 * 120.00309 * 194.94678 * 5 3 2 8 8 H 1.48502 * 109.47130 * 85.00027 * 7 5 3 9 9 H 1.48494 * 109.47124 * 205.00417 * 7 5 3 10 10 H 1.48504 * 109.47017 * 325.00177 * 7 5 3 11 11 C 1.46504 * 120.00032 * 179.97438 * 2 1 3 12 12 N 1.46501 * 109.46863 * 270.00404 * 11 2 1 13 13 C 1.39548 * 124.33329 * 89.99992 * 12 11 2 14 14 C 1.38542 * 131.34292 * 359.97438 * 13 12 11 15 15 C 1.39063 * 120.39976 * 180.02562 * 14 13 12 16 16 C 1.39475 * 120.32017 * 359.90896 * 15 14 13 17 17 C 1.38125 * 119.94791 * 0.08650 * 16 15 14 18 18 C 1.39773 * 119.85113 * 359.97438 * 17 16 15 19 19 C 1.47134 * 132.98784 * 180.28242 * 18 17 16 20 20 O 1.21409 * 127.53749 * 359.93151 * 19 18 17 21 21 C 1.34416 * 124.33621 * 270.01798 * 12 11 2 22 22 O 1.21313 * 126.21787 * 359.97438 * 21 12 11 23 23 O 1.36212 * 120.81173 * 180.22139 * 16 15 14 24 24 C 1.43175 * 116.68221 * 342.88200 * 23 16 15 25 25 C 1.53466 * 108.20177 * 46.13210 * 24 23 16 26 26 O 1.35954 * 119.09495 * 179.78919 * 15 14 13 27 27 H 1.08997 * 109.47668 * 275.09218 * 1 2 3 28 28 H 1.09003 * 109.46946 * 35.09004 * 1 2 3 29 29 H 1.08996 * 109.47533 * 155.08213 * 1 2 3 30 30 H 0.96998 * 120.00671 * 179.97438 * 6 5 3 31 31 H 1.08995 * 109.47383 * 150.00202 * 11 2 1 32 32 H 1.09009 * 109.46748 * 30.00007 * 11 2 1 33 33 H 1.07995 * 119.79652 * 0.02725 * 14 13 12 34 34 H 1.08000 * 120.07682 * 179.97438 * 17 16 15 35 35 H 1.08992 * 109.72056 * 165.81259 * 24 23 16 36 36 H 1.09004 * 109.71153 * 286.41746 * 24 23 16 37 37 H 1.08999 * 109.69944 * 59.79954 * 25 24 23 38 38 H 1.09004 * 109.69726 * 180.40840 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1788 1.2152 -0.3260 5 6 1.5210 2.3503 0.4191 6 7 0.3878 2.2833 1.0853 7 14 2.2831 4.0126 0.0375 8 1 1.8690 4.4470 -1.3208 9 1 1.8233 5.0092 1.0377 10 1 3.7631 3.9029 0.0924 11 6 2.1975 -1.2688 0.0006 12 7 2.4416 -1.6910 1.3820 13 6 1.5747 -2.4941 2.1243 14 6 0.3549 -3.0661 1.8015 15 6 -0.3282 -3.8398 2.7335 16 6 0.2090 -4.0499 4.0034 17 6 1.4242 -3.4862 4.3399 18 6 2.1123 -2.7070 3.4056 19 6 3.3964 -1.9900 3.4484 20 8 4.1767 -1.9250 4.3762 21 6 3.5289 -1.3543 2.0969 22 8 4.4524 -0.6660 1.7158 23 8 -0.4494 -4.8097 4.9225 24 6 -1.8388 -5.0538 4.6782 25 6 -2.0031 -5.4586 3.2071 26 8 -1.5253 -4.3850 2.3899 27 1 -0.3634 0.0912 1.0235 28 1 -0.3633 0.8409 -0.5908 29 1 -0.3634 -0.9319 -0.4329 30 1 -0.0513 3.0970 1.3785 31 1 3.1499 -1.1387 -0.5133 32 1 1.6083 -2.0286 -0.5130 33 1 -0.0680 -2.9101 0.8201 34 1 1.8419 -3.6471 5.3228 35 1 -2.1895 -5.8597 5.3228 36 1 -2.4118 -4.1480 4.8772 37 1 -1.4226 -6.3592 3.0068 38 1 -3.0556 -5.6437 2.9922 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000725772784.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:44:45 Heat of formation + Delta-G solvation = -70.675271 kcal Electronic energy + Delta-G solvation = -27064.677580 eV Core-core repulsion = 23067.601050 eV Total energy + Delta-G solvation = -3997.076530 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.109 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.96055 -41.90660 -39.57481 -39.06489 -38.30258 -37.55983 -36.04882 -33.49838 -32.18711 -31.39460 -30.06426 -28.04142 -27.98264 -26.71871 -25.08448 -23.82742 -23.24843 -21.94003 -21.18851 -19.51293 -19.33145 -18.82784 -18.37832 -17.65912 -17.51750 -17.20491 -16.66616 -16.64784 -16.26953 -15.89404 -15.64486 -15.51053 -15.40495 -15.21194 -14.95462 -14.82441 -14.72262 -14.08754 -13.82821 -13.53753 -13.24829 -13.05235 -12.86301 -12.75383 -12.64167 -12.37800 -12.11490 -12.00929 -11.95631 -11.52940 -10.97888 -10.85332 -10.62133 -9.73965 -9.14215 -8.80139 -7.97622 -5.46779 -1.10071 0.06264 0.57954 1.33779 1.42222 1.47623 1.50806 1.88217 1.98494 2.02994 2.42522 2.51276 2.73859 3.17284 3.22775 3.34267 3.56879 3.57041 3.67631 3.98737 4.06394 4.11791 4.21114 4.43739 4.54232 4.55590 4.66922 4.71456 4.73217 4.80087 4.91023 5.05500 5.22923 5.32271 5.57176 5.67452 5.73803 5.82063 5.91289 6.18286 6.30731 6.63454 7.00914 7.65276 8.04002 9.03838 Molecular weight = 318.11amu Principal moments of inertia in cm(-1) A = 0.015529 B = 0.004579 C = 0.003949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1802.594723 B = 6113.144946 C = 7088.420659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.170 3.830 2 N -0.590 5.590 3 C -0.272 4.272 4 H 0.067 0.933 5 C -0.037 4.037 6 N -0.925 5.925 7 Si 0.962 3.038 8 H -0.273 1.273 9 H -0.293 1.293 10 H -0.280 1.280 11 C 0.338 3.662 12 N -0.543 5.543 13 C 0.213 3.787 14 C -0.151 4.151 15 C 0.142 3.858 16 C 0.006 3.994 17 C 0.005 3.995 18 C -0.260 4.260 19 C 0.396 3.604 20 O -0.414 6.414 21 C 0.484 3.516 22 O -0.491 6.491 23 O -0.313 6.313 24 C 0.012 3.988 25 C 0.013 3.987 26 O -0.307 6.307 27 H 0.007 0.993 28 H 0.025 0.975 29 H 0.050 0.950 30 H 0.252 0.748 31 H 0.081 0.919 32 H 0.121 0.879 33 H 0.156 0.844 34 H 0.160 0.840 35 H 0.160 0.840 36 H 0.078 0.922 37 H 0.093 0.907 38 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.253 -20.328 3.904 22.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.311 5.311 3 C -0.402 4.402 4 H 0.085 0.915 5 C -0.234 4.234 6 N -0.570 5.570 7 Si 0.790 3.210 8 H -0.199 1.199 9 H -0.219 1.219 10 H -0.206 1.206 11 C 0.132 3.868 12 N -0.272 5.272 13 C 0.115 3.885 14 C -0.172 4.172 15 C 0.094 3.906 16 C -0.039 4.039 17 C -0.014 4.014 18 C -0.265 4.265 19 C 0.269 3.731 20 O -0.286 6.286 21 C 0.268 3.732 22 O -0.364 6.364 23 O -0.229 6.229 24 C -0.063 4.063 25 C -0.061 4.061 26 O -0.220 6.220 27 H 0.025 0.975 28 H 0.043 0.957 29 H 0.068 0.932 30 H 0.061 0.939 31 H 0.099 0.901 32 H 0.139 0.861 33 H 0.174 0.826 34 H 0.178 0.822 35 H 0.178 0.822 36 H 0.096 0.904 37 H 0.111 0.889 38 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -8.475 -19.690 4.038 21.813 hybrid contribution 0.334 1.481 0.052 1.519 sum -8.141 -18.209 4.090 20.361 Atomic orbital electron populations 1.20747 0.81179 0.97314 0.98217 1.44996 1.03287 1.01687 1.81096 1.19450 0.97166 0.85893 1.37720 0.91548 1.25699 0.98218 1.01631 0.97881 1.70214 1.19654 1.27620 1.39474 0.85369 0.77988 0.79914 0.77704 1.19913 1.21944 1.20565 1.21970 0.97983 0.87495 0.79357 1.48340 1.17621 1.44903 1.16373 1.18267 0.91255 0.89465 0.89551 1.19388 0.92763 1.03505 1.01560 1.18713 0.86663 0.94397 0.90782 1.18362 0.95545 1.01508 0.88528 1.19908 0.91471 0.91065 0.98953 1.19966 0.99307 1.10482 0.96764 1.22597 0.85450 0.77966 0.87085 1.90520 1.47270 1.52421 1.38386 1.21383 0.82801 0.80709 0.88356 1.90707 1.34816 1.35153 1.75762 1.86335 1.24782 1.66621 1.45112 1.24033 0.79253 1.04806 0.98186 1.24155 1.04439 0.87874 0.89658 1.86292 1.31228 1.49785 1.54720 0.97467 0.95653 0.93205 0.93892 0.90059 0.86149 0.82627 0.82241 0.82218 0.90376 0.88871 0.82281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 7.60 9.02 127.77 1.15 8.75 16 2 N -0.59 -27.92 3.17 -738.77 -2.34 -30.26 16 3 C -0.27 -14.96 9.68 84.03 0.81 -14.14 16 4 H 0.07 3.75 7.86 -2.91 -0.02 3.73 16 5 C -0.04 -2.10 5.07 84.86 0.43 -1.67 16 6 N -0.92 -53.79 10.67 21.65 0.23 -53.56 16 7 Si 0.96 46.22 29.58 68.60 2.03 48.24 16 8 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 9 H -0.29 -14.12 7.11 99.48 0.71 -13.42 16 10 H -0.28 -13.52 7.11 99.48 0.71 -12.81 16 11 C 0.34 12.82 6.35 170.96 1.09 13.90 16 12 N -0.54 -20.99 2.98 -642.70 -1.92 -22.91 16 13 C 0.21 7.06 6.74 38.55 0.26 7.32 16 14 C -0.15 -4.16 9.68 22.54 0.22 -3.94 16 15 C 0.14 3.46 6.51 22.77 0.15 3.61 16 16 C 0.01 0.15 6.48 22.54 0.15 0.30 16 17 C 0.01 0.14 10.01 22.61 0.23 0.37 16 18 C -0.26 -8.59 6.33 -20.00 -0.13 -8.72 16 19 C 0.40 15.57 7.95 27.79 0.22 15.79 16 20 O -0.41 -17.28 18.03 -3.43 -0.06 -17.34 16 21 C 0.48 21.17 8.16 87.48 0.71 21.89 16 22 O -0.49 -24.82 17.70 -3.13 -0.06 -24.88 16 23 O -0.31 -6.12 10.42 -83.82 -0.87 -7.00 16 24 C 0.01 0.13 7.26 72.14 0.52 0.65 16 25 C 0.01 0.13 7.25 72.14 0.52 0.65 16 26 O -0.31 -6.02 10.40 -80.89 -0.84 -6.87 16 27 H 0.01 0.35 7.40 -2.39 -0.02 0.33 16 28 H 0.02 1.24 7.21 -2.39 -0.02 1.22 16 29 H 0.05 1.73 7.69 -2.39 -0.02 1.72 16 30 H 0.25 14.29 8.31 -92.71 -0.77 13.52 16 31 H 0.08 3.16 7.86 -2.39 -0.02 3.14 16 32 H 0.12 3.46 7.44 -2.38 -0.02 3.44 16 33 H 0.16 3.90 7.62 -2.91 -0.02 3.87 16 34 H 0.16 3.74 8.06 -2.91 -0.02 3.71 16 35 H 0.16 0.48 8.14 -2.39 -0.02 0.46 16 36 H 0.08 0.89 8.14 -2.38 -0.02 0.87 16 37 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 38 H 0.16 0.45 8.14 -2.38 -0.02 0.43 16 Total: -1.00 -74.30 332.77 3.62 -70.67 By element: Atomic # 1 Polarization: -1.96 SS G_CDS: 1.11 Total: -0.84 kcal Atomic # 6 Polarization: 38.40 SS G_CDS: 6.34 Total: 44.74 kcal Atomic # 7 Polarization: -102.71 SS G_CDS: -4.03 Total: -106.73 kcal Atomic # 8 Polarization: -54.25 SS G_CDS: -1.83 Total: -56.09 kcal Atomic # 14 Polarization: 46.22 SS G_CDS: 2.03 Total: 48.24 kcal Total: -74.30 3.62 -70.67 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725772784.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.001 kcal (2) G-P(sol) polarization free energy of solvation -74.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds