Wall clock time and date at job start Tue Mar 31 2020 12:22:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.29946 * 126.28915 * 2 1 4 4 O 1.21298 * 110.25145 * 179.68553 * 3 2 1 5 5 C 1.33641 * 109.80943 * 0.47009 * 4 3 2 6 6 C 1.50699 * 126.54775 * 179.80270 * 5 4 3 7 7 N 1.46497 * 109.47093 * 269.68289 * 6 5 4 8 8 C 1.34780 * 120.00192 * 180.02562 * 7 6 5 9 9 O 1.21591 * 119.99621 * 359.97438 * 8 7 6 10 10 N 1.34771 * 120.00301 * 179.72473 * 8 7 6 11 11 C 1.39944 * 120.00309 * 175.00734 * 10 8 7 12 12 C 1.38956 * 120.03804 * 146.08813 * 11 10 8 13 13 C 1.38157 * 120.06848 * 179.74586 * 12 11 10 14 14 C 1.38166 * 120.13611 * 0.55464 * 13 12 11 15 15 C 1.38903 * 120.07242 * 359.69532 * 14 13 12 16 16 O 1.35754 * 120.03552 * 180.02562 * 15 14 13 17 17 C 1.34821 * 117.00123 * 5.93018 * 16 15 14 18 18 H 1.08010 * 120.00239 * 5.40620 * 17 16 15 19 19 C 1.38659 * 120.00340 * 185.40879 * 17 16 15 20 20 N 1.31553 * 119.99522 * 359.97438 * 19 17 16 21 21 Si 1.86793 * 120.00115 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47062 * 89.99779 * 21 19 17 23 23 H 1.48501 * 109.47272 * 209.99853 * 21 19 17 24 24 H 1.48501 * 109.47475 * 329.99704 * 21 19 17 25 25 C 1.38710 * 120.03577 * 326.36303 * 11 10 8 26 26 N 1.31130 * 106.90137 * 359.53717 * 5 4 3 27 27 H 1.09002 * 109.46592 * 270.02849 * 1 2 3 28 28 H 1.09000 * 109.46794 * 30.02368 * 1 2 3 29 29 H 1.08995 * 109.47106 * 150.02700 * 1 2 3 30 30 H 1.09008 * 109.47109 * 149.68486 * 6 5 4 31 31 H 1.08997 * 109.47537 * 29.68404 * 6 5 4 32 32 H 0.96991 * 120.00180 * 0.02562 * 7 6 5 33 33 H 0.96998 * 120.00033 * 355.00982 * 10 8 7 34 34 H 1.08000 * 119.96326 * 0.02562 * 12 11 10 35 35 H 1.07999 * 119.93232 * 180.27135 * 13 12 11 36 36 H 1.08002 * 119.96561 * 179.72636 * 14 13 12 37 37 H 0.96999 * 119.99913 * 180.02562 * 20 19 17 38 38 H 1.08006 * 120.06313 * 359.95252 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2761 1.0474 0.0000 4 8 3.4419 0.7123 0.0062 5 6 3.5298 -0.6212 0.0007 6 6 4.7969 -1.4370 0.0012 7 7 5.2079 -1.7016 -1.3798 8 6 6.3218 -2.4195 -1.6257 9 8 6.9859 -2.8469 -0.7012 10 7 6.6968 -2.6677 -2.8962 11 6 7.9068 -3.3220 -3.1535 12 6 8.0153 -4.1820 -4.2395 13 6 9.2111 -4.8242 -4.4972 14 6 10.2992 -4.6225 -3.6698 15 6 10.1956 -3.7680 -2.5796 16 8 11.2653 -3.5700 -1.7675 17 6 12.4311 -4.1339 -2.1424 18 1 12.5057 -4.6379 -3.0948 19 6 13.5345 -4.0670 -1.3053 20 7 13.4438 -3.4528 -0.1455 21 14 15.1499 -4.8476 -1.8251 22 1 15.9642 -3.8525 -2.5680 23 1 15.8937 -5.2953 -0.6202 24 1 14.8763 -6.0157 -2.7002 25 6 8.9976 -3.1171 -2.3214 26 7 2.3030 -1.0842 0.0004 27 1 -0.3632 0.0005 1.0277 28 1 -0.3633 0.8898 -0.5142 29 1 -0.3633 -0.8902 -0.5134 30 1 4.6205 -2.3819 0.5152 31 1 5.5841 -0.8853 0.5151 32 1 4.6783 -1.3603 -2.1173 33 1 6.1281 -2.3928 -3.6323 34 1 7.1653 -4.3451 -4.8854 35 1 9.2943 -5.4888 -5.3444 36 1 11.2313 -5.1294 -3.8713 37 1 14.2158 -3.4056 0.4400 38 1 8.9146 -2.4519 -1.4745 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000727230710.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:22:04 Heat of formation + Delta-G solvation = 54.479032 kcal Electronic energy + Delta-G solvation = -24789.833216 eV Core-core repulsion = 20830.476535 eV Total energy + Delta-G solvation = -3959.356681 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.116 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -46.06630 -40.45220 -38.76475 -36.88753 -36.52494 -35.45469 -34.14510 -33.03380 -32.21792 -29.82751 -29.47418 -28.74697 -27.31502 -25.25291 -24.06588 -22.64126 -21.91285 -21.45114 -20.75051 -18.85388 -18.57401 -18.25714 -17.72533 -17.11322 -16.29405 -15.70446 -15.24383 -15.04532 -14.90844 -14.61015 -14.19712 -14.11832 -14.05763 -13.95789 -13.55213 -13.41404 -13.15190 -12.83533 -12.56843 -12.48213 -11.92079 -11.72685 -11.52409 -11.50228 -11.18871 -10.96940 -10.79218 -10.51826 -10.43987 -10.09265 -9.76083 -9.46499 -9.25729 -8.78695 -7.66347 -7.16186 -6.39456 -3.98521 0.54416 1.66928 2.06803 2.19335 2.36977 2.68958 3.13021 3.15830 3.16787 3.21865 3.25235 3.57099 3.97155 4.10454 4.38569 4.61638 4.84264 4.90406 4.91348 5.09847 5.15869 5.20624 5.33927 5.39977 5.52658 5.63669 5.84163 5.95417 6.11727 6.22251 6.34316 6.45755 6.79956 7.01368 7.08429 7.16073 7.36774 7.50228 7.68058 7.81965 7.89390 8.05257 8.52999 9.05468 9.77053 10.78452 Molecular weight = 318.12amu Principal moments of inertia in cm(-1) A = 0.024647 B = 0.002267 C = 0.002111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.788661 B =12349.050538 C =13263.489120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.165 3.835 3 N -0.379 5.379 4 O 0.090 5.910 5 C 0.169 3.831 6 C 0.237 3.763 7 N -0.746 5.746 8 C 0.706 3.294 9 O -0.552 6.552 10 N -0.677 5.677 11 C 0.193 3.807 12 C -0.236 4.236 13 C -0.058 4.058 14 C -0.245 4.245 15 C 0.168 3.832 16 O -0.173 6.173 17 C -0.391 4.391 18 H 0.092 0.908 19 C 0.038 3.962 20 N -0.860 5.860 21 Si 0.941 3.059 22 H -0.274 1.274 23 H -0.278 1.278 24 H -0.268 1.268 25 C -0.186 4.186 26 N -0.462 5.462 27 H 0.090 0.910 28 H 0.087 0.913 29 H 0.093 0.907 30 H 0.118 0.882 31 H 0.111 0.889 32 H 0.399 0.601 33 H 0.403 0.597 34 H 0.108 0.892 35 H 0.112 0.888 36 H 0.128 0.872 37 H 0.270 0.730 38 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.058 5.309 -3.951 23.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.107 4.107 3 N -0.086 5.086 4 O 0.029 5.971 5 C -0.052 4.052 6 C 0.110 3.890 7 N -0.406 5.406 8 C 0.406 3.594 9 O -0.426 6.426 10 N -0.324 5.324 11 C 0.100 3.900 12 C -0.258 4.258 13 C -0.077 4.077 14 C -0.265 4.265 15 C 0.113 3.887 16 O -0.076 6.076 17 C -0.467 4.467 18 H 0.110 0.890 19 C -0.166 4.166 20 N -0.495 5.495 21 Si 0.766 3.234 22 H -0.199 1.199 23 H -0.203 1.203 24 H -0.192 1.192 25 C -0.208 4.208 26 N -0.197 5.197 27 H 0.109 0.891 28 H 0.106 0.894 29 H 0.112 0.888 30 H 0.136 0.864 31 H 0.129 0.871 32 H 0.233 0.767 33 H 0.237 0.763 34 H 0.126 0.874 35 H 0.130 0.870 36 H 0.145 0.855 37 H 0.080 0.920 38 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -21.920 5.638 -2.607 22.783 hybrid contribution 0.288 -0.149 -0.986 1.038 sum -21.632 5.489 -3.594 22.605 Atomic orbital electron populations 1.20172 0.82640 1.04838 1.04520 1.26007 1.00788 0.83332 1.00585 1.74697 0.89374 1.23897 1.20611 1.85355 1.22324 1.24585 1.64791 1.28714 0.96786 0.82347 0.97391 1.19438 0.86701 0.98105 0.84709 1.44861 1.28546 1.59735 1.07409 1.15738 0.80555 0.79217 0.83845 1.91075 1.54214 1.54602 1.42728 1.42408 1.22296 1.61533 1.06201 1.16910 0.83072 0.93898 0.96131 1.20224 0.98944 1.04457 1.02127 1.20490 0.92123 0.97328 0.97726 1.21182 1.00449 1.05682 0.99180 1.19115 0.88083 0.91840 0.89650 1.84005 1.15356 1.64831 1.43419 1.21331 0.84967 1.36247 1.04188 0.89025 1.25304 0.99167 0.97102 0.95038 1.70052 1.31020 1.39467 1.08944 0.85710 0.80303 0.79155 0.78222 1.19930 1.20311 1.19201 1.20035 0.90282 1.06629 1.03861 1.71972 0.99627 1.29415 1.18713 0.89128 0.89372 0.88846 0.86434 0.87075 0.76715 0.76268 0.87411 0.87028 0.85452 0.92040 0.85121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.33 10.51 36.01 0.38 0.05 16 2 C 0.17 1.52 8.22 -156.37 -1.28 0.24 16 3 N -0.38 -3.98 12.16 30.90 0.38 -3.60 16 4 O 0.09 0.89 11.31 18.11 0.20 1.10 16 5 C 0.17 1.53 7.88 -13.06 -0.10 1.43 16 6 C 0.24 2.09 6.30 -5.20 -0.03 2.06 16 7 N -0.75 -7.23 5.55 -66.41 -0.37 -7.59 16 8 C 0.71 10.19 8.30 -86.92 -0.72 9.47 16 9 O -0.55 -10.73 14.05 5.29 0.07 -10.65 16 10 N -0.68 -9.25 5.35 -14.24 -0.08 -9.33 16 11 C 0.19 3.51 6.27 -83.71 -0.53 2.98 16 12 C -0.24 -3.94 9.96 -39.35 -0.39 -4.33 16 13 C -0.06 -1.04 10.03 -39.64 -0.40 -1.43 16 14 C -0.25 -5.34 9.13 -39.36 -0.36 -5.70 16 15 C 0.17 4.18 6.64 -39.14 -0.26 3.92 16 16 O -0.17 -5.08 9.75 0.06 0.00 -5.08 16 17 C -0.39 -11.06 9.44 30.89 0.29 -10.77 16 18 H 0.09 2.38 5.30 -52.48 -0.28 2.10 16 19 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 20 N -0.86 -25.68 13.67 55.48 0.76 -24.92 16 21 Si 0.94 20.70 29.55 -169.99 -5.02 15.67 16 22 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 23 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 24 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 25 C -0.19 -4.20 8.59 -39.21 -0.34 -4.54 16 26 N -0.46 -4.60 11.55 -9.87 -0.11 -4.71 16 27 H 0.09 0.37 8.14 -51.93 -0.42 -0.06 16 28 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.09 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.12 1.05 8.14 -51.92 -0.42 0.63 16 31 H 0.11 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.40 2.81 8.48 -40.82 -0.35 2.47 16 33 H 0.40 3.76 8.84 -40.82 -0.36 3.40 16 34 H 0.11 1.44 8.06 -52.49 -0.42 1.01 16 35 H 0.11 1.64 8.06 -52.49 -0.42 1.21 16 36 H 0.13 2.76 5.71 -52.49 -0.30 2.46 16 37 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 38 H 0.13 3.14 6.44 -52.48 -0.34 2.80 16 LS Contribution 340.92 15.07 5.14 5.14 Total: -1.00 -35.84 340.92 -6.59 -42.43 By element: Atomic # 1 Polarization: 10.93 SS G_CDS: -3.72 Total: 7.21 kcal Atomic # 6 Polarization: -1.82 SS G_CDS: -3.84 Total: -5.66 kcal Atomic # 7 Polarization: -50.73 SS G_CDS: 0.58 Total: -50.16 kcal Atomic # 8 Polarization: -14.92 SS G_CDS: 0.28 Total: -14.64 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -35.84 -6.59 -42.43 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000727230710.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.908 kcal (2) G-P(sol) polarization free energy of solvation -35.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.429 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds