Wall clock time and date at job start Tue Mar 31 2020 12:22:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.29946 * 126.28915 * 2 1 4 4 O 1.21298 * 110.25145 * 179.68553 * 3 2 1 5 5 C 1.33641 * 109.80943 * 0.47009 * 4 3 2 6 6 C 1.50699 * 126.54775 * 179.80270 * 5 4 3 7 7 N 1.46497 * 109.47093 * 269.68289 * 6 5 4 8 8 C 1.34780 * 120.00192 * 180.02562 * 7 6 5 9 9 O 1.21591 * 119.99621 * 359.97438 * 8 7 6 10 10 N 1.34771 * 120.00301 * 179.72473 * 8 7 6 11 11 C 1.39944 * 120.00309 * 175.00734 * 10 8 7 12 12 C 1.38956 * 120.03804 * 146.08813 * 11 10 8 13 13 C 1.38157 * 120.06848 * 179.74586 * 12 11 10 14 14 C 1.38166 * 120.13611 * 0.55464 * 13 12 11 15 15 C 1.38903 * 120.07242 * 359.69532 * 14 13 12 16 16 O 1.35754 * 120.03552 * 180.02562 * 15 14 13 17 17 C 1.34821 * 117.00123 * 5.93018 * 16 15 14 18 18 H 1.08010 * 120.00239 * 5.40620 * 17 16 15 19 19 C 1.38659 * 120.00340 * 185.40879 * 17 16 15 20 20 N 1.31553 * 119.99522 * 359.97438 * 19 17 16 21 21 Si 1.86793 * 120.00115 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47062 * 89.99779 * 21 19 17 23 23 H 1.48501 * 109.47272 * 209.99853 * 21 19 17 24 24 H 1.48501 * 109.47475 * 329.99704 * 21 19 17 25 25 C 1.38710 * 120.03577 * 326.36303 * 11 10 8 26 26 N 1.31130 * 106.90137 * 359.53717 * 5 4 3 27 27 H 1.09002 * 109.46592 * 270.02849 * 1 2 3 28 28 H 1.09000 * 109.46794 * 30.02368 * 1 2 3 29 29 H 1.08995 * 109.47106 * 150.02700 * 1 2 3 30 30 H 1.09008 * 109.47109 * 149.68486 * 6 5 4 31 31 H 1.08997 * 109.47537 * 29.68404 * 6 5 4 32 32 H 0.96991 * 120.00180 * 0.02562 * 7 6 5 33 33 H 0.96998 * 120.00033 * 355.00982 * 10 8 7 34 34 H 1.08000 * 119.96326 * 0.02562 * 12 11 10 35 35 H 1.07999 * 119.93232 * 180.27135 * 13 12 11 36 36 H 1.08002 * 119.96561 * 179.72636 * 14 13 12 37 37 H 0.96999 * 119.99913 * 180.02562 * 20 19 17 38 38 H 1.08006 * 120.06313 * 359.95252 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2761 1.0474 0.0000 4 8 3.4419 0.7123 0.0062 5 6 3.5298 -0.6212 0.0007 6 6 4.7969 -1.4370 0.0012 7 7 5.2079 -1.7016 -1.3798 8 6 6.3218 -2.4195 -1.6257 9 8 6.9859 -2.8469 -0.7012 10 7 6.6968 -2.6677 -2.8962 11 6 7.9068 -3.3220 -3.1535 12 6 8.0153 -4.1820 -4.2395 13 6 9.2111 -4.8242 -4.4972 14 6 10.2992 -4.6225 -3.6698 15 6 10.1956 -3.7680 -2.5796 16 8 11.2653 -3.5700 -1.7675 17 6 12.4311 -4.1339 -2.1424 18 1 12.5057 -4.6379 -3.0948 19 6 13.5345 -4.0670 -1.3053 20 7 13.4438 -3.4528 -0.1455 21 14 15.1499 -4.8476 -1.8251 22 1 15.9642 -3.8525 -2.5680 23 1 15.8937 -5.2953 -0.6202 24 1 14.8763 -6.0157 -2.7002 25 6 8.9976 -3.1171 -2.3214 26 7 2.3030 -1.0842 0.0004 27 1 -0.3632 0.0005 1.0277 28 1 -0.3633 0.8898 -0.5142 29 1 -0.3633 -0.8902 -0.5134 30 1 4.6205 -2.3819 0.5152 31 1 5.5841 -0.8853 0.5151 32 1 4.6783 -1.3603 -2.1173 33 1 6.1281 -2.3928 -3.6323 34 1 7.1653 -4.3451 -4.8854 35 1 9.2943 -5.4888 -5.3444 36 1 11.2313 -5.1294 -3.8713 37 1 14.2158 -3.4056 0.4400 38 1 8.9146 -2.4519 -1.4745 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000727230710.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:22:03 Heat of formation + Delta-G solvation = 25.264332 kcal Electronic energy + Delta-G solvation = -24791.100061 eV Core-core repulsion = 20830.476535 eV Total energy + Delta-G solvation = -3960.623525 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.116 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -46.80693 -41.73984 -40.44183 -38.41709 -37.33864 -36.48223 -35.56566 -34.23333 -33.85532 -31.16483 -30.40967 -30.03487 -28.37873 -27.26026 -24.83088 -23.99764 -23.11806 -22.64070 -22.07465 -20.03347 -19.92140 -19.31033 -18.99611 -18.46631 -17.54134 -16.91010 -16.67425 -16.34556 -16.31855 -15.89133 -15.62078 -15.46587 -15.21101 -15.01107 -14.51850 -14.51607 -14.21199 -14.17128 -13.70194 -13.55118 -13.25285 -13.12748 -12.89294 -12.63434 -12.60329 -12.32954 -12.25602 -12.10704 -11.67162 -11.32655 -11.18692 -10.98902 -10.72586 -10.43321 -9.26898 -8.81040 -8.43062 -6.11991 -0.22029 0.50277 0.76101 0.94044 1.33582 1.37257 1.47260 1.55591 1.73578 1.99434 2.20913 2.47647 2.87822 2.93833 3.04798 3.22874 3.60344 3.70924 4.15113 4.19292 4.30460 4.42632 4.45160 4.47469 4.56587 4.64250 4.73003 4.76645 4.78814 4.98734 5.05888 5.08916 5.15309 5.38891 5.49389 5.68693 5.79604 5.85124 6.07285 6.25550 6.85148 6.95391 7.00937 7.38513 7.84426 8.80783 Molecular weight = 318.12amu Principal moments of inertia in cm(-1) A = 0.024647 B = 0.002267 C = 0.002111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.788661 B =12349.050538 C =13263.489120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.165 3.835 3 N -0.400 5.400 4 O 0.080 5.920 5 C 0.179 3.821 6 C 0.238 3.762 7 N -0.722 5.722 8 C 0.706 3.294 9 O -0.606 6.606 10 N -0.662 5.662 11 C 0.204 3.796 12 C -0.204 4.204 13 C -0.048 4.048 14 C -0.256 4.256 15 C 0.127 3.873 16 O -0.235 6.235 17 C -0.411 4.411 18 H 0.106 0.894 19 C -0.029 4.029 20 N -0.924 5.924 21 Si 1.023 2.977 22 H -0.263 1.263 23 H -0.274 1.274 24 H -0.249 1.249 25 C -0.211 4.211 26 N -0.476 5.476 27 H 0.104 0.896 28 H 0.100 0.900 29 H 0.105 0.895 30 H 0.120 0.880 31 H 0.115 0.885 32 H 0.416 0.584 33 H 0.429 0.571 34 H 0.164 0.836 35 H 0.159 0.841 36 H 0.122 0.878 37 H 0.271 0.729 38 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.673 4.271 -7.085 26.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.107 4.107 3 N -0.109 5.109 4 O 0.023 5.977 5 C -0.042 4.042 6 C 0.112 3.888 7 N -0.382 5.382 8 C 0.406 3.594 9 O -0.483 6.483 10 N -0.311 5.311 11 C 0.109 3.891 12 C -0.225 4.225 13 C -0.067 4.067 14 C -0.276 4.276 15 C 0.076 3.924 16 O -0.141 6.141 17 C -0.487 4.487 18 H 0.123 0.877 19 C -0.225 4.225 20 N -0.562 5.562 21 Si 0.841 3.159 22 H -0.187 1.187 23 H -0.199 1.199 24 H -0.173 1.173 25 C -0.233 4.233 26 N -0.211 5.211 27 H 0.122 0.878 28 H 0.118 0.882 29 H 0.124 0.876 30 H 0.138 0.862 31 H 0.133 0.867 32 H 0.253 0.747 33 H 0.268 0.732 34 H 0.181 0.819 35 H 0.176 0.824 36 H 0.139 0.861 37 H 0.080 0.920 38 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -24.648 4.636 -5.822 25.747 hybrid contribution 0.669 0.219 -0.146 0.719 sum -23.979 4.855 -5.968 25.183 Atomic orbital electron populations 1.20400 0.80079 1.06028 1.05733 1.26715 1.02250 0.82670 0.99068 1.74708 0.89586 1.24648 1.21951 1.85339 1.22443 1.24788 1.65124 1.28577 0.96574 0.82146 0.96941 1.19459 0.86862 0.98337 0.84105 1.44563 1.27071 1.58028 1.08522 1.15875 0.80990 0.79131 0.83361 1.91068 1.56124 1.56735 1.44399 1.42171 1.21071 1.60893 1.06991 1.17009 0.83172 0.93577 0.95328 1.20847 1.00007 1.00896 1.00752 1.21015 0.90868 0.97083 0.97716 1.21320 1.01924 1.05327 0.99042 1.19668 0.88037 0.93881 0.90851 1.83965 1.16734 1.67492 1.45931 1.21876 0.85492 1.36282 1.05041 0.87682 1.26688 1.03355 0.97606 0.94888 1.70221 1.32466 1.42597 1.10944 0.84536 0.74555 0.78637 0.78129 1.18741 1.19879 1.17279 1.20075 0.91507 1.07177 1.04502 1.72004 0.99928 1.29915 1.19267 0.87789 0.88156 0.87643 0.86229 0.86735 0.74679 0.73185 0.81897 0.82370 0.86054 0.91962 0.88063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.53 10.51 71.24 0.75 0.22 16 2 C 0.17 2.77 8.22 138.46 1.14 3.91 16 3 N -0.40 -7.97 12.16 -60.33 -0.73 -8.70 16 4 O 0.08 1.54 11.31 74.85 0.85 2.38 16 5 C 0.18 3.05 7.88 88.38 0.70 3.75 16 6 C 0.24 4.04 6.30 85.63 0.54 4.58 16 7 N -0.72 -12.80 5.55 -482.29 -2.68 -15.48 16 8 C 0.71 19.67 8.30 179.05 1.49 21.16 16 9 O -0.61 -24.16 14.05 -4.00 -0.06 -24.21 16 10 N -0.66 -16.31 5.35 -317.23 -1.70 -18.01 16 11 C 0.20 7.00 6.27 38.13 0.24 7.24 16 12 C -0.20 -5.80 9.96 22.42 0.22 -5.58 16 13 C -0.05 -1.54 10.03 22.23 0.22 -1.32 16 14 C -0.26 -11.11 9.13 22.41 0.20 -10.90 16 15 C 0.13 6.62 6.64 22.56 0.15 6.77 16 16 O -0.23 -14.85 9.75 -22.69 -0.22 -15.07 16 17 C -0.41 -24.57 9.44 67.92 0.64 -23.93 16 18 H 0.11 5.67 5.30 -2.91 -0.02 5.65 16 19 C -0.03 -1.67 5.49 84.84 0.47 -1.20 16 20 N -0.92 -58.87 13.67 21.61 0.30 -58.58 16 21 Si 1.02 43.75 29.55 68.60 2.03 45.78 16 22 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 23 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 24 H -0.25 -9.76 7.11 99.48 0.71 -9.06 16 25 C -0.21 -9.86 8.59 22.51 0.19 -9.67 16 26 N -0.48 -8.72 11.55 -303.20 -3.50 -12.23 16 27 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 28 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 29 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.12 2.08 8.14 -2.38 -0.02 2.06 16 31 H 0.11 1.94 8.14 -2.39 -0.02 1.92 16 32 H 0.42 4.72 8.48 -92.72 -0.79 3.93 16 33 H 0.43 6.08 8.84 -92.71 -0.82 5.26 16 34 H 0.16 3.00 8.06 -2.91 -0.02 2.98 16 35 H 0.16 3.65 8.06 -2.91 -0.02 3.62 16 36 H 0.12 5.31 5.71 -2.91 -0.02 5.29 16 37 H 0.27 15.82 8.31 -92.71 -0.77 15.05 16 38 H 0.10 5.27 6.44 -2.91 -0.02 5.25 16 Total: -1.00 -86.73 340.92 0.78 -85.96 By element: Atomic # 1 Polarization: 23.59 SS G_CDS: -0.45 Total: 23.14 kcal Atomic # 6 Polarization: -11.93 SS G_CDS: 6.95 Total: -4.98 kcal Atomic # 7 Polarization: -104.68 SS G_CDS: -8.31 Total: -113.00 kcal Atomic # 8 Polarization: -37.47 SS G_CDS: 0.57 Total: -36.90 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.78 kcal Total: -86.73 0.78 -85.96 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000727230710.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.219 kcal (2) G-P(sol) polarization free energy of solvation -86.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.955 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds