Wall clock time and date at job start Tue Mar 31 2020 12:50:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.36191 * 126.46047 * 2 1 4 4 N 1.30393 * 108.68054 * 180.02562 * 3 2 1 5 5 C 1.34235 * 109.40401 * 359.73160 * 4 3 2 6 6 N 1.48079 * 125.94962 * 180.31013 * 5 4 3 7 7 O 1.21805 * 120.00362 * 180.15160 * 6 5 4 8 8 O 1.21798 * 120.00041 * 0.14716 * 6 5 4 9 9 C 1.35422 * 108.10679 * 0.43748 * 5 4 3 10 10 N 1.39567 * 126.63418 * 179.83787 * 9 5 4 11 11 C 1.46900 * 111.00071 * 185.43147 * 10 9 5 12 12 C 1.50699 * 109.47208 * 184.80815 * 11 10 9 13 13 C 1.38302 * 119.93714 * 90.00140 * 12 11 10 14 14 C 1.38091 * 120.07497 * 180.02562 * 13 12 11 15 15 C 1.38886 * 119.92964 * 359.96923 * 14 13 12 16 16 O 1.35745 * 120.06714 * 180.02562 * 15 14 13 17 17 C 1.34830 * 117.00159 * 4.78951 * 16 15 14 18 18 H 1.07990 * 120.00372 * 354.35992 * 17 16 15 19 19 C 1.38662 * 119.99883 * 174.35396 * 17 16 15 20 20 N 1.31556 * 120.00180 * 0.02562 * 19 17 16 21 21 Si 1.86794 * 119.99870 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47547 * 0.02562 * 21 19 17 23 23 H 1.48507 * 109.47197 * 120.00596 * 21 19 17 24 24 H 1.48502 * 109.47544 * 240.00283 * 21 19 17 25 25 C 1.38880 * 119.85951 * 0.28117 * 15 14 13 26 26 C 1.38096 * 119.93280 * 359.49304 * 25 15 14 27 27 H 1.09000 * 109.46655 * 261.18242 * 1 2 3 28 28 H 1.08993 * 109.47380 * 21.18058 * 1 2 3 29 29 H 1.09004 * 109.46706 * 141.18417 * 1 2 3 30 30 H 1.07991 * 125.66265 * 0.02562 * 3 2 1 31 31 H 1.00898 * 111.00328 * 309.38391 * 10 9 5 32 32 H 1.09004 * 109.47303 * 64.80644 * 11 10 9 33 33 H 1.09002 * 109.47253 * 304.80618 * 11 10 9 34 34 H 1.08007 * 119.96120 * 359.97438 * 13 12 11 35 35 H 1.07994 * 120.03867 * 179.97438 * 14 13 12 36 36 H 0.96993 * 119.99950 * 179.97438 * 20 19 17 37 37 H 1.07998 * 120.02963 * 179.71964 * 25 15 14 38 38 H 1.07999 * 119.96895 * 180.23399 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2744 1.0953 0.0000 4 7 3.5160 0.6972 -0.0006 5 6 3.5541 -0.6446 0.0050 6 7 4.7770 -1.4796 0.0128 7 8 4.6852 -2.6942 0.0146 8 8 5.8747 -0.9519 0.0174 9 6 2.2794 -1.1019 -0.0006 10 7 1.8736 -2.4372 -0.0008 11 6 0.4149 -2.5442 -0.1376 12 6 0.0035 -3.9888 -0.0156 13 6 -0.3059 -4.5158 1.2251 14 6 -0.6827 -5.8393 1.3403 15 6 -0.7515 -6.6413 0.2085 16 8 -1.1221 -7.9425 0.3185 17 6 -1.5059 -8.3687 1.5387 18 1 -1.4226 -7.7111 2.3912 19 6 -2.0077 -9.6514 1.6989 20 7 -2.1088 -10.4527 0.6605 21 14 -2.5389 -10.2420 3.3896 22 1 -2.3250 -9.1585 4.3823 23 1 -3.9782 -10.6060 3.3572 24 1 -1.7362 -11.4310 3.7734 25 6 -0.4351 -6.1105 -1.0353 26 6 -0.0635 -4.7850 -1.1445 27 1 -0.3632 -0.1575 1.0155 28 1 -0.3634 0.9582 -0.3713 29 1 -0.3633 -0.8008 -0.6442 30 1 1.9429 2.1231 0.0004 31 1 2.3439 -2.9580 -0.7259 32 1 0.1123 -2.1613 -1.1124 33 1 -0.0673 -1.9615 0.6472 34 1 -0.2520 -3.8917 2.1050 35 1 -0.9238 -6.2504 2.3094 36 1 -2.4595 -11.3500 0.7727 37 1 -0.4832 -6.7329 -1.9166 38 1 0.1790 -4.3707 -2.1119 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000727826510.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:50:12 Heat of formation + Delta-G solvation = 88.847198 kcal Electronic energy + Delta-G solvation = -25450.830802 eV Core-core repulsion = 21492.964436 eV Total energy + Delta-G solvation = -3957.866365 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.116 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.20595 -41.55814 -39.34508 -37.74796 -36.41022 -35.94197 -34.54694 -32.49008 -31.03005 -30.37392 -29.17191 -28.28259 -25.78165 -25.69509 -24.51151 -22.22916 -22.05726 -21.53135 -20.63913 -19.15032 -18.38274 -18.18848 -17.72713 -17.19127 -17.00739 -16.70734 -16.04125 -15.46164 -15.05220 -14.85690 -14.66342 -14.39198 -13.93774 -13.78304 -13.71325 -13.34393 -12.99521 -12.85461 -12.07358 -11.81453 -11.49114 -11.40498 -11.33705 -11.27372 -11.04172 -10.97099 -10.83565 -10.75346 -10.73183 -10.51923 -10.21947 -9.49273 -8.98007 -8.52158 -8.37936 -7.41584 -6.58803 -4.17590 0.29804 1.14568 1.34519 1.91174 2.01361 2.05068 2.39159 3.03763 3.06421 3.12140 3.32184 3.85772 3.89335 4.00022 4.10908 4.40452 4.41205 4.61582 4.68057 4.82439 4.95331 5.06722 5.08766 5.11828 5.20796 5.50466 5.59768 5.87228 6.02641 6.18350 6.34444 6.47234 6.51422 6.53307 6.70431 6.87663 6.99480 7.01777 7.16590 7.27634 7.61238 7.85815 7.90548 8.86515 9.53434 10.58561 Molecular weight = 318.12amu Principal moments of inertia in cm(-1) A = 0.021217 B = 0.002605 C = 0.002496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1319.379430 B =10744.397275 C =11215.631369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 N -0.479 5.479 3 C 0.215 3.785 4 N -0.432 5.432 5 C -0.008 4.008 6 N 0.077 4.923 7 O -0.161 6.161 8 O -0.157 6.157 9 C 0.306 3.694 10 N -0.569 5.569 11 C 0.094 3.906 12 C -0.207 4.207 13 C -0.041 4.041 14 C -0.235 4.235 15 C 0.162 3.838 16 O -0.171 6.171 17 C -0.394 4.394 18 H 0.095 0.905 19 C 0.041 3.959 20 N -0.857 5.857 21 Si 0.943 3.057 22 H -0.266 1.266 23 H -0.275 1.275 24 H -0.274 1.274 25 C -0.192 4.192 26 C -0.061 4.061 27 H 0.089 0.911 28 H 0.100 0.900 29 H 0.111 0.889 30 H 0.230 0.770 31 H 0.389 0.611 32 H 0.055 0.945 33 H 0.091 0.909 34 H 0.106 0.894 35 H 0.129 0.871 36 H 0.272 0.728 37 H 0.119 0.881 38 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.231 21.243 -2.090 21.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 N -0.171 5.171 3 C -0.070 4.070 4 N -0.151 5.151 5 C -0.219 4.219 6 N 0.593 4.407 7 O -0.371 6.371 8 O -0.372 6.372 9 C 0.082 3.918 10 N -0.203 5.203 11 C -0.031 4.031 12 C -0.209 4.209 13 C -0.059 4.059 14 C -0.255 4.255 15 C 0.107 3.893 16 O -0.073 6.073 17 C -0.470 4.470 18 H 0.112 0.888 19 C -0.164 4.164 20 N -0.491 5.491 21 Si 0.767 3.233 22 H -0.190 1.190 23 H -0.200 1.200 24 H -0.200 1.200 25 C -0.211 4.211 26 C -0.080 4.080 27 H 0.107 0.893 28 H 0.119 0.881 29 H 0.129 0.871 30 H 0.247 0.753 31 H 0.222 0.778 32 H 0.073 0.927 33 H 0.109 0.891 34 H 0.125 0.875 35 H 0.147 0.853 36 H 0.082 0.918 37 H 0.137 0.863 38 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 0.161 21.465 -1.669 21.530 hybrid contribution -0.748 -0.767 0.265 1.104 sum -0.587 20.697 -1.404 20.753 Atomic orbital electron populations 1.23037 0.74528 1.06722 1.05357 1.45841 1.08558 1.05506 1.57168 1.25171 0.82873 0.93583 1.05397 1.69624 1.20688 1.07700 1.17101 1.19958 0.83344 0.90088 1.28481 1.42102 1.00614 1.00415 0.97531 1.94597 1.93343 0.94394 1.54739 1.94548 1.12306 1.76467 1.53830 1.19289 0.88868 0.85965 0.97648 1.57756 1.10017 1.01874 1.50653 1.21654 0.83944 0.97171 1.00317 1.18781 1.13949 0.93783 0.94368 1.20514 0.95386 0.94500 0.95540 1.21155 1.10479 0.94525 0.99315 1.19435 0.91592 0.85013 0.93232 1.83977 1.70682 1.19071 1.33549 1.21421 1.42882 0.98960 0.83701 0.88791 1.25340 0.96270 0.95086 0.99742 1.70039 1.41567 1.07695 1.29804 0.85619 0.78567 0.79182 0.79919 1.18998 1.20042 1.19962 1.20162 1.09803 0.95354 0.95806 1.20441 0.97800 0.93049 0.96665 0.89256 0.88105 0.87104 0.75341 0.77837 0.92695 0.89084 0.87550 0.85326 0.91828 0.86278 0.87320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.14 9.20 59.85 0.55 0.69 16 2 N -0.48 -3.50 3.19 -124.65 -0.40 -3.89 16 3 C 0.22 1.60 12.60 -89.41 -1.13 0.47 16 4 N -0.43 -5.39 11.22 -11.24 -0.13 -5.51 16 5 C -0.01 -0.11 8.04 -145.13 -1.17 -1.28 16 6 N 0.08 1.26 4.46 32.78 0.15 1.41 16 7 O -0.16 -2.69 17.77 -29.46 -0.52 -3.21 16 8 O -0.16 -2.73 19.24 -29.46 -0.57 -3.29 16 9 C 0.31 3.40 7.30 -151.71 -1.11 2.30 16 10 N -0.57 -6.53 6.00 -60.98 -0.37 -6.89 16 11 C 0.09 0.91 4.02 -4.98 -0.02 0.89 16 12 C -0.21 -2.91 5.44 -104.57 -0.57 -3.48 16 13 C -0.04 -0.66 9.69 -39.61 -0.38 -1.04 16 14 C -0.24 -4.71 9.17 -39.40 -0.36 -5.07 16 15 C 0.16 3.65 6.65 -39.10 -0.26 3.39 16 16 O -0.17 -4.63 9.76 0.06 0.00 -4.63 16 17 C -0.39 -10.52 9.49 30.89 0.29 -10.22 16 18 H 0.09 2.32 5.20 -52.49 -0.27 2.04 16 19 C 0.04 1.08 5.49 -17.51 -0.10 0.98 16 20 N -0.86 -24.26 13.67 55.48 0.76 -23.51 16 21 Si 0.94 19.73 29.55 -169.99 -5.02 14.71 16 22 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 23 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 24 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 25 C -0.19 -3.67 9.99 -39.40 -0.39 -4.07 16 26 C -0.06 -0.92 9.69 -39.61 -0.38 -1.30 16 27 H 0.09 0.26 7.50 -51.93 -0.39 -0.13 16 28 H 0.10 0.03 8.12 -51.93 -0.42 -0.40 16 29 H 0.11 0.38 4.42 -51.93 -0.23 0.15 16 30 H 0.23 0.50 8.06 -52.49 -0.42 0.08 16 31 H 0.39 4.56 8.01 -39.29 -0.31 4.24 16 32 H 0.06 0.41 6.39 -51.93 -0.33 0.08 16 33 H 0.09 0.73 5.36 -51.93 -0.28 0.45 16 34 H 0.11 1.49 8.06 -52.48 -0.42 1.06 16 35 H 0.13 2.62 5.63 -52.49 -0.30 2.32 16 36 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 37 H 0.12 2.22 8.06 -52.49 -0.42 1.80 16 38 H 0.11 1.30 8.06 -52.49 -0.42 0.88 16 LS Contribution 334.15 15.07 5.04 5.04 Total: -1.00 -34.23 334.15 -9.45 -43.68 By element: Atomic # 1 Polarization: 7.21 SS G_CDS: -3.36 Total: 3.85 kcal Atomic # 6 Polarization: -12.71 SS G_CDS: -5.03 Total: -17.73 kcal Atomic # 7 Polarization: -38.41 SS G_CDS: 0.02 Total: -38.40 kcal Atomic # 8 Polarization: -10.05 SS G_CDS: -1.09 Total: -11.14 kcal Atomic # 14 Polarization: 19.73 SS G_CDS: -5.02 Total: 14.71 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -34.23 -9.45 -43.68 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000727826510.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.524 kcal (2) G-P(sol) polarization free energy of solvation -34.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.677 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds