Wall clock time and date at job start Tue Mar 31 2020 12:08:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 120.00147 * 2 1 4 4 H 1.48494 * 109.47146 * 240.00200 * 3 2 1 5 5 H 1.48503 * 109.47017 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.46918 * 120.00052 * 3 2 1 7 7 C 1.37876 * 119.99887 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99913 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99858 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.46745 * 179.97438 * 9 7 2 11 11 O 1.45196 * 109.46899 * 179.97438 * 10 9 7 12 12 C 1.34228 * 117.00045 * 180.02562 * 11 10 9 13 13 O 1.20820 * 119.99822 * 0.02562 * 12 11 10 14 14 C 1.50706 * 119.99978 * 180.02562 * 12 11 10 15 15 C 1.52999 * 109.46681 * 179.97438 * 14 12 11 16 16 C 1.50706 * 109.46681 * 180.02562 * 15 14 12 17 17 N 1.30967 * 126.44996 * 90.00270 * 16 15 14 18 18 C 1.35185 * 105.58131 * 179.97438 * 17 16 15 19 19 C 1.48553 * 126.40328 * 179.97438 * 18 17 16 20 20 N 1.32506 * 119.20895 * 359.72828 * 19 18 17 21 21 C 1.32187 * 120.75361 * 179.72235 * 20 19 18 22 22 C 1.38706 * 119.18271 * 0.53590 * 21 20 19 23 23 C 1.38709 * 118.53744 * 359.73954 * 22 21 20 24 24 N 1.32180 * 119.18636 * 359.97438 * 23 22 21 25 25 N 1.30682 * 107.19132 * 359.97438 * 18 17 16 26 26 O 1.21294 * 110.10935 * 0.02562 * 25 18 17 27 27 H 0.97002 * 119.99641 * 359.97438 * 1 2 3 28 28 H 1.08997 * 109.46812 * 60.00005 * 9 7 2 29 29 H 1.08996 * 109.46827 * 299.99434 * 9 7 2 30 30 H 1.09004 * 109.46936 * 60.00351 * 10 9 7 31 31 H 1.08993 * 109.47099 * 299.99993 * 10 9 7 32 32 H 1.09001 * 109.47059 * 59.99777 * 14 12 11 33 33 H 1.09002 * 109.47051 * 299.99909 * 14 12 11 34 34 H 1.09001 * 109.47303 * 60.00236 * 15 14 12 35 35 H 1.08989 * 109.47393 * 299.99701 * 15 14 12 36 36 H 1.07996 * 120.40815 * 180.29476 * 21 20 19 37 37 H 1.07997 * 120.72922 * 179.75195 * 22 21 20 38 38 H 1.08001 * 120.40273 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0017 10 6 2.2452 -3.6621 -0.0027 11 8 1.5192 -4.9195 -0.0033 12 6 2.2503 -6.0453 -0.0036 13 8 3.4568 -5.9821 -0.0031 14 6 1.5660 -7.3881 -0.0048 15 6 2.6198 -8.4973 -0.0057 16 6 1.9356 -9.8401 -0.0074 17 7 1.5827 -10.5322 -1.0618 18 6 1.0095 -11.6585 -0.5817 19 6 0.4422 -12.7709 -1.3863 20 7 0.4739 -12.6941 -2.7088 21 6 -0.0172 -13.6688 -3.4545 22 6 -0.5801 -14.7754 -2.8361 23 6 -0.6016 -14.8205 -1.4499 24 7 -0.0879 -13.8139 -0.7642 25 7 1.0479 -11.5856 0.7225 26 8 1.5755 -10.5492 1.0670 27 1 -0.4850 0.8401 0.0004 28 1 0.6246 -2.5562 -0.8920 29 1 0.6240 -2.5575 0.8880 30 1 2.8718 -3.6052 0.8874 31 1 2.8718 -3.6036 -0.8926 32 1 0.9436 -7.4779 -0.8951 33 1 0.9429 -7.4791 0.8849 34 1 3.2426 -8.4076 0.8844 35 1 3.2425 -8.4062 -0.8955 36 1 0.0159 -13.6025 -4.5319 37 1 -0.9923 -15.5843 -3.4210 38 1 -1.0329 -15.6675 -0.9372 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000727901825.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:08:36 Heat of formation + Delta-G solvation = 27.827033 kcal Electronic energy + Delta-G solvation = -24000.550543 eV Core-core repulsion = 20040.038144 eV Total energy + Delta-G solvation = -3960.512398 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.116 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -46.00567 -41.54398 -40.09741 -36.62558 -36.26467 -34.91627 -34.39810 -33.36743 -32.75020 -31.44434 -30.25352 -26.65058 -26.38777 -25.22501 -24.68356 -23.68405 -22.08653 -21.09009 -20.40856 -18.81313 -18.49492 -17.98511 -17.52033 -17.09145 -16.43566 -16.26307 -16.11392 -15.84235 -15.49382 -14.86905 -14.81985 -14.51237 -14.20281 -14.07494 -13.22080 -13.19999 -12.75150 -12.46036 -12.36724 -12.27385 -11.62909 -11.56500 -11.49880 -11.44467 -11.24510 -11.07737 -10.83369 -10.76115 -10.72649 -10.32320 -9.87974 -9.85722 -9.68045 -9.63915 -9.32731 -8.45052 -6.11188 -4.15875 -0.16960 0.48025 0.83381 1.84142 2.29779 2.42546 2.45917 3.06192 3.19498 3.25286 3.29845 3.34090 3.37710 3.85311 3.96333 4.12606 4.36328 4.39582 4.41532 4.43707 4.63436 4.70925 4.95995 5.12684 5.22688 5.25366 5.29469 5.37000 5.53031 5.60915 5.66988 6.05462 6.06491 6.32360 6.61008 6.92818 7.33852 7.53601 7.60532 7.72509 7.84492 8.10743 8.22810 8.89491 9.48650 11.00180 Molecular weight = 318.12amu Principal moments of inertia in cm(-1) A = 0.030904 B = 0.001732 C = 0.001692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 905.809586 B =16166.397661 C =16547.589555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.061 3.939 3 Si 0.900 3.100 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.528 4.528 8 H 0.059 0.941 9 C 0.023 3.977 10 C 0.075 3.925 11 O -0.355 6.355 12 C 0.462 3.538 13 O -0.517 6.517 14 C -0.116 4.116 15 C -0.016 4.016 16 C 0.190 3.810 17 N -0.440 5.440 18 C 0.216 3.784 19 C 0.398 3.602 20 N -0.478 5.478 21 C 0.153 3.847 22 C -0.216 4.216 23 C 0.152 3.848 24 N -0.491 5.491 25 N -0.333 5.333 26 O 0.099 5.901 27 H 0.264 0.736 28 H 0.028 0.972 29 H 0.029 0.971 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.115 0.885 33 H 0.114 0.886 34 H 0.117 0.883 35 H 0.125 0.875 36 H 0.180 0.820 37 H 0.157 0.843 38 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.993 -31.142 -4.095 31.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.141 4.141 3 Si 0.728 3.272 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.566 4.566 8 H 0.077 0.923 9 C -0.014 4.014 10 C 0.003 3.997 11 O -0.270 6.270 12 C 0.304 3.696 13 O -0.407 6.407 14 C -0.155 4.155 15 C -0.055 4.055 16 C -0.031 4.031 17 N -0.172 5.172 18 C -0.056 4.056 19 C 0.130 3.870 20 N -0.192 5.192 21 C -0.013 4.013 22 C -0.239 4.239 23 C -0.014 4.014 24 N -0.206 5.206 25 N -0.035 5.035 26 O 0.031 5.969 27 H 0.074 0.926 28 H 0.047 0.953 29 H 0.047 0.953 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.133 0.867 33 H 0.132 0.868 34 H 0.136 0.864 35 H 0.143 0.857 36 H 0.197 0.803 37 H 0.175 0.825 38 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -0.805 -30.942 -3.489 31.149 hybrid contribution 0.151 0.283 -0.540 0.628 sum -0.654 -30.659 -4.029 30.930 Atomic orbital electron populations 1.69965 1.06095 1.27119 1.49611 1.24984 0.94924 0.99399 0.94835 0.86522 0.79471 0.82452 0.78782 1.20064 1.21136 1.20063 1.20940 0.93155 0.90115 1.52417 0.92268 1.19181 0.94219 0.89029 0.98934 1.23686 0.96378 0.78552 1.01097 1.86521 1.42393 1.15830 1.82306 1.23088 0.86378 0.87178 0.72910 1.90656 1.15631 1.88365 1.46066 1.21276 0.98688 0.88241 1.07257 1.20073 0.96241 0.80898 1.08287 1.28815 0.96275 0.97988 0.80022 1.72115 1.14394 1.02846 1.27892 1.22508 1.02159 0.93971 0.86945 1.18895 0.92917 0.88965 0.86207 1.68276 1.16262 1.29100 1.05605 1.23402 0.89248 0.87476 1.01207 1.23163 1.01990 1.01368 0.97340 1.23327 0.91405 0.95226 0.91442 1.68228 1.09596 1.01192 1.41586 1.75044 1.12975 1.01277 1.14205 1.85388 1.53518 1.22120 1.35916 0.92642 0.95321 0.95306 0.92131 0.92136 0.86721 0.86820 0.86431 0.85733 0.80318 0.82533 0.80434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.15 13.29 55.43 0.74 -25.41 16 2 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 3 Si 0.90 21.22 29.54 -169.99 -5.02 16.20 16 4 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 6 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 7 C -0.53 -14.66 9.11 -34.44 -0.31 -14.97 16 8 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 9 C 0.02 0.60 5.35 -27.88 -0.15 0.45 16 10 C 0.08 1.61 5.40 37.16 0.20 1.81 16 11 O -0.35 -6.61 10.22 -39.25 -0.40 -7.01 16 12 C 0.46 6.98 7.96 36.01 0.29 7.27 16 13 O -0.52 -8.92 15.73 -18.75 -0.29 -9.21 16 14 C -0.12 -1.16 5.79 -27.88 -0.16 -1.32 16 15 C -0.02 -0.14 5.13 -27.88 -0.14 -0.28 16 16 C 0.19 1.97 7.75 -12.99 -0.10 1.87 16 17 N -0.44 -5.58 11.55 -9.90 -0.11 -5.69 16 18 C 0.22 2.85 7.99 -156.15 -1.25 1.60 16 19 C 0.40 4.82 7.60 -156.98 -1.19 3.62 16 20 N -0.48 -5.17 10.34 -11.10 -0.11 -5.29 16 21 C 0.15 0.96 11.30 -17.23 -0.19 0.76 16 22 C -0.22 -0.90 10.17 -39.23 -0.40 -1.30 16 23 C 0.15 0.92 11.30 -17.23 -0.19 0.73 16 24 N -0.49 -5.21 10.33 -11.10 -0.11 -5.33 16 25 N -0.33 -4.32 12.16 30.95 0.38 -3.95 16 26 O 0.10 1.09 11.29 18.02 0.20 1.30 16 27 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 28 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.06 1.27 8.13 -51.93 -0.42 0.85 16 31 H 0.06 1.28 8.13 -51.93 -0.42 0.86 16 32 H 0.11 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.11 0.94 8.14 -51.93 -0.42 0.51 16 34 H 0.12 0.86 8.10 -51.93 -0.42 0.44 16 35 H 0.12 1.09 8.10 -51.94 -0.42 0.67 16 36 H 0.18 0.48 8.06 -52.49 -0.42 0.06 16 37 H 0.16 0.05 8.06 -52.49 -0.42 -0.37 16 38 H 0.18 0.42 8.06 -52.49 -0.42 0.00 16 LS Contribution 351.35 15.07 5.29 5.29 Total: -1.00 -35.59 351.35 -7.34 -42.94 By element: Atomic # 1 Polarization: -1.50 SS G_CDS: -4.19 Total: -5.69 kcal Atomic # 6 Polarization: 5.56 SS G_CDS: -3.71 Total: 1.85 kcal Atomic # 7 Polarization: -46.43 SS G_CDS: 0.77 Total: -45.67 kcal Atomic # 8 Polarization: -14.43 SS G_CDS: -0.49 Total: -14.93 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -35.59 -7.34 -42.94 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000727901825.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.762 kcal (2) G-P(sol) polarization free energy of solvation -35.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.935 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds