Wall clock time and date at job start Tue Mar 31 2020 12:08:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 120.00147 * 2 1 4 4 H 1.48494 * 109.47146 * 240.00200 * 3 2 1 5 5 H 1.48503 * 109.47017 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.46918 * 120.00052 * 3 2 1 7 7 C 1.37876 * 119.99887 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99913 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99858 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.46745 * 179.97438 * 9 7 2 11 11 O 1.45196 * 109.46899 * 179.97438 * 10 9 7 12 12 C 1.34228 * 117.00045 * 180.02562 * 11 10 9 13 13 O 1.20820 * 119.99822 * 0.02562 * 12 11 10 14 14 C 1.50706 * 119.99978 * 180.02562 * 12 11 10 15 15 C 1.52999 * 109.46681 * 179.97438 * 14 12 11 16 16 C 1.50706 * 109.46681 * 180.02562 * 15 14 12 17 17 N 1.30967 * 126.44996 * 90.00270 * 16 15 14 18 18 C 1.35185 * 105.58131 * 179.97438 * 17 16 15 19 19 C 1.48553 * 126.40328 * 179.97438 * 18 17 16 20 20 N 1.32506 * 119.20895 * 359.72828 * 19 18 17 21 21 C 1.32187 * 120.75361 * 179.72235 * 20 19 18 22 22 C 1.38706 * 119.18271 * 0.53590 * 21 20 19 23 23 C 1.38709 * 118.53744 * 359.73954 * 22 21 20 24 24 N 1.32180 * 119.18636 * 359.97438 * 23 22 21 25 25 N 1.30682 * 107.19132 * 359.97438 * 18 17 16 26 26 O 1.21294 * 110.10935 * 0.02562 * 25 18 17 27 27 H 0.97002 * 119.99641 * 359.97438 * 1 2 3 28 28 H 1.08997 * 109.46812 * 60.00005 * 9 7 2 29 29 H 1.08996 * 109.46827 * 299.99434 * 9 7 2 30 30 H 1.09004 * 109.46936 * 60.00351 * 10 9 7 31 31 H 1.08993 * 109.47099 * 299.99993 * 10 9 7 32 32 H 1.09001 * 109.47059 * 59.99777 * 14 12 11 33 33 H 1.09002 * 109.47051 * 299.99909 * 14 12 11 34 34 H 1.09001 * 109.47303 * 60.00236 * 15 14 12 35 35 H 1.08989 * 109.47393 * 299.99701 * 15 14 12 36 36 H 1.07996 * 120.40815 * 180.29476 * 21 20 19 37 37 H 1.07997 * 120.72922 * 179.75195 * 22 21 20 38 38 H 1.08001 * 120.40273 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0017 10 6 2.2452 -3.6621 -0.0027 11 8 1.5192 -4.9195 -0.0033 12 6 2.2503 -6.0453 -0.0036 13 8 3.4568 -5.9821 -0.0031 14 6 1.5660 -7.3881 -0.0048 15 6 2.6198 -8.4973 -0.0057 16 6 1.9356 -9.8401 -0.0074 17 7 1.5827 -10.5322 -1.0618 18 6 1.0095 -11.6585 -0.5817 19 6 0.4422 -12.7709 -1.3863 20 7 0.4739 -12.6941 -2.7088 21 6 -0.0172 -13.6688 -3.4545 22 6 -0.5801 -14.7754 -2.8361 23 6 -0.6016 -14.8205 -1.4499 24 7 -0.0879 -13.8139 -0.7642 25 7 1.0479 -11.5856 0.7225 26 8 1.5755 -10.5492 1.0670 27 1 -0.4850 0.8401 0.0004 28 1 0.6246 -2.5562 -0.8920 29 1 0.6240 -2.5575 0.8880 30 1 2.8718 -3.6052 0.8874 31 1 2.8718 -3.6036 -0.8926 32 1 0.9436 -7.4779 -0.8951 33 1 0.9429 -7.4791 0.8849 34 1 3.2426 -8.4076 0.8844 35 1 3.2425 -8.4062 -0.8955 36 1 0.0159 -13.6025 -4.5319 37 1 -0.9923 -15.5843 -3.4210 38 1 -1.0329 -15.6675 -0.9372 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000727901825.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:08:35 Heat of formation + Delta-G solvation = 2.958221 kcal Electronic energy + Delta-G solvation = -24001.628935 eV Core-core repulsion = 20040.038144 eV Total energy + Delta-G solvation = -3961.590791 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.116 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -46.88792 -42.09261 -41.44351 -37.91037 -37.25415 -35.80091 -35.42121 -34.98109 -33.40470 -32.48725 -31.98874 -27.85161 -27.10733 -26.54265 -25.62415 -24.48877 -23.18606 -22.66402 -21.66095 -19.62664 -19.33877 -18.95022 -18.53270 -18.12162 -17.81703 -17.72380 -17.25801 -16.56641 -16.47634 -16.12380 -15.91055 -15.51706 -15.12246 -14.54679 -14.54263 -14.45451 -14.26684 -13.76336 -13.61558 -13.12470 -13.07239 -12.95555 -12.55538 -12.54691 -12.39124 -12.27030 -12.12745 -12.11904 -11.85657 -11.63240 -11.48194 -11.41592 -11.29313 -10.58613 -10.47374 -10.43686 -8.25007 -6.38095 -0.80277 0.01044 0.04357 1.03830 1.21879 1.41074 1.45047 1.46303 1.54454 1.70497 1.95576 2.41018 2.45676 2.66826 3.09542 3.17946 3.47220 3.51932 3.62906 3.79459 3.91287 3.98029 4.05528 4.19327 4.28624 4.31537 4.35660 4.48723 4.57529 4.75192 4.76031 4.79544 4.88956 5.22894 5.30843 5.50249 5.59967 5.78274 5.84807 6.08790 6.73467 6.73652 6.78059 6.92144 7.31726 8.87216 Molecular weight = 318.12amu Principal moments of inertia in cm(-1) A = 0.030904 B = 0.001732 C = 0.001692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 905.809586 B =16166.397661 C =16547.589555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.005 3.995 3 Si 0.973 3.027 4 H -0.266 1.266 5 H -0.281 1.281 6 H -0.265 1.265 7 C -0.551 4.551 8 H 0.066 0.934 9 C 0.027 3.973 10 C 0.091 3.909 11 O -0.367 6.367 12 C 0.463 3.537 13 O -0.536 6.536 14 C -0.104 4.104 15 C -0.008 4.008 16 C 0.203 3.797 17 N -0.463 5.463 18 C 0.205 3.795 19 C 0.362 3.638 20 N -0.509 5.509 21 C 0.138 3.862 22 C -0.184 4.184 23 C 0.139 3.861 24 N -0.520 5.520 25 N -0.354 5.354 26 O 0.103 5.897 27 H 0.267 0.733 28 H 0.005 0.995 29 H 0.007 0.993 30 H 0.064 0.936 31 H 0.062 0.938 32 H 0.125 0.875 33 H 0.138 0.862 34 H 0.136 0.864 35 H 0.127 0.873 36 H 0.212 0.788 37 H 0.205 0.795 38 H 0.213 0.787 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.726 -32.627 -4.844 32.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.194 4.194 3 Si 0.796 3.204 4 H -0.191 1.191 5 H -0.207 1.207 6 H -0.190 1.190 7 C -0.588 4.588 8 H 0.085 0.915 9 C -0.010 4.010 10 C 0.018 3.982 11 O -0.283 6.283 12 C 0.308 3.692 13 O -0.427 6.427 14 C -0.142 4.142 15 C -0.047 4.047 16 C -0.018 4.018 17 N -0.195 5.195 18 C -0.067 4.067 19 C 0.094 3.906 20 N -0.225 5.225 21 C -0.027 4.027 22 C -0.206 4.206 23 C -0.026 4.026 24 N -0.237 5.237 25 N -0.056 5.056 26 O 0.036 5.964 27 H 0.076 0.924 28 H 0.024 0.976 29 H 0.025 0.975 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.143 0.857 33 H 0.155 0.845 34 H 0.154 0.846 35 H 0.145 0.855 36 H 0.229 0.771 37 H 0.222 0.778 38 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -0.530 -32.461 -4.244 32.742 hybrid contribution 0.001 0.555 -0.382 0.674 sum -0.528 -31.906 -4.626 32.244 Atomic orbital electron populations 1.70092 1.07821 1.28267 1.50431 1.25964 0.95827 1.03421 0.94148 0.85384 0.78171 0.77486 0.79315 1.19072 1.20657 1.19016 1.21375 0.93778 0.91274 1.52419 0.91533 1.19003 0.94488 0.90823 0.96680 1.23153 0.94885 0.78929 1.01255 1.86505 1.42777 1.15950 1.83086 1.23942 0.86265 0.87443 0.71582 1.90650 1.16634 1.88512 1.46889 1.21327 0.98866 0.85120 1.08913 1.20108 0.95752 0.79401 1.09392 1.28989 0.95327 0.97964 0.79514 1.72101 1.15270 1.03339 1.28816 1.22950 1.02016 0.94550 0.87165 1.18878 0.95240 0.89673 0.86806 1.68220 1.17608 1.31251 1.05455 1.24120 0.88752 0.87287 1.02524 1.23658 0.98937 1.01243 0.96754 1.24079 0.90775 0.94994 0.92762 1.68191 1.10530 1.02013 1.42934 1.75007 1.14039 1.02080 1.14517 1.85355 1.53375 1.21856 1.35861 0.92412 0.97632 0.97487 0.91803 0.92009 0.85655 0.84458 0.84608 0.85494 0.77106 0.77771 0.77006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.31 13.29 21.45 0.28 -55.03 16 2 C 0.01 0.30 5.46 84.65 0.46 0.77 16 3 Si 0.97 43.29 29.54 68.60 2.03 45.32 16 4 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 5 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 6 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 7 C -0.55 -30.86 9.11 25.60 0.23 -30.63 16 8 H 0.07 3.54 7.74 -2.91 -0.02 3.52 16 9 C 0.03 1.44 5.35 29.85 0.16 1.60 16 10 C 0.09 3.91 5.40 71.98 0.39 4.30 16 11 O -0.37 -13.60 10.22 -51.40 -0.53 -14.13 16 12 C 0.46 13.54 7.96 71.24 0.57 14.11 16 13 O -0.54 -17.94 15.73 21.98 0.35 -17.59 16 14 C -0.10 -1.91 5.79 29.85 0.17 -1.74 16 15 C -0.01 -0.13 5.13 29.85 0.15 0.03 16 16 C 0.20 4.11 7.75 88.36 0.68 4.80 16 17 N -0.46 -11.88 11.55 -302.64 -3.50 -15.38 16 18 C 0.20 5.58 7.99 137.37 1.10 6.68 16 19 C 0.36 8.96 7.60 137.66 1.05 10.00 16 20 N -0.51 -10.99 10.34 -189.04 -1.95 -12.95 16 21 C 0.14 1.46 11.30 84.75 0.96 2.42 16 22 C -0.18 -0.95 10.17 22.49 0.23 -0.72 16 23 C 0.14 1.41 11.30 84.75 0.96 2.36 16 24 N -0.52 -11.01 10.33 -189.04 -1.95 -12.96 16 25 N -0.35 -9.42 12.16 -59.27 -0.72 -10.14 16 26 O 0.10 2.28 11.29 74.56 0.84 3.12 16 27 H 0.27 14.93 8.31 -92.71 -0.77 14.16 16 28 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 29 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 30 H 0.06 2.68 8.13 -2.38 -0.02 2.66 16 31 H 0.06 2.62 8.13 -2.39 -0.02 2.60 16 32 H 0.13 2.14 8.14 -2.39 -0.02 2.12 16 33 H 0.14 1.96 8.14 -2.39 -0.02 1.94 16 34 H 0.14 1.73 8.10 -2.39 -0.02 1.71 16 35 H 0.13 2.05 8.10 -2.39 -0.02 2.03 16 36 H 0.21 0.55 8.06 -2.91 -0.02 0.53 16 37 H 0.21 -0.98 8.06 -2.91 -0.02 -1.00 16 38 H 0.21 0.37 8.06 -2.91 -0.02 0.35 16 Total: -1.00 -80.36 351.35 3.06 -77.30 By element: Atomic # 1 Polarization: -2.64 SS G_CDS: 1.10 Total: -1.54 kcal Atomic # 6 Polarization: 6.87 SS G_CDS: 7.11 Total: 13.98 kcal Atomic # 7 Polarization: -98.61 SS G_CDS: -7.84 Total: -106.45 kcal Atomic # 8 Polarization: -29.26 SS G_CDS: 0.66 Total: -28.60 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.32 kcal Total: -80.36 3.06 -77.30 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000727901825.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.256 kcal (2) G-P(sol) polarization free energy of solvation -80.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.297 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds