Wall clock time and date at job start Tue Mar 31 2020 12:11:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 120.00010 * 2 1 4 4 H 1.48504 * 109.47155 * 270.00579 * 3 2 1 5 5 H 1.48504 * 109.47016 * 30.00024 * 3 2 1 6 6 H 1.48497 * 109.47175 * 150.00195 * 3 2 1 7 7 C 1.37877 * 120.00191 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99681 * 359.97438 * 7 2 1 9 9 C 1.50703 * 119.99994 * 179.97438 * 7 2 1 10 10 C 1.52995 * 109.47003 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47123 * 180.02562 * 10 9 7 12 12 O 1.45198 * 109.47372 * 180.02562 * 11 10 9 13 13 C 1.34230 * 117.00173 * 180.02562 * 12 11 10 14 14 O 1.20818 * 119.99983 * 0.27497 * 13 12 11 15 15 C 1.50706 * 119.99763 * 179.97438 * 13 12 11 16 16 C 1.52999 * 109.46573 * 179.97438 * 15 13 12 17 17 C 1.53006 * 109.46997 * 180.02562 * 16 15 13 18 18 C 1.52993 * 109.47481 * 180.02562 * 17 16 15 19 19 C 1.52996 * 109.47476 * 179.97438 * 18 17 16 20 20 H 1.08996 * 109.58256 * 306.16670 * 19 18 17 21 21 C 1.52964 * 109.59164 * 186.07876 * 19 18 17 22 22 C 1.54180 * 113.44558 * 206.63815 * 21 19 18 23 23 S 1.84228 * 103.82474 * 49.63905 * 22 21 19 24 24 S 1.83031 * 109.58888 * 66.45013 * 19 18 17 25 25 H 0.96993 * 119.99994 * 359.97438 * 1 2 3 26 26 H 1.09006 * 109.46554 * 60.00162 * 9 7 2 27 27 H 1.08998 * 109.47254 * 300.00237 * 9 7 2 28 28 H 1.08997 * 109.47391 * 60.00415 * 10 9 7 29 29 H 1.08998 * 109.47405 * 300.00262 * 10 9 7 30 30 H 1.09003 * 109.46945 * 60.00578 * 11 10 9 31 31 H 1.08998 * 109.47020 * 300.00285 * 11 10 9 32 32 H 1.09000 * 109.47161 * 299.99883 * 15 13 12 33 33 H 1.09001 * 109.46740 * 60.00026 * 15 13 12 34 34 H 1.09000 * 109.47486 * 299.99934 * 16 15 13 35 35 H 1.09001 * 109.47362 * 60.00657 * 16 15 13 36 36 H 1.09000 * 109.46866 * 300.00212 * 17 16 15 37 37 H 1.08996 * 109.47261 * 59.99820 * 17 16 15 38 38 H 1.09004 * 109.46672 * 300.00239 * 18 17 16 39 39 H 1.08996 * 109.47340 * 59.99477 * 18 17 16 40 40 H 1.09003 * 108.69784 * 327.67997 * 21 19 18 41 41 H 1.09004 * 108.69984 * 85.59480 * 21 19 18 42 42 H 1.08996 * 110.55380 * 291.05660 * 22 21 19 43 43 H 1.09002 * 110.67910 * 168.28637 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 -0.0011 10 6 4.0216 -2.6364 -0.0010 11 6 5.5516 -2.6364 -0.0009 12 8 6.0357 -4.0053 -0.0014 13 6 7.3664 -4.1811 -0.0009 14 8 8.1024 -3.2230 0.0049 15 6 7.9424 -5.5738 -0.0008 16 6 9.4703 -5.4936 -0.0008 17 6 10.0552 -6.9074 -0.0014 18 6 11.5830 -6.8274 -0.0007 19 6 12.1679 -8.2411 -0.0006 20 1 11.7472 -8.8104 0.8282 21 6 13.6881 -8.1673 0.1526 22 6 14.4258 -9.3738 -0.4615 23 16 13.7099 -9.5131 -2.1533 24 16 11.7665 -9.0714 -1.5816 25 1 -0.4850 0.8400 0.0004 26 1 3.8752 -0.6803 0.8889 27 1 3.8746 -0.6799 -0.8911 28 1 3.6580 -3.1505 -0.8907 29 1 3.6586 -3.1501 0.8892 30 1 5.9149 -2.1226 0.8891 31 1 5.9149 -2.1226 -0.8909 32 1 7.6061 -6.1060 0.8890 33 1 7.6068 -6.1058 -0.8910 34 1 9.8063 -4.9615 -0.8909 35 1 9.8063 -4.9614 0.8892 36 1 9.7193 -7.4399 0.8884 37 1 9.7193 -7.4393 -0.8915 38 1 11.9192 -6.2947 -0.8903 39 1 11.9187 -6.2956 0.8896 40 1 14.0442 -7.2573 -0.3303 41 1 13.9301 -8.1131 1.2140 42 1 14.2264 -10.2777 0.1140 43 1 15.4978 -9.1835 -0.5141 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000733866229.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:11:52 Heat of formation + Delta-G solvation = -121.707184 kcal Electronic energy + Delta-G solvation = -20768.873511 eV Core-core repulsion = 17451.321237 eV Total energy + Delta-G solvation = -3317.552274 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.111 amu Computer time = 2.33 seconds Orbital eigenvalues (eV) -40.33098 -37.64120 -36.63630 -34.94685 -34.07750 -31.96652 -31.56128 -28.25717 -27.21972 -24.38330 -22.93138 -22.30146 -21.60237 -20.59055 -20.11463 -19.25866 -17.45176 -17.06809 -16.86581 -16.60522 -16.20590 -15.89822 -15.51865 -15.04704 -14.49855 -14.26684 -14.18633 -13.59867 -13.43410 -13.13173 -12.90672 -12.79003 -12.62883 -12.39209 -12.05429 -11.92256 -11.82441 -11.55456 -11.51255 -11.18185 -11.06295 -11.03473 -10.95667 -10.76276 -10.55106 -10.42965 -10.05896 -9.99360 -9.80141 -9.72509 -9.25537 -8.57435 -7.73989 -6.07664 -4.06752 -1.00951 0.73915 1.54522 2.29231 2.81915 3.29247 3.36820 3.40218 3.51981 3.81327 4.05548 4.27642 4.39082 4.42318 4.49163 4.56271 4.69213 4.79378 4.80598 4.96048 5.06213 5.07758 5.20896 5.25620 5.33684 5.35662 5.42141 5.46178 5.49690 5.61489 5.84353 5.86543 5.96812 6.36384 6.38512 6.67865 6.81089 7.20562 7.31783 7.71844 7.88688 8.49165 8.96612 9.53848 11.05501 Molecular weight = 318.11amu Principal moments of inertia in cm(-1) A = 0.046098 B = 0.001511 C = 0.001494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 607.259253 B =18522.973261 C =18741.618682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.068 3.932 3 Si 0.879 3.121 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.265 1.265 7 C -0.522 4.522 8 H 0.074 0.926 9 C -0.011 4.011 10 C -0.102 4.102 11 C 0.066 3.934 12 O -0.358 6.358 13 C 0.456 3.544 14 O -0.516 6.516 15 C -0.115 4.115 16 C -0.107 4.107 17 C -0.121 4.121 18 C -0.105 4.105 19 C -0.046 4.046 20 H 0.113 0.887 21 C -0.134 4.134 22 C -0.069 4.069 23 S -0.198 6.198 24 S -0.165 6.165 25 H 0.264 0.736 26 H 0.019 0.981 27 H 0.015 0.985 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.104 0.896 33 H 0.105 0.895 34 H 0.074 0.926 35 H 0.073 0.927 36 H 0.068 0.932 37 H 0.072 0.928 38 H 0.081 0.919 39 H 0.082 0.918 40 H 0.092 0.908 41 H 0.106 0.894 42 H 0.102 0.898 43 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 31.768 -20.546 2.171 37.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.134 4.134 3 Si 0.706 3.294 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.190 1.190 7 C -0.560 4.560 8 H 0.092 0.908 9 C -0.048 4.048 10 C -0.140 4.140 11 C -0.007 4.007 12 O -0.274 6.274 13 C 0.299 3.701 14 O -0.405 6.405 15 C -0.153 4.153 16 C -0.144 4.144 17 C -0.159 4.159 18 C -0.144 4.144 19 C -0.176 4.176 20 H 0.131 0.869 21 C -0.176 4.176 22 C -0.219 4.219 23 S -0.081 6.081 24 S -0.049 6.049 25 H 0.074 0.926 26 H 0.037 0.963 27 H 0.033 0.967 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.122 0.878 33 H 0.123 0.877 34 H 0.093 0.907 35 H 0.092 0.908 36 H 0.086 0.914 37 H 0.091 0.909 38 H 0.099 0.901 39 H 0.100 0.900 40 H 0.110 0.890 41 H 0.124 0.876 42 H 0.121 0.879 43 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 31.236 -20.631 0.498 37.438 hybrid contribution 0.867 1.465 1.477 2.254 sum 32.103 -19.166 1.975 37.441 Atomic orbital electron populations 1.69906 1.06275 1.26977 1.50839 1.25013 0.94752 0.99156 0.94444 0.86786 0.80372 0.83598 0.78608 1.20200 1.21255 1.19002 1.21064 0.89058 0.94686 1.51227 0.90783 1.19522 0.97533 0.91112 0.96657 1.21559 0.88815 1.00760 1.02818 1.23480 0.97057 0.78194 1.02010 1.86506 1.23582 1.34216 1.83112 1.23692 0.81309 0.92593 0.72499 1.90648 1.60715 1.43409 1.45688 1.21400 0.96366 0.91610 1.05908 1.21392 0.92348 0.96631 1.04059 1.21667 0.94164 0.97247 1.02858 1.21758 0.96064 0.92689 1.03934 1.24070 0.97475 1.00678 0.95407 0.86914 1.22499 0.91778 0.99178 1.04160 1.24624 1.03956 1.01745 0.91592 1.90130 1.08553 1.93658 1.15793 1.89940 1.08130 1.75583 1.31240 0.92639 0.96303 0.96715 0.91533 0.91532 0.91596 0.91593 0.87757 0.87694 0.90726 0.90847 0.91357 0.90917 0.90061 0.89985 0.88983 0.87607 0.87923 0.85552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 50. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.78 13.96 55.43 0.77 -27.01 16 2 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 3 Si 0.88 21.73 27.47 -169.99 -4.67 17.06 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.27 -6.31 6.54 56.52 0.37 -5.94 16 7 C -0.52 -14.92 9.66 -34.44 -0.33 -15.26 16 8 H 0.07 2.26 7.99 -52.49 -0.42 1.84 16 9 C -0.01 -0.26 4.04 -27.88 -0.11 -0.37 16 10 C -0.10 -2.04 5.53 -26.73 -0.15 -2.19 16 11 C 0.07 1.15 5.47 37.16 0.20 1.35 16 12 O -0.36 -5.70 10.22 -39.26 -0.40 -6.10 16 13 C 0.46 6.35 7.96 36.01 0.29 6.64 16 14 O -0.52 -8.58 15.73 -18.74 -0.29 -8.87 16 15 C -0.12 -1.02 5.81 -27.88 -0.16 -1.19 16 16 C -0.11 -0.83 4.50 -26.73 -0.12 -0.95 16 17 C -0.12 -0.68 5.06 -26.73 -0.14 -0.82 16 18 C -0.10 -0.48 4.51 -26.74 -0.12 -0.61 16 19 C -0.05 -0.20 3.06 -26.75 -0.08 -0.28 16 20 H 0.11 0.38 8.14 -51.93 -0.42 -0.04 16 21 C -0.13 -0.36 5.41 -26.13 -0.14 -0.50 16 22 C -0.07 -0.23 7.24 37.77 0.27 0.05 16 23 S -0.20 -1.53 23.47 -89.81 -2.11 -3.63 16 24 S -0.17 -1.31 21.88 -89.81 -1.97 -3.27 16 25 H 0.26 7.59 8.31 -40.82 -0.34 7.26 16 26 H 0.02 0.44 7.20 -51.93 -0.37 0.07 16 27 H 0.01 0.34 7.57 -51.93 -0.39 -0.05 16 28 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 29 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 30 H 0.07 1.14 8.13 -51.93 -0.42 0.72 16 31 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 32 H 0.10 0.75 8.14 -51.93 -0.42 0.32 16 33 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.07 0.66 8.10 -51.93 -0.42 0.24 16 35 H 0.07 0.60 8.10 -51.93 -0.42 0.18 16 36 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 37 H 0.07 0.48 7.22 -51.93 -0.37 0.10 16 38 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 39 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 40 H 0.09 0.28 7.84 -51.93 -0.41 -0.13 16 41 H 0.11 0.06 8.14 -51.93 -0.42 -0.36 16 42 H 0.10 0.25 8.14 -51.93 -0.42 -0.17 16 43 H 0.13 0.20 8.14 -51.93 -0.42 -0.23 16 LS Contribution 375.35 15.07 5.66 5.66 Total: -1.00 -33.62 375.35 -11.17 -44.79 By element: Atomic # 1 Polarization: 1.08 SS G_CDS: -7.47 Total: -6.40 kcal Atomic # 6 Polarization: -11.54 SS G_CDS: -0.69 Total: -12.23 kcal Atomic # 7 Polarization: -27.78 SS G_CDS: 0.77 Total: -27.01 kcal Atomic # 8 Polarization: -14.28 SS G_CDS: -0.70 Total: -14.97 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -4.67 Total: 17.06 kcal Atomic # 16 Polarization: -2.83 SS G_CDS: -4.07 Total: -6.91 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -33.62 -11.17 -44.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733866229.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.915 kcal (2) G-P(sol) polarization free energy of solvation -33.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.33 seconds