Wall clock time and date at job start Tue Mar 31 2020 12:11:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 120.00010 * 2 1 4 4 H 1.48504 * 109.47155 * 270.00579 * 3 2 1 5 5 H 1.48504 * 109.47016 * 30.00024 * 3 2 1 6 6 H 1.48497 * 109.47175 * 150.00195 * 3 2 1 7 7 C 1.37877 * 120.00191 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99681 * 359.97438 * 7 2 1 9 9 C 1.50703 * 119.99994 * 179.97438 * 7 2 1 10 10 C 1.52995 * 109.47003 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47123 * 180.02562 * 10 9 7 12 12 O 1.45198 * 109.47372 * 180.02562 * 11 10 9 13 13 C 1.34230 * 117.00173 * 180.02562 * 12 11 10 14 14 O 1.20818 * 119.99983 * 0.27497 * 13 12 11 15 15 C 1.50706 * 119.99763 * 179.97438 * 13 12 11 16 16 C 1.52999 * 109.46573 * 179.97438 * 15 13 12 17 17 C 1.53006 * 109.46997 * 180.02562 * 16 15 13 18 18 C 1.52993 * 109.47481 * 180.02562 * 17 16 15 19 19 C 1.52996 * 109.47476 * 179.97438 * 18 17 16 20 20 H 1.08996 * 109.58256 * 306.16670 * 19 18 17 21 21 C 1.52964 * 109.59164 * 186.07876 * 19 18 17 22 22 C 1.54180 * 113.44558 * 206.63815 * 21 19 18 23 23 S 1.84228 * 103.82474 * 49.63905 * 22 21 19 24 24 S 1.83031 * 109.58888 * 66.45013 * 19 18 17 25 25 H 0.96993 * 119.99994 * 359.97438 * 1 2 3 26 26 H 1.09006 * 109.46554 * 60.00162 * 9 7 2 27 27 H 1.08998 * 109.47254 * 300.00237 * 9 7 2 28 28 H 1.08997 * 109.47391 * 60.00415 * 10 9 7 29 29 H 1.08998 * 109.47405 * 300.00262 * 10 9 7 30 30 H 1.09003 * 109.46945 * 60.00578 * 11 10 9 31 31 H 1.08998 * 109.47020 * 300.00285 * 11 10 9 32 32 H 1.09000 * 109.47161 * 299.99883 * 15 13 12 33 33 H 1.09001 * 109.46740 * 60.00026 * 15 13 12 34 34 H 1.09000 * 109.47486 * 299.99934 * 16 15 13 35 35 H 1.09001 * 109.47362 * 60.00657 * 16 15 13 36 36 H 1.09000 * 109.46866 * 300.00212 * 17 16 15 37 37 H 1.08996 * 109.47261 * 59.99820 * 17 16 15 38 38 H 1.09004 * 109.46672 * 300.00239 * 18 17 16 39 39 H 1.08996 * 109.47340 * 59.99477 * 18 17 16 40 40 H 1.09003 * 108.69784 * 327.67997 * 21 19 18 41 41 H 1.09004 * 108.69984 * 85.59480 * 21 19 18 42 42 H 1.08996 * 110.55380 * 291.05660 * 22 21 19 43 43 H 1.09002 * 110.67910 * 168.28637 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 -0.0011 10 6 4.0216 -2.6364 -0.0010 11 6 5.5516 -2.6364 -0.0009 12 8 6.0357 -4.0053 -0.0014 13 6 7.3664 -4.1811 -0.0009 14 8 8.1024 -3.2230 0.0049 15 6 7.9424 -5.5738 -0.0008 16 6 9.4703 -5.4936 -0.0008 17 6 10.0552 -6.9074 -0.0014 18 6 11.5830 -6.8274 -0.0007 19 6 12.1679 -8.2411 -0.0006 20 1 11.7472 -8.8104 0.8282 21 6 13.6881 -8.1673 0.1526 22 6 14.4258 -9.3738 -0.4615 23 16 13.7099 -9.5131 -2.1533 24 16 11.7665 -9.0714 -1.5816 25 1 -0.4850 0.8400 0.0004 26 1 3.8752 -0.6803 0.8889 27 1 3.8746 -0.6799 -0.8911 28 1 3.6580 -3.1505 -0.8907 29 1 3.6586 -3.1501 0.8892 30 1 5.9149 -2.1226 0.8891 31 1 5.9149 -2.1226 -0.8909 32 1 7.6061 -6.1060 0.8890 33 1 7.6068 -6.1058 -0.8910 34 1 9.8063 -4.9615 -0.8909 35 1 9.8063 -4.9614 0.8892 36 1 9.7193 -7.4399 0.8884 37 1 9.7193 -7.4393 -0.8915 38 1 11.9192 -6.2947 -0.8903 39 1 11.9187 -6.2956 0.8896 40 1 14.0442 -7.2573 -0.3303 41 1 13.9301 -8.1131 1.2140 42 1 14.2264 -10.2777 0.1140 43 1 15.4978 -9.1835 -0.5141 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000733866229.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:11:51 Heat of formation + Delta-G solvation = -138.356277 kcal Electronic energy + Delta-G solvation = -20769.595470 eV Core-core repulsion = 17451.321237 eV Total energy + Delta-G solvation = -3318.274233 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.111 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.50045 -38.23782 -37.65791 -35.93744 -35.47887 -33.88769 -32.18991 -29.62285 -28.20479 -25.35638 -24.22548 -22.68585 -22.20659 -22.06552 -21.36566 -19.73009 -19.02530 -18.54170 -17.91044 -17.32742 -17.20399 -16.53981 -16.29862 -16.25782 -15.60290 -15.28076 -14.85263 -14.83224 -14.42980 -14.23153 -13.84774 -13.76766 -13.70193 -13.29511 -13.20075 -12.86251 -12.59986 -12.55859 -12.28029 -12.12598 -12.04505 -12.00947 -11.98494 -11.77458 -11.69660 -11.47212 -11.41701 -11.37421 -11.31861 -11.20677 -10.78734 -10.56370 -8.31344 -8.30381 -6.36594 -1.55008 0.44091 1.18487 1.19737 1.36042 1.37373 1.49253 1.71677 2.34676 3.03734 3.23091 3.54262 3.65094 3.81995 3.90199 3.97790 4.01268 4.02825 4.12733 4.18927 4.36749 4.40551 4.48921 4.57886 4.61899 4.70012 4.72641 4.74373 4.80367 4.87515 4.93423 4.94535 4.95911 5.15796 5.33641 5.34703 5.43387 5.47161 5.55168 5.62339 6.24516 6.69859 6.74644 7.28043 8.85204 Molecular weight = 318.11amu Principal moments of inertia in cm(-1) A = 0.046098 B = 0.001511 C = 0.001494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 607.259253 B =18522.973261 C =18741.618682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C 0.006 3.994 3 Si 0.950 3.050 4 H -0.266 1.266 5 H -0.282 1.282 6 H -0.246 1.246 7 C -0.536 4.536 8 H 0.035 0.965 9 C -0.009 4.009 10 C -0.093 4.093 11 C 0.074 3.926 12 O -0.364 6.364 13 C 0.453 3.547 14 O -0.545 6.545 15 C -0.109 4.109 16 C -0.101 4.101 17 C -0.114 4.114 18 C -0.102 4.102 19 C -0.031 4.031 20 H 0.130 0.870 21 C -0.132 4.132 22 C -0.052 4.052 23 S -0.260 6.260 24 S -0.219 6.219 25 H 0.267 0.733 26 H 0.026 0.974 27 H 0.023 0.977 28 H 0.062 0.938 29 H 0.063 0.937 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.130 0.870 33 H 0.120 0.880 34 H 0.057 0.943 35 H 0.071 0.929 36 H 0.085 0.915 37 H 0.061 0.939 38 H 0.067 0.933 39 H 0.102 0.898 40 H 0.089 0.911 41 H 0.141 0.859 42 H 0.115 0.885 43 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 34.503 -20.484 3.798 40.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.191 4.191 3 Si 0.773 3.227 4 H -0.191 1.191 5 H -0.208 1.208 6 H -0.170 1.170 7 C -0.574 4.574 8 H 0.054 0.946 9 C -0.047 4.047 10 C -0.131 4.131 11 C 0.001 3.999 12 O -0.280 6.280 13 C 0.298 3.702 14 O -0.435 6.435 15 C -0.146 4.146 16 C -0.139 4.139 17 C -0.152 4.152 18 C -0.142 4.142 19 C -0.161 4.161 20 H 0.148 0.852 21 C -0.174 4.174 22 C -0.200 4.200 23 S -0.143 6.143 24 S -0.102 6.102 25 H 0.076 0.924 26 H 0.044 0.956 27 H 0.042 0.958 28 H 0.080 0.920 29 H 0.082 0.918 30 H 0.088 0.912 31 H 0.086 0.914 32 H 0.148 0.852 33 H 0.138 0.862 34 H 0.076 0.924 35 H 0.090 0.910 36 H 0.103 0.897 37 H 0.080 0.920 38 H 0.085 0.915 39 H 0.120 0.880 40 H 0.107 0.893 41 H 0.158 0.842 42 H 0.133 0.867 43 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 33.990 -20.600 2.121 39.802 hybrid contribution 0.006 1.359 1.018 1.698 sum 33.996 -19.241 3.139 39.189 Atomic orbital electron populations 1.70058 1.08279 1.28278 1.52302 1.26002 0.95637 1.03509 0.93957 0.85662 0.79532 0.78206 0.79290 1.19130 1.20761 1.16966 1.21415 0.91729 0.93397 1.50889 0.94649 1.19450 0.94313 0.93765 0.97161 1.21323 0.90897 0.98341 1.02529 1.23136 0.95078 0.79405 1.02310 1.86506 1.25147 1.32918 1.83474 1.24706 0.80157 0.94237 0.71089 1.90635 1.60957 1.44812 1.47099 1.21597 0.96759 0.88493 1.07748 1.21352 0.91548 0.97812 1.03169 1.21607 0.94826 0.95678 1.03135 1.21727 0.95299 0.92934 1.04197 1.24225 0.98781 0.99994 0.93112 0.85228 1.22543 0.90221 0.98626 1.06015 1.24841 1.04663 1.02673 0.87865 1.90265 1.09295 1.93911 1.20852 1.90057 1.09117 1.76830 1.34211 0.92370 0.95598 0.95824 0.91962 0.91813 0.91221 0.91399 0.85245 0.86211 0.92384 0.91032 0.89665 0.92002 0.91461 0.87964 0.89270 0.84152 0.86665 0.83462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.66 13.96 21.45 0.30 -59.36 16 2 C 0.01 0.36 5.47 84.65 0.46 0.82 16 3 Si 0.95 44.22 27.47 68.60 1.88 46.10 16 4 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 5 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 6 H -0.25 -10.62 6.54 99.48 0.65 -9.97 16 7 C -0.54 -31.12 9.66 25.60 0.25 -30.88 16 8 H 0.04 2.25 7.99 -2.91 -0.02 2.22 16 9 C -0.01 -0.44 4.04 29.85 0.12 -0.32 16 10 C -0.09 -3.68 5.53 30.59 0.17 -3.51 16 11 C 0.07 2.50 5.47 71.98 0.39 2.90 16 12 O -0.36 -11.06 10.22 -51.41 -0.53 -11.58 16 13 C 0.45 11.91 7.96 71.24 0.57 12.48 16 14 O -0.54 -17.48 15.73 21.99 0.35 -17.14 16 15 C -0.11 -1.68 5.81 29.85 0.17 -1.51 16 16 C -0.10 -1.38 4.50 30.60 0.14 -1.24 16 17 C -0.11 -1.03 5.06 30.59 0.15 -0.88 16 18 C -0.10 -0.71 4.51 30.59 0.14 -0.57 16 19 C -0.03 -0.20 3.06 30.58 0.09 -0.10 16 20 H 0.13 0.42 8.14 -2.39 -0.02 0.40 16 21 C -0.13 -0.29 5.41 30.98 0.17 -0.12 16 22 C -0.05 -0.21 7.24 72.38 0.52 0.31 16 23 S -0.26 -3.99 23.47 -20.29 -0.48 -4.46 16 24 S -0.22 -3.40 21.88 -20.29 -0.44 -3.85 16 25 H 0.27 15.63 8.31 -92.71 -0.77 14.86 16 26 H 0.03 1.17 7.20 -2.38 -0.02 1.16 16 27 H 0.02 1.06 7.57 -2.39 -0.02 1.04 16 28 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16 29 H 0.06 2.52 8.14 -2.39 -0.02 2.50 16 30 H 0.07 2.30 8.13 -2.39 -0.02 2.28 16 31 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 32 H 0.13 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.12 1.56 8.14 -2.39 -0.02 1.54 16 34 H 0.06 0.98 8.10 -2.39 -0.02 0.97 16 35 H 0.07 1.01 8.10 -2.39 -0.02 1.00 16 36 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 37 H 0.06 0.73 7.22 -2.39 -0.02 0.71 16 38 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 39 H 0.10 0.35 8.14 -2.39 -0.02 0.33 16 40 H 0.09 0.30 7.84 -2.39 -0.02 0.28 16 41 H 0.14 -0.54 8.14 -2.39 -0.02 -0.56 16 42 H 0.11 0.22 8.14 -2.39 -0.02 0.21 16 43 H 0.15 0.02 8.14 -2.39 -0.02 0.00 16 Total: -1.00 -75.38 375.35 5.34 -70.03 By element: Atomic # 1 Polarization: 1.97 SS G_CDS: 0.91 Total: 2.88 kcal Atomic # 6 Polarization: -25.97 SS G_CDS: 3.35 Total: -22.62 kcal Atomic # 7 Polarization: -59.66 SS G_CDS: 0.30 Total: -59.36 kcal Atomic # 8 Polarization: -28.54 SS G_CDS: -0.18 Total: -28.72 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 1.88 Total: 46.10 kcal Atomic # 16 Polarization: -7.39 SS G_CDS: -0.92 Total: -8.31 kcal Total: -75.38 5.34 -70.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733866229.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.322 kcal (2) G-P(sol) polarization free energy of solvation -75.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds