Wall clock time and date at job start Tue Mar 31 2020 12:41:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08994 * 109.47029 * 2 1 4 4 C 1.50699 * 109.47165 * 239.99918 * 2 1 3 5 5 H 1.08004 * 120.00135 * 239.99800 * 4 2 1 6 6 C 1.37879 * 120.00178 * 60.00108 * 4 2 1 7 7 N 1.31521 * 119.99739 * 0.02562 * 6 4 2 8 8 Si 1.86795 * 120.00248 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46928 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.46860 * 119.99958 * 8 6 4 11 11 H 1.48495 * 109.47371 * 240.00422 * 8 6 4 12 12 O 1.45200 * 109.46743 * 120.00160 * 2 1 3 13 13 C 1.34231 * 116.99825 * 269.99673 * 12 2 1 14 14 O 1.20827 * 119.99791 * 0.02562 * 13 12 2 15 15 C 1.50701 * 120.00051 * 180.02562 * 13 12 2 16 16 O 1.42897 * 109.46987 * 180.02562 * 15 13 12 17 17 C 1.35871 * 116.99997 * 180.02562 * 16 15 13 18 18 C 1.38830 * 119.93748 * 180.02562 * 17 16 15 19 19 C 1.37922 * 120.05800 * 179.97438 * 18 17 16 20 20 C 1.39342 * 119.93625 * 0.02562 * 19 18 17 21 21 C 1.48438 * 120.05864 * 179.97438 * 20 19 18 22 22 N 1.34059 * 126.67514 * 0.02562 * 21 20 19 23 23 N 1.28984 * 107.26645 * 179.97438 * 22 21 20 24 24 N 1.28723 * 108.94564 * 359.97438 * 23 22 21 25 25 H 0.97004 * 125.33488 * 179.97438 * 24 23 22 26 26 N 1.28872 * 109.32698 * 359.97438 * 24 23 22 27 27 C 1.39334 * 119.88215 * 0.24816 * 20 19 18 28 28 C 1.37923 * 119.93655 * 359.51453 * 27 20 19 29 29 H 1.08990 * 109.47087 * 300.00161 * 1 2 3 30 30 H 1.09010 * 109.46893 * 60.00377 * 1 2 3 31 31 H 1.09001 * 109.46910 * 179.97438 * 1 2 3 32 32 H 0.96999 * 119.99408 * 180.02562 * 7 6 4 33 33 H 1.09003 * 109.46482 * 60.00735 * 15 13 12 34 34 H 1.08994 * 109.47274 * 300.00270 * 15 13 12 35 35 H 1.07997 * 119.97109 * 359.97438 * 18 17 16 36 36 H 1.07999 * 120.02831 * 180.02562 * 19 18 17 37 37 H 1.07999 * 120.03549 * 179.72676 * 27 20 19 38 38 H 1.07997 * 119.96873 * 180.23241 * 28 27 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1314 6 6 1.6993 -0.2394 -2.4828 7 7 0.9436 0.8302 -2.6034 8 14 2.3226 -1.1195 -4.0079 9 1 3.1474 -2.2863 -3.6037 10 1 1.1678 -1.5866 -4.8165 11 1 3.1474 -0.1859 -4.8160 12 8 2.0139 -0.6845 1.1856 13 6 2.2171 0.0640 2.2811 14 8 1.9974 1.2517 2.2505 15 6 2.7192 -0.5771 3.5492 16 8 2.8536 0.4186 4.5654 17 6 3.2997 0.0041 5.7800 18 6 3.4524 0.9204 6.8116 19 6 3.9045 0.5023 8.0457 20 6 4.2086 -0.8411 8.2563 21 6 4.6960 -1.2940 9.5832 22 7 4.8916 -0.5306 10.6677 23 7 5.3173 -1.3036 11.6084 24 7 5.3936 -2.5070 11.1579 25 1 5.6872 -3.2789 11.6668 26 7 5.0187 -2.5256 9.9251 27 6 4.0599 -1.7576 7.2174 28 6 3.6027 -1.3348 5.9867 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 0.7090 1.1614 -3.4845 33 1 3.6884 -1.0399 3.3631 34 1 2.0104 -1.3372 3.8774 35 1 3.2169 1.9616 6.6477 36 1 4.0227 1.2155 8.8481 37 1 4.2990 -2.7987 7.3766 38 1 3.4836 -2.0454 5.1822 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000735963589.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:41:06 Heat of formation + Delta-G solvation = 28.271431 kcal Electronic energy + Delta-G solvation = -24516.983331 eV Core-core repulsion = 20556.490203 eV Total energy + Delta-G solvation = -3960.493128 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.116 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -44.75636 -40.55062 -39.46553 -37.78847 -35.74122 -34.63332 -33.67133 -33.34433 -31.46814 -30.47653 -29.77733 -28.29750 -25.37848 -25.09968 -24.44243 -23.07488 -22.00561 -21.48036 -19.85196 -19.46083 -18.54683 -17.44882 -17.17802 -16.82761 -16.55928 -16.33200 -16.04081 -15.17356 -14.81583 -14.72381 -14.46008 -14.14909 -13.70165 -13.33907 -13.15862 -12.99013 -12.76607 -12.29063 -12.22964 -11.97199 -11.73750 -11.59103 -11.52962 -11.26312 -11.13390 -11.08987 -10.90360 -10.72640 -10.42520 -10.33249 -9.75682 -9.63132 -9.34156 -8.97934 -8.55457 -8.36691 -6.24018 -4.31479 0.46153 0.89072 1.05784 1.91373 2.07007 2.47667 2.78716 3.20559 3.27743 3.32576 3.39196 3.51313 3.83186 3.89614 4.28363 4.50637 4.65087 4.84520 4.95987 5.00911 5.03797 5.09458 5.13409 5.22834 5.32225 5.51632 5.72478 5.89885 5.99364 6.05953 6.15429 6.36279 6.56033 6.81714 6.83264 7.04634 7.10478 7.52787 7.65147 7.82917 7.85453 8.05712 8.50325 8.79064 9.34094 10.83459 Molecular weight = 318.12amu Principal moments of inertia in cm(-1) A = 0.037684 B = 0.001937 C = 0.001876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.845087 B =14449.200670 C =14921.281425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.216 3.784 3 H 0.049 0.951 4 C -0.522 4.522 5 H 0.070 0.930 6 C 0.062 3.938 7 N -0.888 5.888 8 Si 0.914 3.086 9 H -0.270 1.270 10 H -0.281 1.281 11 H -0.281 1.281 12 O -0.352 6.352 13 C 0.454 3.546 14 O -0.497 6.497 15 C 0.063 3.937 16 O -0.287 6.287 17 C 0.160 3.840 18 C -0.151 4.151 19 C -0.034 4.034 20 C -0.069 4.069 21 C 0.231 3.769 22 N -0.272 5.272 23 N -0.051 5.051 24 N -0.229 5.229 25 H 0.475 0.525 26 N -0.300 5.300 27 C -0.034 4.034 28 C -0.215 4.215 29 H 0.017 0.983 30 H 0.101 0.899 31 H 0.038 0.962 32 H 0.267 0.733 33 H 0.105 0.895 34 H 0.104 0.896 35 H 0.143 0.857 36 H 0.143 0.857 37 H 0.136 0.864 38 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.298 -7.684 24.368 26.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.165 3.835 3 H 0.067 0.933 4 C -0.560 4.560 5 H 0.089 0.911 6 C -0.140 4.140 7 N -0.525 5.525 8 Si 0.740 3.260 9 H -0.195 1.195 10 H -0.207 1.207 11 H -0.207 1.207 12 O -0.269 6.269 13 C 0.294 3.706 14 O -0.385 6.385 15 C -0.013 4.013 16 O -0.199 6.199 17 C 0.113 3.887 18 C -0.170 4.170 19 C -0.054 4.054 20 C -0.072 4.072 21 C -0.048 4.048 22 N -0.145 5.145 23 N -0.046 5.046 24 N -0.075 5.075 25 H 0.329 0.671 26 N -0.151 5.151 27 C -0.055 4.055 28 C -0.234 4.234 29 H 0.036 0.964 30 H 0.119 0.881 31 H 0.057 0.943 32 H 0.077 0.923 33 H 0.122 0.878 34 H 0.121 0.879 35 H 0.161 0.839 36 H 0.161 0.839 37 H 0.154 0.846 38 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 7.248 -6.926 24.714 26.670 hybrid contribution 0.299 -1.136 -0.983 1.532 sum 7.547 -8.063 23.730 26.174 Atomic orbital electron populations 1.22181 0.97332 1.00258 1.01618 1.20749 0.91540 0.94070 0.77183 0.93309 1.21043 1.32683 1.13589 0.88701 0.91135 1.24905 0.94901 0.95102 0.99128 1.69909 1.35944 1.22469 1.24214 0.86188 0.78635 0.79456 0.81671 1.19452 1.20684 1.20712 1.86457 1.76030 1.43469 1.20913 1.22527 0.76142 0.86137 0.85766 1.90659 1.47077 1.16534 1.84276 1.22072 1.03669 0.90275 0.85245 1.86145 1.79928 1.35855 1.17963 1.19283 0.91724 0.92712 0.84972 1.20411 1.05306 1.00292 0.90961 1.20959 0.93828 0.94130 0.96453 1.17093 1.08217 0.94267 0.87662 1.23665 1.00069 0.85128 0.95964 1.76087 1.15842 1.25146 0.97423 1.78900 1.14338 0.89326 1.22049 1.47711 1.42178 1.10573 1.07068 0.67111 1.74937 1.19280 1.23411 0.97499 1.20915 0.94226 0.99443 0.90875 1.21275 1.07713 0.95063 0.99334 0.96365 0.88072 0.94290 0.92343 0.87755 0.87851 0.83904 0.83922 0.84608 0.84172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.87 9.33 37.16 0.35 -3.53 16 2 C 0.22 5.68 2.56 -27.88 -0.07 5.61 16 3 H 0.05 1.42 7.16 -51.93 -0.37 1.05 16 4 C -0.52 -14.29 8.90 -34.44 -0.31 -14.60 16 5 H 0.07 1.89 7.81 -52.48 -0.41 1.48 16 6 C 0.06 1.67 5.30 -17.82 -0.09 1.58 16 7 N -0.89 -24.82 11.32 55.43 0.63 -24.20 16 8 Si 0.91 20.65 29.54 -169.99 -5.02 15.63 16 9 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 10 H -0.28 -6.26 7.11 56.52 0.40 -5.85 16 11 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 12 O -0.35 -7.96 9.86 -39.26 -0.39 -8.34 16 13 C 0.45 9.10 8.01 36.01 0.29 9.38 16 14 O -0.50 -11.78 15.72 -25.48 -0.40 -12.18 16 15 C 0.06 0.87 5.33 36.01 0.19 1.06 16 16 O -0.29 -4.19 9.66 -39.29 -0.38 -4.57 16 17 C 0.16 1.88 6.69 -39.14 -0.26 1.62 16 18 C -0.15 -1.60 9.97 -39.48 -0.39 -1.99 16 19 C -0.03 -0.32 9.70 -39.29 -0.38 -0.70 16 20 C -0.07 -0.68 5.88 -104.88 -0.62 -1.30 16 21 C 0.23 2.35 7.93 -156.30 -1.24 1.11 16 22 N -0.27 -2.91 12.23 32.15 0.39 -2.52 16 23 N -0.05 -0.45 13.47 60.35 0.81 0.36 16 24 N -0.23 -1.41 7.90 60.35 0.48 -0.93 16 25 H 0.47 0.59 8.96 -340.37 -3.05 -2.46 16 26 N -0.30 -2.58 12.08 32.17 0.39 -2.19 16 27 C -0.03 -0.31 9.69 -39.29 -0.38 -0.69 16 28 C -0.22 -2.08 9.02 -39.48 -0.36 -2.44 16 29 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.10 2.69 6.07 -51.92 -0.32 2.37 16 31 H 0.04 0.91 8.14 -51.93 -0.42 0.48 16 32 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 33 H 0.10 1.15 7.65 -51.93 -0.40 0.75 16 34 H 0.10 1.12 7.66 -51.93 -0.40 0.72 16 35 H 0.14 1.39 8.06 -52.49 -0.42 0.96 16 36 H 0.14 1.18 7.88 -52.49 -0.41 0.77 16 37 H 0.14 1.03 7.88 -52.49 -0.41 0.62 16 38 H 0.14 1.10 6.28 -52.49 -0.33 0.77 16 LS Contribution 341.40 15.07 5.14 5.14 Total: -1.00 -33.76 341.40 -8.12 -41.88 By element: Atomic # 1 Polarization: 3.30 SS G_CDS: -6.50 Total: -3.20 kcal Atomic # 6 Polarization: -1.61 SS G_CDS: -3.28 Total: -4.88 kcal Atomic # 7 Polarization: -32.18 SS G_CDS: 2.70 Total: -29.48 kcal Atomic # 8 Polarization: -23.93 SS G_CDS: -1.17 Total: -25.10 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -33.76 -8.12 -41.88 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000735963589.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.151 kcal (2) G-P(sol) polarization free energy of solvation -33.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.880 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds