Wall clock time and date at job start Tue Mar 31 2020 12:41:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08994 * 109.47029 * 2 1 4 4 C 1.50699 * 109.47165 * 239.99918 * 2 1 3 5 5 H 1.08004 * 120.00135 * 239.99800 * 4 2 1 6 6 C 1.37879 * 120.00178 * 60.00108 * 4 2 1 7 7 N 1.31521 * 119.99739 * 0.02562 * 6 4 2 8 8 Si 1.86795 * 120.00248 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46928 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.46860 * 119.99958 * 8 6 4 11 11 H 1.48495 * 109.47371 * 240.00422 * 8 6 4 12 12 O 1.45200 * 109.46743 * 120.00160 * 2 1 3 13 13 C 1.34231 * 116.99825 * 269.99673 * 12 2 1 14 14 O 1.20827 * 119.99791 * 0.02562 * 13 12 2 15 15 C 1.50701 * 120.00051 * 180.02562 * 13 12 2 16 16 O 1.42897 * 109.46987 * 180.02562 * 15 13 12 17 17 C 1.35871 * 116.99997 * 180.02562 * 16 15 13 18 18 C 1.38830 * 119.93748 * 180.02562 * 17 16 15 19 19 C 1.37922 * 120.05800 * 179.97438 * 18 17 16 20 20 C 1.39342 * 119.93625 * 0.02562 * 19 18 17 21 21 C 1.48438 * 120.05864 * 179.97438 * 20 19 18 22 22 N 1.34059 * 126.67514 * 0.02562 * 21 20 19 23 23 N 1.28984 * 107.26645 * 179.97438 * 22 21 20 24 24 N 1.28723 * 108.94564 * 359.97438 * 23 22 21 25 25 H 0.97004 * 125.33488 * 179.97438 * 24 23 22 26 26 N 1.28872 * 109.32698 * 359.97438 * 24 23 22 27 27 C 1.39334 * 119.88215 * 0.24816 * 20 19 18 28 28 C 1.37923 * 119.93655 * 359.51453 * 27 20 19 29 29 H 1.08990 * 109.47087 * 300.00161 * 1 2 3 30 30 H 1.09010 * 109.46893 * 60.00377 * 1 2 3 31 31 H 1.09001 * 109.46910 * 179.97438 * 1 2 3 32 32 H 0.96999 * 119.99408 * 180.02562 * 7 6 4 33 33 H 1.09003 * 109.46482 * 60.00735 * 15 13 12 34 34 H 1.08994 * 109.47274 * 300.00270 * 15 13 12 35 35 H 1.07997 * 119.97109 * 359.97438 * 18 17 16 36 36 H 1.07999 * 120.02831 * 180.02562 * 19 18 17 37 37 H 1.07999 * 120.03549 * 179.72676 * 27 20 19 38 38 H 1.07997 * 119.96873 * 180.23241 * 28 27 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1314 6 6 1.6993 -0.2394 -2.4828 7 7 0.9436 0.8302 -2.6034 8 14 2.3226 -1.1195 -4.0079 9 1 3.1474 -2.2863 -3.6037 10 1 1.1678 -1.5866 -4.8165 11 1 3.1474 -0.1859 -4.8160 12 8 2.0139 -0.6845 1.1856 13 6 2.2171 0.0640 2.2811 14 8 1.9974 1.2517 2.2505 15 6 2.7192 -0.5771 3.5492 16 8 2.8536 0.4186 4.5654 17 6 3.2997 0.0041 5.7800 18 6 3.4524 0.9204 6.8116 19 6 3.9045 0.5023 8.0457 20 6 4.2086 -0.8411 8.2563 21 6 4.6960 -1.2940 9.5832 22 7 4.8916 -0.5306 10.6677 23 7 5.3173 -1.3036 11.6084 24 7 5.3936 -2.5070 11.1579 25 1 5.6872 -3.2789 11.6668 26 7 5.0187 -2.5256 9.9251 27 6 4.0599 -1.7576 7.2174 28 6 3.6027 -1.3348 5.9867 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 0.7090 1.1614 -3.4845 33 1 3.6884 -1.0399 3.3631 34 1 2.0104 -1.3372 3.8774 35 1 3.2169 1.9616 6.6477 36 1 4.0227 1.2155 8.8481 37 1 4.2990 -2.7987 7.3766 38 1 3.4836 -2.0454 5.1822 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000735963589.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:41:05 Heat of formation + Delta-G solvation = 6.633587 kcal Electronic energy + Delta-G solvation = -24517.921618 eV Core-core repulsion = 20556.490203 eV Total energy + Delta-G solvation = -3961.431415 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.116 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -45.42068 -41.69109 -40.87978 -38.75441 -37.51275 -35.35458 -35.31496 -34.38277 -32.28262 -31.90985 -31.06125 -29.49542 -27.45414 -25.77885 -25.23645 -24.19675 -23.24398 -22.47132 -21.47912 -20.16568 -19.51390 -18.92849 -18.28415 -18.10540 -17.68485 -17.56714 -17.39944 -16.69165 -16.20180 -15.98657 -15.56145 -14.95530 -14.81503 -14.40976 -14.38092 -14.17940 -13.83983 -13.70068 -13.61628 -13.22124 -13.02348 -12.95031 -12.81772 -12.59882 -12.39536 -12.32186 -12.25996 -12.13621 -11.87394 -11.63426 -11.50652 -11.36653 -10.99936 -10.60710 -10.07157 -9.17986 -8.28782 -6.45743 -0.26809 0.20480 0.32600 1.20078 1.23908 1.31349 1.44595 1.45463 1.46648 1.59614 2.34996 2.61582 2.72917 2.75670 3.02538 3.19443 3.62794 3.84751 3.95596 4.02570 4.05563 4.20156 4.24988 4.44050 4.49098 4.52618 4.61008 4.78197 4.81967 5.02465 5.11768 5.15120 5.26009 5.40872 5.48652 5.59840 5.61819 5.64753 5.89910 6.03901 6.22346 6.59668 6.88265 7.15194 7.25686 8.79213 Molecular weight = 318.12amu Principal moments of inertia in cm(-1) A = 0.037684 B = 0.001937 C = 0.001876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.845087 B =14449.200670 C =14921.281425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.217 3.783 3 H 0.008 0.992 4 C -0.546 4.546 5 H 0.073 0.927 6 C 0.014 3.986 7 N -0.918 5.918 8 Si 0.985 3.015 9 H -0.260 1.260 10 H -0.273 1.273 11 H -0.278 1.278 12 O -0.353 6.353 13 C 0.447 3.553 14 O -0.542 6.542 15 C 0.076 3.924 16 O -0.316 6.316 17 C 0.139 3.861 18 C -0.159 4.159 19 C -0.033 4.033 20 C -0.072 4.072 21 C 0.218 3.782 22 N -0.297 5.297 23 N -0.058 5.058 24 N -0.201 5.201 25 H 0.494 0.506 26 N -0.297 5.297 27 C -0.032 4.032 28 C -0.208 4.208 29 H 0.024 0.976 30 H 0.081 0.919 31 H 0.050 0.950 32 H 0.271 0.729 33 H 0.139 0.861 34 H 0.141 0.859 35 H 0.142 0.858 36 H 0.151 0.849 37 H 0.155 0.845 38 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.264 -10.298 25.198 28.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.164 3.836 3 H 0.026 0.974 4 C -0.583 4.583 5 H 0.091 0.909 6 C -0.186 4.186 7 N -0.556 5.556 8 Si 0.808 3.192 9 H -0.184 1.184 10 H -0.198 1.198 11 H -0.204 1.204 12 O -0.269 6.269 13 C 0.290 3.710 14 O -0.432 6.432 15 C 0.001 3.999 16 O -0.230 6.230 17 C 0.093 3.907 18 C -0.177 4.177 19 C -0.053 4.053 20 C -0.075 4.075 21 C -0.062 4.062 22 N -0.169 5.169 23 N -0.053 5.053 24 N -0.052 5.052 25 H 0.353 0.647 26 N -0.150 5.150 27 C -0.052 4.052 28 C -0.226 4.226 29 H 0.043 0.957 30 H 0.099 0.901 31 H 0.069 0.931 32 H 0.080 0.920 33 H 0.156 0.844 34 H 0.159 0.841 35 H 0.160 0.840 36 H 0.169 0.831 37 H 0.173 0.827 38 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 8.228 -9.562 25.599 28.538 hybrid contribution 0.050 -0.334 -1.049 1.102 sum 8.277 -9.896 24.549 27.733 Atomic orbital electron populations 1.22005 0.96571 1.00710 1.00899 1.20432 0.92168 0.92192 0.78791 0.97419 1.21331 1.33396 1.13974 0.89620 0.90905 1.25868 0.94756 0.95687 1.02277 1.70034 1.36644 1.23693 1.25206 0.85096 0.78292 0.78419 0.77361 1.18397 1.19800 1.20378 1.86432 1.76269 1.43258 1.20978 1.23817 0.74684 0.85782 0.86680 1.90640 1.48999 1.18652 1.84937 1.22161 1.05952 0.89670 0.82125 1.86084 1.81004 1.36829 1.19060 1.19453 0.93271 0.93959 0.84039 1.20517 1.05531 1.00445 0.91249 1.21027 0.93578 0.94509 0.96227 1.17272 1.07777 0.94493 0.88005 1.23730 1.00830 0.85566 0.96056 1.76071 1.16862 1.26084 0.97922 1.78850 1.14660 0.90006 1.21829 1.47782 1.40234 1.10728 1.06471 0.64703 1.74894 1.19086 1.22762 0.98248 1.21114 0.93557 1.00183 0.90314 1.21483 1.06617 0.94375 1.00131 0.95743 0.90089 0.93071 0.92000 0.84392 0.84145 0.83970 0.83122 0.82732 0.81901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.28 9.33 71.98 0.67 -6.61 16 2 C 0.22 11.67 2.56 29.85 0.08 11.75 16 3 H 0.01 0.49 7.16 -2.39 -0.02 0.47 16 4 C -0.55 -30.10 8.90 25.60 0.23 -29.87 16 5 H 0.07 3.88 7.81 -2.91 -0.02 3.86 16 6 C 0.01 0.74 5.30 84.65 0.45 1.19 16 7 N -0.92 -52.14 11.32 21.45 0.24 -51.89 16 8 Si 0.99 41.91 29.54 68.60 2.03 43.94 16 9 H -0.26 -10.56 7.11 99.48 0.71 -9.86 16 10 H -0.27 -11.18 7.11 99.48 0.71 -10.48 16 11 H -0.28 -11.63 7.11 99.48 0.71 -10.92 16 12 O -0.35 -15.98 9.86 -51.43 -0.51 -16.49 16 13 C 0.45 17.94 8.01 71.24 0.57 18.51 16 14 O -0.54 -26.53 15.72 28.39 0.45 -26.09 16 15 C 0.08 1.94 5.33 71.24 0.38 2.32 16 16 O -0.32 -8.99 9.66 -73.03 -0.71 -9.69 16 17 C 0.14 3.08 6.69 22.55 0.15 3.23 16 18 C -0.16 -3.29 9.97 22.34 0.22 -3.07 16 19 C -0.03 -0.61 9.70 22.46 0.22 -0.40 16 20 C -0.07 -1.31 5.88 -20.03 -0.12 -1.43 16 21 C 0.22 4.07 7.93 137.37 1.09 5.16 16 22 N -0.30 -6.02 12.23 -52.19 -0.64 -6.66 16 23 N -0.06 -0.94 13.47 37.02 0.50 -0.45 16 24 N -0.20 -2.02 7.90 37.02 0.29 -1.73 16 25 H 0.49 -0.04 8.96 -347.54 -3.12 -3.16 16 26 N -0.30 -4.43 12.08 -52.14 -0.63 -5.06 16 27 C -0.03 -0.50 9.69 22.46 0.22 -0.28 16 28 C -0.21 -3.46 9.02 22.34 0.20 -3.26 16 29 H 0.02 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.08 4.42 6.07 -2.38 -0.01 4.41 16 31 H 0.05 2.39 8.14 -2.39 -0.02 2.37 16 32 H 0.27 14.34 8.31 -92.71 -0.77 13.57 16 33 H 0.14 2.60 7.65 -2.39 -0.02 2.58 16 34 H 0.14 2.55 7.66 -2.39 -0.02 2.53 16 35 H 0.14 2.84 8.06 -2.91 -0.02 2.82 16 36 H 0.15 2.44 7.88 -2.91 -0.02 2.42 16 37 H 0.16 1.82 7.88 -2.91 -0.02 1.80 16 38 H 0.16 1.88 6.28 -2.91 -0.02 1.87 16 Total: -1.00 -74.88 341.40 3.40 -71.48 By element: Atomic # 1 Polarization: 7.38 SS G_CDS: -1.98 Total: 5.40 kcal Atomic # 6 Polarization: -7.11 SS G_CDS: 4.36 Total: -2.76 kcal Atomic # 7 Polarization: -65.56 SS G_CDS: -0.23 Total: -65.79 kcal Atomic # 8 Polarization: -51.50 SS G_CDS: -0.77 Total: -52.27 kcal Atomic # 14 Polarization: 41.91 SS G_CDS: 2.03 Total: 43.94 kcal Total: -74.88 3.40 -71.48 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000735963589.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.117 kcal (2) G-P(sol) polarization free energy of solvation -74.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.483 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds