Wall clock time and date at job start Tue Mar 31 2020 12:21:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.29947 * 125.30030 * 2 1 4 4 O 1.41876 * 107.40993 * 179.97438 * 3 2 1 5 5 N 1.41878 * 106.39000 * 359.78190 * 4 3 2 6 6 C 1.29956 * 107.41171 * 0.36581 * 5 4 3 7 7 C 1.50700 * 125.30590 * 179.89763 * 6 5 4 8 8 N 1.46504 * 109.46685 * 269.69763 * 7 6 5 9 9 C 1.34782 * 119.99600 * 179.72531 * 8 7 6 10 10 O 1.21584 * 120.00301 * 0.26875 * 9 8 7 11 11 N 1.34776 * 119.99699 * 180.27210 * 9 8 7 12 12 C 1.39945 * 119.99982 * 175.49477 * 11 9 8 13 13 C 1.38954 * 120.03492 * 214.85174 * 12 11 9 14 14 C 1.38160 * 120.06795 * 179.74384 * 13 12 11 15 15 C 1.38166 * 120.13591 * 0.54841 * 14 13 12 16 16 C 1.38907 * 120.06806 * 359.70451 * 15 14 13 17 17 O 1.35760 * 120.03100 * 179.97438 * 16 15 14 18 18 C 1.34825 * 117.00034 * 5.36249 * 17 16 15 19 19 H 1.08002 * 120.00346 * 354.96970 * 18 17 16 20 20 C 1.38651 * 120.00184 * 174.96685 * 18 17 16 21 21 N 1.31557 * 119.99727 * 0.02562 * 20 18 17 22 22 Si 1.86794 * 120.00253 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47468 * 59.99659 * 22 20 18 24 24 H 1.48506 * 109.47292 * 179.97438 * 22 20 18 25 25 H 1.48506 * 109.47082 * 299.99287 * 22 20 18 26 26 C 1.38704 * 120.03348 * 35.12293 * 12 11 9 27 27 H 1.09000 * 109.47021 * 270.00162 * 1 2 3 28 28 H 1.09001 * 109.47408 * 30.00571 * 1 2 3 29 29 H 1.09007 * 109.47312 * 150.00159 * 1 2 3 30 30 H 1.08998 * 109.47358 * 149.69223 * 7 6 5 31 31 H 1.08999 * 109.46905 * 29.68974 * 7 6 5 32 32 H 0.96998 * 119.99872 * 359.97438 * 8 7 6 33 33 H 0.97001 * 119.99885 * 355.48569 * 11 9 8 34 34 H 1.08002 * 119.96880 * 359.97438 * 13 12 11 35 35 H 1.07997 * 119.93209 * 180.27512 * 14 13 12 36 36 H 1.08001 * 119.96421 * 179.72123 * 15 14 13 37 37 H 0.96994 * 120.00037 * 180.02562 * 21 20 18 38 38 H 1.07992 * 120.06934 * 359.96034 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2580 1.0605 0.0000 4 8 3.6081 0.6247 0.0006 5 7 3.5710 -0.7936 0.0061 6 6 2.3212 -1.1499 0.0006 7 6 1.8208 -2.5714 0.0014 8 7 1.6588 -3.0327 -1.3797 9 6 1.2241 -4.2846 -1.6253 10 8 0.9618 -5.0294 -0.7008 11 7 1.0804 -4.7109 -2.8958 12 6 0.7201 -6.0387 -3.1518 13 6 1.2302 -6.6955 -4.2650 14 6 0.8791 -8.0080 -4.5155 15 6 0.0113 -8.6681 -3.6668 16 6 -0.5061 -8.0153 -2.5552 17 8 -1.3591 -8.6644 -1.7221 18 6 -1.5766 -9.9724 -1.9664 19 1 -1.1459 -10.4373 -2.8409 20 6 -2.3529 -10.7207 -1.0948 21 7 -2.8779 -10.1543 -0.0297 22 14 -2.6536 -12.5330 -1.4328 23 1 -1.3550 -13.2528 -1.4647 24 1 -3.5079 -13.1017 -0.3594 25 1 -3.3365 -12.6857 -2.7426 26 6 -0.1510 -6.6987 -2.2977 27 1 -0.3633 0.0000 1.0277 28 1 -0.3634 0.8899 -0.5139 29 1 -0.3634 -0.8900 -0.5138 30 1 0.8607 -2.6183 0.5152 31 1 2.5397 -3.2093 0.5155 32 1 1.8679 -2.4384 -2.1172 33 1 1.2265 -4.0972 -3.6327 34 1 1.9047 -6.1806 -4.9331 35 1 1.2804 -8.5178 -5.3789 36 1 -0.2648 -9.6927 -3.8678 37 1 -3.4207 -10.6778 0.5802 38 1 -0.5517 -6.1892 -1.4339 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000743102938.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:21:16 Heat of formation + Delta-G solvation = 76.072251 kcal Electronic energy + Delta-G solvation = -24958.847427 eV Core-core repulsion = 21000.427098 eV Total energy + Delta-G solvation = -3958.420329 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.116 amu Computer time = 3.18 seconds Orbital eigenvalues (eV) -42.03988 -40.44410 -38.77651 -36.85812 -35.74056 -34.43337 -34.16262 -33.02669 -32.23486 -29.59017 -29.27340 -28.74262 -27.24778 -25.27082 -23.05939 -22.40359 -21.50880 -21.23258 -20.77682 -18.71885 -18.31654 -17.39971 -17.00348 -16.74121 -16.06978 -15.72689 -15.05964 -15.00604 -14.87389 -14.85623 -14.23521 -14.08829 -14.01932 -13.91939 -13.53450 -13.41528 -13.17462 -12.82194 -12.48652 -12.27710 -12.15553 -11.74751 -11.54695 -11.51702 -11.24679 -11.13084 -10.99634 -10.80347 -10.48134 -10.09308 -9.75896 -9.49512 -9.23761 -8.80478 -7.69992 -7.18789 -6.41123 -4.00276 -0.03698 1.28301 2.04636 2.10889 2.34621 2.51051 2.66187 3.14144 3.15086 3.19062 3.21096 3.29600 3.95615 4.04313 4.10243 4.40561 4.59089 4.65149 4.84715 4.88473 5.11351 5.13295 5.15934 5.32635 5.39447 5.61688 5.81888 5.93819 6.08603 6.19963 6.33183 6.39576 6.44828 6.77121 6.99628 7.05657 7.14542 7.35134 7.48924 7.79654 7.87511 8.03714 8.50526 9.03803 9.74912 10.76723 Molecular weight = 318.12amu Principal moments of inertia in cm(-1) A = 0.021959 B = 0.002422 C = 0.002257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.825027 B =11556.409175 C =12402.583245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.086 3.914 3 N -0.276 5.276 4 O 0.030 5.970 5 N -0.249 5.249 6 C 0.059 3.941 7 C 0.207 3.793 8 N -0.746 5.746 9 C 0.704 3.296 10 O -0.552 6.552 11 N -0.677 5.677 12 C 0.190 3.810 13 C -0.236 4.236 14 C -0.058 4.058 15 C -0.246 4.246 16 C 0.166 3.834 17 O -0.173 6.173 18 C -0.392 4.392 19 H 0.092 0.908 20 C 0.039 3.961 21 N -0.861 5.861 22 Si 0.941 3.059 23 H -0.270 1.270 24 H -0.278 1.278 25 H -0.270 1.270 26 C -0.185 4.185 27 H 0.101 0.899 28 H 0.092 0.908 29 H 0.099 0.901 30 H 0.107 0.893 31 H 0.100 0.900 32 H 0.397 0.603 33 H 0.402 0.598 34 H 0.107 0.893 35 H 0.112 0.888 36 H 0.128 0.872 37 H 0.270 0.730 38 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.548 17.674 -4.044 19.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.096 4.096 3 N -0.022 5.022 4 O -0.112 6.112 5 N 0.009 4.991 6 C -0.125 4.125 7 C 0.081 3.919 8 N -0.405 5.405 9 C 0.404 3.596 10 O -0.426 6.426 11 N -0.324 5.324 12 C 0.096 3.904 13 C -0.257 4.257 14 C -0.077 4.077 15 C -0.265 4.265 16 C 0.112 3.888 17 O -0.076 6.076 18 C -0.468 4.468 19 H 0.110 0.890 20 C -0.165 4.165 21 N -0.496 5.496 22 Si 0.766 3.234 23 H -0.195 1.195 24 H -0.203 1.203 25 H -0.195 1.195 26 C -0.207 4.207 27 H 0.119 0.881 28 H 0.111 0.889 29 H 0.117 0.883 30 H 0.125 0.875 31 H 0.119 0.881 32 H 0.231 0.769 33 H 0.237 0.763 34 H 0.126 0.874 35 H 0.130 0.870 36 H 0.145 0.855 37 H 0.080 0.920 38 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 7.226 17.834 -2.710 19.432 hybrid contribution -0.333 -0.644 -0.930 1.179 sum 6.893 17.190 -3.639 18.874 Atomic orbital electron populations 1.20669 0.83695 1.05748 1.05394 1.24675 1.00613 0.88564 0.95789 1.80003 0.88901 1.19454 1.13819 1.93432 1.20482 1.13186 1.84143 1.80023 1.17520 0.91587 1.10009 1.24621 0.90011 0.98989 0.98829 1.19627 1.03210 0.84667 0.84387 1.44891 1.73854 1.14285 1.07479 1.15796 0.78633 0.81333 0.83814 1.91063 1.54862 1.53852 1.42830 1.42388 1.72482 1.11376 1.06198 1.16926 0.95432 0.82080 0.95955 1.20237 1.08142 0.96123 1.01229 1.20488 0.96091 0.93359 0.97780 1.21187 1.05153 1.01981 0.98217 1.19139 0.88699 0.91534 0.89464 1.83989 1.52441 1.23838 1.47324 1.21293 1.32972 0.82275 1.10280 0.89049 1.25291 0.96167 1.00153 0.94902 1.70040 1.30984 1.36794 1.11745 0.85787 0.78767 0.80571 0.78315 1.19505 1.20315 1.19518 1.20171 1.02741 0.94316 1.03446 0.88064 0.88925 0.88264 0.87469 0.88150 0.76881 0.76300 0.87449 0.87039 0.85470 0.91984 0.84618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.38 10.05 36.01 0.36 -0.02 16 2 C 0.09 0.63 7.19 -82.38 -0.59 0.03 16 3 N -0.28 -2.71 12.98 33.74 0.44 -2.27 16 4 O 0.03 0.34 13.71 12.02 0.16 0.51 16 5 N -0.25 -2.62 12.98 33.74 0.44 -2.18 16 6 C 0.06 0.48 6.55 -82.38 -0.54 -0.06 16 7 C 0.21 1.69 5.84 -5.19 -0.03 1.66 16 8 N -0.75 -6.62 5.55 -66.41 -0.37 -6.99 16 9 C 0.70 9.71 8.41 -86.91 -0.73 8.98 16 10 O -0.55 -10.45 13.78 5.29 0.07 -10.38 16 11 N -0.68 -8.89 5.34 -14.24 -0.08 -8.97 16 12 C 0.19 3.36 6.30 -83.72 -0.53 2.84 16 13 C -0.24 -3.88 9.96 -39.34 -0.39 -4.27 16 14 C -0.06 -1.03 10.03 -39.64 -0.40 -1.43 16 15 C -0.25 -5.29 9.17 -39.36 -0.36 -5.65 16 16 C 0.17 4.09 6.64 -39.14 -0.26 3.83 16 17 O -0.17 -5.02 9.76 0.03 0.00 -5.02 16 18 C -0.39 -11.01 9.49 30.88 0.29 -10.72 16 19 H 0.09 2.35 5.20 -52.49 -0.27 2.08 16 20 C 0.04 1.09 5.49 -17.52 -0.10 0.99 16 21 N -0.86 -25.49 13.67 55.48 0.76 -24.73 16 22 Si 0.94 20.54 29.55 -169.99 -5.02 15.51 16 23 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 24 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 25 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 26 C -0.19 -4.11 8.64 -39.21 -0.34 -4.44 16 27 H 0.10 0.28 8.14 -51.93 -0.42 -0.14 16 28 H 0.09 0.30 8.14 -51.93 -0.42 -0.13 16 29 H 0.10 0.31 7.78 -51.93 -0.40 -0.09 16 30 H 0.11 0.76 7.77 -51.93 -0.40 0.35 16 31 H 0.10 0.94 8.14 -51.93 -0.42 0.51 16 32 H 0.40 2.46 8.48 -40.82 -0.35 2.11 16 33 H 0.40 3.55 8.84 -40.82 -0.36 3.19 16 34 H 0.11 1.41 8.06 -52.49 -0.42 0.98 16 35 H 0.11 1.62 8.06 -52.49 -0.42 1.19 16 36 H 0.13 2.72 5.63 -52.49 -0.30 2.43 16 37 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 38 H 0.14 3.21 6.22 -52.49 -0.33 2.89 16 LS Contribution 341.17 15.07 5.14 5.14 Total: -1.00 -35.65 341.17 -5.72 -41.37 By element: Atomic # 1 Polarization: 9.90 SS G_CDS: -3.66 Total: 6.25 kcal Atomic # 6 Polarization: -4.64 SS G_CDS: -3.61 Total: -8.25 kcal Atomic # 7 Polarization: -46.32 SS G_CDS: 1.19 Total: -45.13 kcal Atomic # 8 Polarization: -15.13 SS G_CDS: 0.24 Total: -14.89 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.51 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -35.65 -5.72 -41.37 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000743102938.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.443 kcal (2) G-P(sol) polarization free energy of solvation -35.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.371 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.18 seconds