Wall clock time and date at job start Tue Mar 31 2020 12:21:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.29947 * 125.30030 * 2 1 4 4 O 1.41876 * 107.40993 * 179.97438 * 3 2 1 5 5 N 1.41878 * 106.39000 * 359.78190 * 4 3 2 6 6 C 1.29956 * 107.41171 * 0.36581 * 5 4 3 7 7 C 1.50700 * 125.30590 * 179.89763 * 6 5 4 8 8 N 1.46504 * 109.46685 * 269.69763 * 7 6 5 9 9 C 1.34782 * 119.99600 * 179.72531 * 8 7 6 10 10 O 1.21584 * 120.00301 * 0.26875 * 9 8 7 11 11 N 1.34776 * 119.99699 * 180.27210 * 9 8 7 12 12 C 1.39945 * 119.99982 * 175.49477 * 11 9 8 13 13 C 1.38954 * 120.03492 * 214.85174 * 12 11 9 14 14 C 1.38160 * 120.06795 * 179.74384 * 13 12 11 15 15 C 1.38166 * 120.13591 * 0.54841 * 14 13 12 16 16 C 1.38907 * 120.06806 * 359.70451 * 15 14 13 17 17 O 1.35760 * 120.03100 * 179.97438 * 16 15 14 18 18 C 1.34825 * 117.00034 * 5.36249 * 17 16 15 19 19 H 1.08002 * 120.00346 * 354.96970 * 18 17 16 20 20 C 1.38651 * 120.00184 * 174.96685 * 18 17 16 21 21 N 1.31557 * 119.99727 * 0.02562 * 20 18 17 22 22 Si 1.86794 * 120.00253 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47468 * 59.99659 * 22 20 18 24 24 H 1.48506 * 109.47292 * 179.97438 * 22 20 18 25 25 H 1.48506 * 109.47082 * 299.99287 * 22 20 18 26 26 C 1.38704 * 120.03348 * 35.12293 * 12 11 9 27 27 H 1.09000 * 109.47021 * 270.00162 * 1 2 3 28 28 H 1.09001 * 109.47408 * 30.00571 * 1 2 3 29 29 H 1.09007 * 109.47312 * 150.00159 * 1 2 3 30 30 H 1.08998 * 109.47358 * 149.69223 * 7 6 5 31 31 H 1.08999 * 109.46905 * 29.68974 * 7 6 5 32 32 H 0.96998 * 119.99872 * 359.97438 * 8 7 6 33 33 H 0.97001 * 119.99885 * 355.48569 * 11 9 8 34 34 H 1.08002 * 119.96880 * 359.97438 * 13 12 11 35 35 H 1.07997 * 119.93209 * 180.27512 * 14 13 12 36 36 H 1.08001 * 119.96421 * 179.72123 * 15 14 13 37 37 H 0.96994 * 120.00037 * 180.02562 * 21 20 18 38 38 H 1.07992 * 120.06934 * 359.96034 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2580 1.0605 0.0000 4 8 3.6081 0.6247 0.0006 5 7 3.5710 -0.7936 0.0061 6 6 2.3212 -1.1499 0.0006 7 6 1.8208 -2.5714 0.0014 8 7 1.6588 -3.0327 -1.3797 9 6 1.2241 -4.2846 -1.6253 10 8 0.9618 -5.0294 -0.7008 11 7 1.0804 -4.7109 -2.8958 12 6 0.7201 -6.0387 -3.1518 13 6 1.2302 -6.6955 -4.2650 14 6 0.8791 -8.0080 -4.5155 15 6 0.0113 -8.6681 -3.6668 16 6 -0.5061 -8.0153 -2.5552 17 8 -1.3591 -8.6644 -1.7221 18 6 -1.5766 -9.9724 -1.9664 19 1 -1.1459 -10.4373 -2.8409 20 6 -2.3529 -10.7207 -1.0948 21 7 -2.8779 -10.1543 -0.0297 22 14 -2.6536 -12.5330 -1.4328 23 1 -1.3550 -13.2528 -1.4647 24 1 -3.5079 -13.1017 -0.3594 25 1 -3.3365 -12.6857 -2.7426 26 6 -0.1510 -6.6987 -2.2977 27 1 -0.3633 0.0000 1.0277 28 1 -0.3634 0.8899 -0.5139 29 1 -0.3634 -0.8900 -0.5138 30 1 0.8607 -2.6183 0.5152 31 1 2.5397 -3.2093 0.5155 32 1 1.8679 -2.4384 -2.1172 33 1 1.2265 -4.0972 -3.6327 34 1 1.9047 -6.1806 -4.9331 35 1 1.2804 -8.5178 -5.3789 36 1 -0.2648 -9.6927 -3.8678 37 1 -3.4207 -10.6778 0.5802 38 1 -0.5517 -6.1892 -1.4339 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000743102938.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:21:12 Heat of formation + Delta-G solvation = 47.843182 kcal Electronic energy + Delta-G solvation = -24960.071531 eV Core-core repulsion = 21000.427098 eV Total energy + Delta-G solvation = -3959.644433 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.116 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.75309 -41.68139 -40.41653 -38.38927 -36.73723 -35.55581 -35.11351 -34.22557 -33.85876 -31.13136 -30.20893 -29.73605 -28.25024 -27.24860 -24.14432 -23.44412 -23.03855 -22.07060 -21.91892 -19.97536 -19.82777 -18.92403 -18.05770 -17.60405 -17.14880 -16.83470 -16.67163 -16.27120 -16.16932 -15.78728 -15.62004 -15.41263 -15.40617 -14.88771 -14.48397 -14.31165 -14.19502 -14.16124 -13.64456 -13.53536 -13.13256 -12.98261 -12.92593 -12.75241 -12.62135 -12.34817 -12.28508 -12.14029 -11.75365 -11.57098 -11.28781 -10.93502 -10.72570 -10.40975 -9.26120 -8.81526 -8.42517 -6.11436 -0.75431 0.49838 0.64208 0.76627 1.29712 1.37214 1.48638 1.53960 1.59843 1.91314 2.01782 2.21613 2.61734 2.88049 3.07827 3.22997 3.42053 3.62904 3.79605 4.07920 4.20560 4.33001 4.42027 4.44334 4.47722 4.60164 4.67646 4.74104 4.80488 5.01985 5.09167 5.13401 5.15876 5.40832 5.50942 5.69569 5.70244 5.80200 5.86853 6.08204 6.26296 6.88044 7.01544 7.41499 7.84800 8.81001 Molecular weight = 318.12amu Principal moments of inertia in cm(-1) A = 0.021959 B = 0.002422 C = 0.002257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.825027 B =11556.409175 C =12402.583245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C 0.104 3.896 3 N -0.297 5.297 4 O -0.001 6.001 5 N -0.271 5.271 6 C 0.077 3.923 7 C 0.207 3.793 8 N -0.720 5.720 9 C 0.705 3.295 10 O -0.606 6.606 11 N -0.662 5.662 12 C 0.201 3.799 13 C -0.205 4.205 14 C -0.050 4.050 15 C -0.257 4.257 16 C 0.125 3.875 17 O -0.234 6.234 18 C -0.413 4.413 19 H 0.105 0.895 20 C -0.026 4.026 21 N -0.923 5.923 22 Si 1.021 2.979 23 H -0.258 1.258 24 H -0.274 1.274 25 H -0.254 1.254 26 C -0.208 4.208 27 H 0.118 0.882 28 H 0.104 0.896 29 H 0.111 0.889 30 H 0.124 0.876 31 H 0.091 0.909 32 H 0.416 0.584 33 H 0.428 0.572 34 H 0.162 0.838 35 H 0.157 0.843 36 H 0.121 0.879 37 H 0.272 0.728 38 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.854 18.414 -7.011 21.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.079 4.079 3 N -0.046 5.046 4 O -0.138 6.138 5 N -0.015 5.015 6 C -0.107 4.107 7 C 0.082 3.918 8 N -0.380 5.380 9 C 0.405 3.595 10 O -0.484 6.484 11 N -0.311 5.311 12 C 0.106 3.894 13 C -0.225 4.225 14 C -0.069 4.069 15 C -0.277 4.277 16 C 0.074 3.926 17 O -0.140 6.140 18 C -0.489 4.489 19 H 0.122 0.878 20 C -0.223 4.223 21 N -0.562 5.562 22 Si 0.839 3.161 23 H -0.182 1.182 24 H -0.198 1.198 25 H -0.178 1.178 26 C -0.230 4.230 27 H 0.136 0.864 28 H 0.122 0.878 29 H 0.129 0.871 30 H 0.142 0.858 31 H 0.109 0.891 32 H 0.253 0.747 33 H 0.268 0.732 34 H 0.180 0.820 35 H 0.175 0.825 36 H 0.139 0.861 37 H 0.081 0.919 38 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 8.629 18.705 -5.759 21.389 hybrid contribution -0.558 -0.578 -0.158 0.819 sum 8.071 18.127 -5.918 20.706 Atomic orbital electron populations 1.20909 0.81010 1.06902 1.06762 1.25160 1.01880 0.87418 0.93428 1.80013 0.88436 1.20347 1.15755 1.93419 1.21769 1.13418 1.85203 1.80000 1.18779 0.91581 1.11101 1.24609 0.89600 0.98956 0.97543 1.19698 1.03881 0.84352 0.83870 1.44563 1.72134 1.12734 1.08544 1.15919 0.78260 0.82059 0.83255 1.91062 1.57032 1.55766 1.44501 1.42147 1.71743 1.10172 1.07066 1.17013 0.93498 0.83730 0.95148 1.20848 1.06143 0.95422 1.00116 1.21001 0.94110 0.93916 0.97857 1.21327 1.06195 1.02037 0.98153 1.19699 0.89708 0.92641 0.90523 1.83953 1.55538 1.24562 1.49973 1.21842 1.33329 0.82697 1.11018 0.87750 1.26646 0.95649 1.05588 0.94434 1.70206 1.33251 1.39071 1.13654 0.84628 0.79127 0.73558 0.78746 1.18220 1.19838 1.17809 1.20213 1.04662 0.94027 1.04095 0.86415 0.87768 0.87051 0.85808 0.89092 0.74746 0.73205 0.82041 0.82541 0.86110 0.91940 0.87358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.48 10.05 71.24 0.72 0.23 16 2 C 0.10 1.31 7.19 43.49 0.31 1.62 16 3 N -0.30 -5.53 12.98 -47.16 -0.61 -6.14 16 4 O 0.00 -0.03 13.71 70.16 0.96 0.93 16 5 N -0.27 -5.47 12.98 -47.16 -0.61 -6.09 16 6 C 0.08 1.12 6.55 43.49 0.29 1.41 16 7 C 0.21 3.04 5.84 85.63 0.50 3.54 16 8 N -0.72 -10.97 5.55 -482.29 -2.68 -13.65 16 9 C 0.70 18.22 8.41 179.05 1.51 19.72 16 10 O -0.61 -23.16 13.78 -3.98 -0.05 -23.22 16 11 N -0.66 -15.25 5.34 -317.23 -1.70 -16.95 16 12 C 0.20 6.66 6.30 38.13 0.24 6.90 16 13 C -0.20 -5.67 9.96 22.42 0.22 -5.45 16 14 C -0.05 -1.58 10.03 22.23 0.22 -1.36 16 15 C -0.26 -11.00 9.17 22.41 0.21 -10.79 16 16 C 0.13 6.43 6.64 22.56 0.15 6.58 16 17 O -0.23 -14.58 9.76 -22.81 -0.22 -14.80 16 18 C -0.41 -24.47 9.49 67.92 0.64 -23.82 16 19 H 0.11 5.58 5.20 -2.91 -0.02 5.57 16 20 C -0.03 -1.51 5.49 84.83 0.47 -1.05 16 21 N -0.92 -58.15 13.67 21.61 0.30 -57.86 16 22 Si 1.02 43.30 29.55 68.60 2.03 45.32 16 23 H -0.26 -10.28 7.11 99.48 0.71 -9.57 16 24 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 25 H -0.25 -9.97 7.11 99.48 0.71 -9.26 16 26 C -0.21 -9.48 8.64 22.51 0.19 -9.29 16 27 H 0.12 0.30 8.14 -2.39 -0.02 0.28 16 28 H 0.10 0.35 8.14 -2.39 -0.02 0.34 16 29 H 0.11 0.33 7.78 -2.38 -0.02 0.32 16 30 H 0.12 1.51 7.77 -2.39 -0.02 1.49 16 31 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.42 3.64 8.48 -92.71 -0.79 2.86 16 33 H 0.43 5.42 8.84 -92.71 -0.82 4.60 16 34 H 0.16 2.90 8.06 -2.91 -0.02 2.87 16 35 H 0.16 3.58 8.06 -2.91 -0.02 3.55 16 36 H 0.12 5.21 5.63 -2.91 -0.02 5.19 16 37 H 0.27 15.67 8.31 -92.71 -0.77 14.90 16 38 H 0.11 5.48 6.22 -2.91 -0.02 5.46 16 Total: -1.00 -87.12 341.17 2.63 -84.50 By element: Atomic # 1 Polarization: 20.14 SS G_CDS: -0.45 Total: 19.69 kcal Atomic # 6 Polarization: -17.41 SS G_CDS: 5.66 Total: -11.74 kcal Atomic # 7 Polarization: -95.38 SS G_CDS: -5.30 Total: -100.68 kcal Atomic # 8 Polarization: -37.77 SS G_CDS: 0.68 Total: -37.09 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.32 kcal Total: -87.12 2.63 -84.50 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000743102938.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.341 kcal (2) G-P(sol) polarization free energy of solvation -87.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.498 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds