Wall clock time and date at job start Tue Mar 31 2020 11:41:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.34221 * 125.73982 * 2 1 4 4 C 1.38123 * 107.40333 * 179.90829 * 3 2 1 5 5 C 1.47296 * 126.42536 * 180.17722 * 4 3 2 6 6 O 1.21524 * 119.99604 * 174.33028 * 5 4 3 7 7 O 1.34753 * 119.99712 * 354.32647 * 5 4 3 8 8 C 1.45207 * 116.99657 * 184.52251 * 7 5 4 9 9 C 1.52994 * 109.46819 * 184.15241 * 8 7 5 10 10 C 1.50704 * 115.55142 * 306.55933 * 9 8 7 11 11 H 1.08000 * 119.99579 * 144.84243 * 10 9 8 12 12 C 1.37874 * 119.99892 * 324.84028 * 10 9 8 13 13 N 1.31510 * 120.00452 * 349.92081 * 12 10 9 14 14 Si 1.86797 * 119.99746 * 169.92487 * 12 10 9 15 15 H 1.48501 * 109.47390 * 0.02562 * 14 12 10 16 16 H 1.48503 * 109.47271 * 119.99935 * 14 12 10 17 17 H 1.48497 * 109.47326 * 239.99985 * 14 12 10 18 18 C 1.52998 * 117.49705 * 160.89281 * 9 8 7 19 19 C 1.52996 * 117.49926 * 92.23533 * 9 8 7 20 20 C 1.41341 * 107.15091 * 0.35440 * 4 3 2 21 21 C 1.50695 * 125.99992 * 179.75880 * 20 4 3 22 22 F 1.39891 * 109.47576 * 185.00557 * 21 20 4 23 23 F 1.39908 * 109.47189 * 305.00481 * 21 20 4 24 24 F 1.39905 * 109.46855 * 64.99951 * 21 20 4 25 25 N 1.30436 * 108.00739 * 359.78355 * 20 4 3 26 26 H 1.09001 * 109.46634 * 269.71421 * 1 2 3 27 27 H 1.09003 * 109.47075 * 29.71458 * 1 2 3 28 28 H 1.08999 * 109.46974 * 149.71397 * 1 2 3 29 29 H 1.08003 * 126.29975 * 0.04340 * 3 2 1 30 30 H 1.08999 * 109.47326 * 304.15714 * 8 7 5 31 31 H 1.09008 * 109.46647 * 64.15306 * 8 7 5 32 32 H 0.96998 * 120.00045 * 185.02357 * 13 12 10 33 33 H 1.09008 * 117.50011 * 359.97438 * 18 9 8 34 34 H 1.08997 * 117.50189 * 145.02087 * 18 9 8 35 35 H 1.09004 * 117.50163 * 214.97697 * 19 9 8 36 36 H 1.09005 * 117.50180 * 359.96710 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2491 1.0894 0.0000 4 6 3.5602 0.6549 0.0021 5 6 4.7632 1.5048 0.0065 6 8 5.8635 0.9997 0.1120 7 8 4.6437 2.8422 -0.1064 8 6 5.8737 3.6087 -0.1963 9 6 5.5436 5.1025 -0.2138 10 6 4.5509 5.5365 -1.2613 11 1 3.8499 6.3293 -1.0454 12 6 4.5376 4.9216 -2.4953 13 7 5.5085 4.1008 -2.8315 14 14 3.1404 5.2545 -3.6896 15 1 2.1815 6.2082 -3.0763 16 1 3.6872 5.8388 -4.9406 17 1 2.4421 3.9817 -4.0018 18 6 6.6667 6.0784 0.1425 19 6 5.5209 5.8367 1.1282 20 6 3.5309 -0.7582 -0.0050 21 6 4.7315 -1.6689 -0.0107 22 9 4.3089 -2.9970 -0.1320 23 9 5.5593 -1.3425 -1.0903 24 9 5.4411 -1.5126 1.1849 25 7 2.2824 -1.1357 -0.0062 26 1 -0.3633 -0.0051 1.0277 27 1 -0.3633 0.8926 -0.5094 28 1 -0.3633 -0.8874 -0.5183 29 1 1.9160 2.1168 0.0007 30 1 6.5043 3.3859 0.6644 31 1 6.4016 3.3424 -1.1121 32 1 5.5383 3.7251 -3.7253 33 1 7.6408 5.6561 0.3898 34 1 6.6875 7.0345 -0.3804 35 1 4.7883 6.6340 1.2535 36 1 5.7407 5.2555 2.0238 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000744277606.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:41:29 Heat of formation + Delta-G solvation = -121.462376 kcal Electronic energy + Delta-G solvation = -27522.550322 eV Core-core repulsion = 22981.414758 eV Total energy + Delta-G solvation = -4541.135564 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.098 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.91100 -47.47017 -47.34969 -41.68057 -39.15231 -36.70593 -35.00061 -33.96650 -32.19262 -30.96026 -28.55447 -26.77184 -25.64107 -25.16848 -22.81236 -21.30870 -21.13407 -20.23272 -19.19551 -18.28776 -18.02306 -17.89494 -17.02892 -16.59571 -16.07616 -15.99427 -15.25952 -15.04764 -14.59718 -14.33728 -14.23667 -13.85566 -13.79260 -13.60788 -13.52220 -13.48601 -13.26464 -13.13294 -12.96882 -12.27368 -11.99702 -11.95658 -11.53405 -11.38447 -11.05357 -10.84763 -10.52927 -10.36809 -10.02368 -10.01610 -9.50684 -9.46327 -9.10451 -8.97655 -8.78993 -8.15968 -6.07154 -4.12520 1.29880 1.54720 1.75566 2.77938 3.19988 3.29595 3.32480 3.41417 3.60921 3.70996 4.01398 4.31508 4.48837 4.55486 4.64266 4.79944 4.94001 5.07271 5.15021 5.24233 5.44316 5.59153 5.81551 6.04593 6.20962 6.44712 6.48590 6.62084 6.63632 6.80029 6.96017 7.01335 7.23870 7.40522 7.51746 7.87028 8.31010 8.62683 8.83759 9.47452 10.94041 Molecular weight = 318.10amu Principal moments of inertia in cm(-1) A = 0.013345 B = 0.005038 C = 0.004403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2097.707827 B = 5556.252735 C = 6358.256202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.350 5.350 3 C 0.136 3.864 4 C -0.226 4.226 5 C 0.528 3.472 6 O -0.515 6.515 7 O -0.320 6.320 8 C 0.119 3.881 9 C 0.047 3.953 10 C -0.483 4.483 11 H 0.062 0.938 12 C 0.075 3.925 13 N -0.880 5.880 14 Si 0.893 3.107 15 H -0.272 1.272 16 H -0.284 1.284 17 H -0.283 1.283 18 C -0.192 4.192 19 C -0.210 4.210 20 C 0.035 3.965 21 C 0.560 3.440 22 F -0.173 7.173 23 F -0.153 7.153 24 F -0.158 7.158 25 N -0.246 5.246 26 H 0.086 0.914 27 H 0.100 0.900 28 H 0.097 0.903 29 H 0.209 0.791 30 H 0.029 0.971 31 H 0.114 0.886 32 H 0.263 0.737 33 H 0.067 0.933 34 H 0.083 0.917 35 H 0.078 0.922 36 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.386 -8.601 5.436 13.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.130 5.130 3 C -0.013 4.013 4 C -0.239 4.239 5 C 0.372 3.628 6 O -0.406 6.406 7 O -0.234 6.234 8 C 0.046 3.954 9 C 0.047 3.953 10 C -0.520 4.520 11 H 0.080 0.920 12 C -0.128 4.128 13 N -0.517 5.517 14 Si 0.721 3.279 15 H -0.197 1.197 16 H -0.210 1.210 17 H -0.209 1.209 18 C -0.230 4.230 19 C -0.247 4.247 20 C -0.133 4.133 21 C 0.503 3.497 22 F -0.155 7.155 23 F -0.134 7.134 24 F -0.139 7.139 25 N -0.069 5.069 26 H 0.105 0.895 27 H 0.119 0.881 28 H 0.115 0.885 29 H 0.225 0.775 30 H 0.048 0.952 31 H 0.131 0.869 32 H 0.073 0.927 33 H 0.086 0.914 34 H 0.102 0.898 35 H 0.096 0.904 36 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -9.963 -9.878 5.331 15.008 hybrid contribution 0.056 0.816 -0.683 1.065 sum -9.907 -9.062 4.648 14.208 Atomic orbital electron populations 1.22172 0.72274 1.05692 1.04497 1.48403 1.07566 1.03302 1.53724 1.23517 0.89339 0.94392 0.94092 1.19333 0.93014 0.90697 1.20878 1.19717 0.86866 0.82669 0.73593 1.90820 1.27407 1.75387 1.46975 1.86502 1.39336 1.16097 1.81469 1.22841 0.81723 0.89299 1.01546 1.18906 0.96583 0.87481 0.92368 1.20436 1.16096 1.18761 0.96703 0.91955 1.24929 0.95616 0.94215 0.98030 1.69786 1.30896 1.31407 1.19568 0.86522 0.82603 0.77970 0.80827 1.19661 1.21034 1.20913 1.22966 0.92875 1.02633 1.04558 1.22969 1.02446 1.04967 0.94322 1.22119 0.93040 0.93132 1.05014 1.16678 0.80919 0.76982 0.75087 1.93205 1.90012 1.36487 1.95766 1.93296 1.72932 1.92294 1.54876 1.93256 1.79437 1.95304 1.45929 1.77108 0.99677 1.08106 1.21991 0.89537 0.88116 0.88467 0.77475 0.95246 0.86867 0.92665 0.91408 0.89798 0.90368 0.91267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.58 11.44 59.85 0.68 1.27 16 2 N -0.35 -4.23 3.98 -67.58 -0.27 -4.50 16 3 C 0.14 1.88 11.34 -16.55 -0.19 1.70 16 4 C -0.23 -4.06 6.12 -105.08 -0.64 -4.70 16 5 C 0.53 11.41 7.94 34.41 0.27 11.69 16 6 O -0.52 -12.08 13.90 -19.28 -0.27 -12.35 16 7 O -0.32 -7.36 9.69 -40.63 -0.39 -7.76 16 8 C 0.12 2.88 4.59 37.15 0.17 3.05 16 9 C 0.05 1.14 2.13 -155.66 -0.33 0.81 16 10 C -0.48 -12.50 8.76 -34.44 -0.30 -12.80 16 11 H 0.06 1.60 7.83 -52.49 -0.41 1.19 16 12 C 0.08 1.96 5.18 -17.82 -0.09 1.86 16 13 N -0.88 -23.84 10.74 55.43 0.60 -23.25 16 14 Si 0.89 20.00 29.55 -169.99 -5.02 14.98 16 15 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 16 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 17 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 18 C -0.19 -4.20 9.96 -26.70 -0.27 -4.47 16 19 C -0.21 -4.40 9.92 -26.70 -0.26 -4.66 16 20 C 0.04 0.61 6.55 -82.01 -0.54 0.07 16 21 C 0.56 9.65 2.83 36.00 0.10 9.75 16 22 F -0.17 -2.70 17.14 2.25 0.04 -2.66 16 23 F -0.15 -2.89 16.04 2.25 0.04 -2.85 16 24 F -0.16 -2.79 16.51 2.25 0.04 -2.76 16 25 N -0.25 -3.72 12.27 33.90 0.42 -3.31 16 26 H 0.09 0.39 8.14 -51.93 -0.42 -0.04 16 27 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.21 2.33 8.06 -52.48 -0.42 1.91 16 30 H 0.03 0.68 7.94 -51.93 -0.41 0.27 16 31 H 0.11 3.05 6.04 -51.92 -0.31 2.74 16 32 H 0.26 6.90 8.32 -40.82 -0.34 6.56 16 33 H 0.07 1.39 8.14 -51.92 -0.42 0.97 16 34 H 0.08 1.82 8.14 -51.93 -0.42 1.39 16 35 H 0.08 1.58 8.14 -51.93 -0.42 1.15 16 36 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 LS Contribution 333.10 15.07 5.02 5.02 Total: -1.00 -31.32 333.10 -4.86 -36.18 By element: Atomic # 1 Polarization: 3.35 SS G_CDS: -3.65 Total: -0.31 kcal Atomic # 6 Polarization: 4.95 SS G_CDS: -1.39 Total: 3.56 kcal Atomic # 7 Polarization: -31.80 SS G_CDS: 0.74 Total: -31.05 kcal Atomic # 8 Polarization: -19.44 SS G_CDS: -0.66 Total: -20.10 kcal Atomic # 9 Polarization: -8.38 SS G_CDS: 0.11 Total: -8.27 kcal Atomic # 14 Polarization: 20.00 SS G_CDS: -5.02 Total: 14.98 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -31.32 -4.86 -36.18 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000744277606.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.287 kcal (2) G-P(sol) polarization free energy of solvation -31.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds