Wall clock time and date at job start Tue Mar 31 2020 11:41:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.34221 * 125.73982 * 2 1 4 4 C 1.38123 * 107.40333 * 179.90829 * 3 2 1 5 5 C 1.47296 * 126.42536 * 180.17722 * 4 3 2 6 6 O 1.21524 * 119.99604 * 174.33028 * 5 4 3 7 7 O 1.34753 * 119.99712 * 354.32647 * 5 4 3 8 8 C 1.45207 * 116.99657 * 184.52251 * 7 5 4 9 9 C 1.52994 * 109.46819 * 184.15241 * 8 7 5 10 10 C 1.50704 * 115.55142 * 306.55933 * 9 8 7 11 11 H 1.08000 * 119.99579 * 144.84243 * 10 9 8 12 12 C 1.37874 * 119.99892 * 324.84028 * 10 9 8 13 13 N 1.31510 * 120.00452 * 349.92081 * 12 10 9 14 14 Si 1.86797 * 119.99746 * 169.92487 * 12 10 9 15 15 H 1.48501 * 109.47390 * 0.02562 * 14 12 10 16 16 H 1.48503 * 109.47271 * 119.99935 * 14 12 10 17 17 H 1.48497 * 109.47326 * 239.99985 * 14 12 10 18 18 C 1.52998 * 117.49705 * 160.89281 * 9 8 7 19 19 C 1.52996 * 117.49926 * 92.23533 * 9 8 7 20 20 C 1.41341 * 107.15091 * 0.35440 * 4 3 2 21 21 C 1.50695 * 125.99992 * 179.75880 * 20 4 3 22 22 F 1.39891 * 109.47576 * 185.00557 * 21 20 4 23 23 F 1.39908 * 109.47189 * 305.00481 * 21 20 4 24 24 F 1.39905 * 109.46855 * 64.99951 * 21 20 4 25 25 N 1.30436 * 108.00739 * 359.78355 * 20 4 3 26 26 H 1.09001 * 109.46634 * 269.71421 * 1 2 3 27 27 H 1.09003 * 109.47075 * 29.71458 * 1 2 3 28 28 H 1.08999 * 109.46974 * 149.71397 * 1 2 3 29 29 H 1.08003 * 126.29975 * 0.04340 * 3 2 1 30 30 H 1.08999 * 109.47326 * 304.15714 * 8 7 5 31 31 H 1.09008 * 109.46647 * 64.15306 * 8 7 5 32 32 H 0.96998 * 120.00045 * 185.02357 * 13 12 10 33 33 H 1.09008 * 117.50011 * 359.97438 * 18 9 8 34 34 H 1.08997 * 117.50189 * 145.02087 * 18 9 8 35 35 H 1.09004 * 117.50163 * 214.97697 * 19 9 8 36 36 H 1.09005 * 117.50180 * 359.96710 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2491 1.0894 0.0000 4 6 3.5602 0.6549 0.0021 5 6 4.7632 1.5048 0.0065 6 8 5.8635 0.9997 0.1120 7 8 4.6437 2.8422 -0.1064 8 6 5.8737 3.6087 -0.1963 9 6 5.5436 5.1025 -0.2138 10 6 4.5509 5.5365 -1.2613 11 1 3.8499 6.3293 -1.0454 12 6 4.5376 4.9216 -2.4953 13 7 5.5085 4.1008 -2.8315 14 14 3.1404 5.2545 -3.6896 15 1 2.1815 6.2082 -3.0763 16 1 3.6872 5.8388 -4.9406 17 1 2.4421 3.9817 -4.0018 18 6 6.6667 6.0784 0.1425 19 6 5.5209 5.8367 1.1282 20 6 3.5309 -0.7582 -0.0050 21 6 4.7315 -1.6689 -0.0107 22 9 4.3089 -2.9970 -0.1320 23 9 5.5593 -1.3425 -1.0903 24 9 5.4411 -1.5126 1.1849 25 7 2.2824 -1.1357 -0.0062 26 1 -0.3633 -0.0051 1.0277 27 1 -0.3633 0.8926 -0.5094 28 1 -0.3633 -0.8874 -0.5183 29 1 1.9160 2.1168 0.0007 30 1 6.5043 3.3859 0.6644 31 1 6.4016 3.3424 -1.1121 32 1 5.5383 3.7251 -3.7253 33 1 7.6408 5.6561 0.3898 34 1 6.6875 7.0345 -0.3804 35 1 4.7883 6.6340 1.2535 36 1 5.7407 5.2555 2.0238 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000744277606.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:41:28 Heat of formation + Delta-G solvation = -139.159362 kcal Electronic energy + Delta-G solvation = -27523.317721 eV Core-core repulsion = 22981.414758 eV Total energy + Delta-G solvation = -4541.902963 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.098 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -51.27196 -48.79994 -48.76182 -42.84293 -40.83693 -38.47420 -36.72762 -34.98734 -34.13243 -32.19726 -29.54343 -28.49107 -27.41124 -26.56876 -24.12092 -22.96529 -22.38773 -21.62847 -21.05719 -19.66254 -19.38359 -19.21789 -18.47380 -18.36592 -17.46391 -17.30523 -16.74440 -16.49815 -16.32458 -15.67560 -15.61040 -15.47842 -15.16605 -14.92124 -14.90333 -14.89490 -14.80671 -13.99634 -13.87764 -13.73827 -13.63951 -13.47734 -13.26248 -12.84466 -12.71376 -12.53100 -12.24828 -12.09035 -11.74473 -11.32324 -11.26484 -11.05382 -10.99547 -10.62504 -10.19059 -10.02711 -8.00601 -6.12413 0.16481 0.19177 0.72496 1.44229 1.48279 1.53335 1.59256 1.86811 2.08188 2.41696 2.46927 2.74522 3.07909 3.19068 3.41982 3.61377 3.71867 4.01006 4.10745 4.27524 4.34932 4.41392 4.42995 4.56045 4.66968 4.70145 4.82460 4.95962 5.03748 5.23176 5.45546 5.52664 5.56126 5.78461 5.86330 5.88051 6.38683 6.83057 6.97401 7.50118 8.98773 Molecular weight = 318.10amu Principal moments of inertia in cm(-1) A = 0.013345 B = 0.005038 C = 0.004403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2097.707827 B = 5556.252735 C = 6358.256202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.330 5.330 3 C 0.161 3.839 4 C -0.267 4.267 5 C 0.524 3.476 6 O -0.546 6.546 7 O -0.325 6.325 8 C 0.129 3.871 9 C 0.010 3.990 10 C -0.493 4.493 11 H 0.061 0.939 12 C 0.031 3.969 13 N -0.908 5.908 14 Si 0.952 3.048 15 H -0.260 1.260 16 H -0.289 1.289 17 H -0.279 1.279 18 C -0.190 4.190 19 C -0.184 4.184 20 C 0.022 3.978 21 C 0.558 3.442 22 F -0.164 7.164 23 F -0.168 7.168 24 F -0.164 7.164 25 N -0.249 5.249 26 H 0.112 0.888 27 H 0.130 0.870 28 H 0.109 0.891 29 H 0.237 0.763 30 H 0.031 0.969 31 H 0.080 0.920 32 H 0.258 0.742 33 H 0.077 0.923 34 H 0.082 0.918 35 H 0.089 0.911 36 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.314 -8.079 5.971 15.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.109 5.109 3 C 0.009 3.991 4 C -0.280 4.280 5 C 0.370 3.630 6 O -0.439 6.439 7 O -0.240 6.240 8 C 0.056 3.944 9 C 0.010 3.990 10 C -0.530 4.530 11 H 0.079 0.921 12 C -0.169 4.169 13 N -0.547 5.547 14 Si 0.778 3.222 15 H -0.183 1.183 16 H -0.216 1.216 17 H -0.205 1.205 18 C -0.228 4.228 19 C -0.221 4.221 20 C -0.145 4.145 21 C 0.501 3.499 22 F -0.145 7.145 23 F -0.149 7.149 24 F -0.146 7.146 25 N -0.072 5.072 26 H 0.130 0.870 27 H 0.149 0.851 28 H 0.127 0.873 29 H 0.254 0.746 30 H 0.049 0.951 31 H 0.098 0.902 32 H 0.068 0.932 33 H 0.095 0.905 34 H 0.101 0.899 35 H 0.107 0.893 36 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -12.934 -9.366 5.883 17.018 hybrid contribution 0.870 0.632 -0.804 1.343 sum -12.064 -8.734 5.078 15.736 Atomic orbital electron populations 1.22805 0.68454 1.07810 1.06860 1.48926 1.09264 1.01884 1.50851 1.23842 0.87977 0.95787 0.91508 1.19233 0.93297 0.90649 1.24817 1.20317 0.87927 0.82268 0.72502 1.90786 1.28963 1.75572 1.48540 1.86488 1.38611 1.17007 1.81861 1.22530 0.82192 0.89854 0.99868 1.19041 0.98018 0.87625 0.94342 1.20659 1.16360 1.18685 0.97300 0.92100 1.25614 0.97493 0.94140 0.99634 1.69963 1.32577 1.32560 1.19558 0.85601 0.80100 0.78030 0.78500 1.18344 1.21567 1.20498 1.22978 0.93303 1.01834 1.04699 1.22980 1.01554 1.04121 0.93447 1.21993 0.93485 0.92724 1.06325 1.16766 0.81058 0.77565 0.74471 1.93213 1.89835 1.35807 1.95685 1.93258 1.73558 1.92501 1.55607 1.93233 1.79731 1.95403 1.46213 1.77066 0.99046 1.09526 1.21604 0.86981 0.85146 0.87291 0.74644 0.95079 0.90188 0.93220 0.90477 0.89897 0.89290 0.89643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.62 11.44 127.77 1.46 2.08 16 2 N -0.33 -6.91 3.98 -367.72 -1.46 -8.38 16 3 C 0.16 4.04 11.34 84.30 0.96 5.00 16 4 C -0.27 -9.44 6.12 -20.16 -0.12 -9.56 16 5 C 0.52 23.10 7.94 70.20 0.56 23.66 16 6 O -0.55 -26.64 13.90 19.76 0.27 -26.36 16 7 O -0.33 -15.11 9.69 -56.63 -0.55 -15.66 16 8 C 0.13 6.37 4.59 71.98 0.33 6.70 16 9 C 0.01 0.49 2.13 -52.93 -0.11 0.37 16 10 C -0.49 -25.24 8.76 25.60 0.22 -25.02 16 11 H 0.06 3.06 7.83 -2.91 -0.02 3.03 16 12 C 0.03 1.62 5.18 84.65 0.44 2.05 16 13 N -0.91 -50.20 10.74 21.45 0.23 -49.97 16 14 Si 0.95 40.47 29.55 68.60 2.03 42.50 16 15 H -0.26 -10.40 7.11 99.48 0.71 -9.69 16 16 H -0.29 -12.45 7.11 99.48 0.71 -11.74 16 17 H -0.28 -11.59 7.11 99.48 0.71 -10.89 16 18 C -0.19 -8.15 9.96 30.62 0.30 -7.84 16 19 C -0.18 -7.37 9.92 30.62 0.30 -7.07 16 20 C 0.02 0.76 6.55 43.53 0.29 1.04 16 21 C 0.56 19.60 2.83 71.23 0.20 19.80 16 22 F -0.16 -5.11 17.14 44.97 0.77 -4.34 16 23 F -0.17 -6.60 16.04 44.97 0.72 -5.88 16 24 F -0.16 -5.99 16.51 44.97 0.74 -5.25 16 25 N -0.25 -7.08 12.27 -46.65 -0.57 -7.65 16 26 H 0.11 0.44 8.14 -2.39 -0.02 0.42 16 27 H 0.13 0.37 8.14 -2.39 -0.02 0.35 16 28 H 0.11 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.24 4.44 8.06 -2.91 -0.02 4.42 16 30 H 0.03 1.47 7.94 -2.39 -0.02 1.45 16 31 H 0.08 4.49 6.04 -2.38 -0.01 4.48 16 32 H 0.26 13.88 8.32 -92.71 -0.77 13.11 16 33 H 0.08 3.11 8.14 -2.38 -0.02 3.09 16 34 H 0.08 3.52 8.14 -2.39 -0.02 3.50 16 35 H 0.09 3.36 8.14 -2.38 -0.02 3.34 16 36 H 0.09 3.13 8.14 -2.38 -0.02 3.11 16 Total: -1.00 -69.26 333.10 8.14 -61.11 By element: Atomic # 1 Polarization: 7.54 SS G_CDS: 1.13 Total: 8.67 kcal Atomic # 6 Polarization: 6.38 SS G_CDS: 4.83 Total: 11.20 kcal Atomic # 7 Polarization: -64.20 SS G_CDS: -1.81 Total: -66.00 kcal Atomic # 8 Polarization: -41.75 SS G_CDS: -0.27 Total: -42.02 kcal Atomic # 9 Polarization: -17.70 SS G_CDS: 2.23 Total: -15.46 kcal Atomic # 14 Polarization: 40.47 SS G_CDS: 2.03 Total: 42.50 kcal Total: -69.26 8.14 -61.11 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000744277606.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.048 kcal (2) G-P(sol) polarization free energy of solvation -69.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds