Wall clock time and date at job start Tue Mar 31 2020 11:59:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86794 * 120.00433 * 2 1 4 4 H 1.48498 * 109.47123 * 264.65600 * 3 2 1 5 5 H 1.48500 * 109.46998 * 24.65114 * 3 2 1 6 6 H 1.48499 * 109.47525 * 144.65205 * 3 2 1 7 7 C 1.37880 * 119.99668 * 179.72154 * 2 1 3 8 8 H 1.07996 * 120.00352 * 220.29886 * 7 2 1 9 9 C 1.50702 * 120.00001 * 40.30252 * 7 2 1 10 10 C 1.52997 * 115.54938 * 220.47654 * 9 7 2 11 11 O 1.45201 * 109.47159 * 66.13220 * 10 9 7 12 12 C 1.34231 * 116.99873 * 182.76663 * 11 10 9 13 13 O 1.20824 * 120.00045 * 5.52403 * 12 11 10 14 14 C 1.50707 * 119.99769 * 185.52948 * 12 11 10 15 15 H 1.08998 * 108.61071 * 349.08627 * 14 12 11 16 16 C 1.51868 * 108.65316 * 231.05444 * 14 12 11 17 17 C 1.53539 * 108.96699 * 178.63652 * 16 14 12 18 18 S 1.81611 * 107.27982 * 72.69636 * 17 16 14 19 19 C 1.76457 * 102.61035 * 313.58263 * 18 17 16 20 20 C 1.39634 * 117.71831 * 192.80569 * 19 18 17 21 21 C 1.37740 * 120.62980 * 180.50018 * 20 19 18 22 22 C 1.38338 * 119.50605 * 0.07154 * 21 20 19 23 23 C 1.37765 * 120.01400 * 359.67148 * 22 21 20 24 24 C 1.38185 * 122.30270 * 12.89525 * 19 18 17 25 25 C 1.53001 * 117.50068 * 74.76661 * 9 7 2 26 26 C 1.52994 * 59.99972 * 252.51145 * 25 9 7 27 27 H 0.96996 * 119.99802 * 176.70699 * 1 2 3 28 28 H 1.08999 * 109.47203 * 186.13461 * 10 9 7 29 29 H 1.08995 * 109.47185 * 306.13046 * 10 9 7 30 30 H 1.09000 * 109.55925 * 298.47749 * 16 14 12 31 31 H 1.09000 * 109.55906 * 58.79035 * 16 14 12 32 32 H 1.08997 * 109.89474 * 192.14573 * 17 16 14 33 33 H 1.09008 * 109.89149 * 313.25806 * 17 16 14 34 34 H 1.07995 * 119.68331 * 0.48109 * 20 19 18 35 35 H 1.08002 * 120.24619 * 180.09510 * 21 20 19 36 36 H 1.08003 * 119.99462 * 179.69949 * 22 21 20 37 37 H 1.07997 * 119.46749 * 180.02562 * 23 22 21 38 38 H 1.09006 * 117.49911 * 0.02562 * 25 9 7 39 39 H 1.09001 * 117.49859 * 145.01852 * 25 9 7 40 40 H 1.09000 * 117.49800 * 252.51085 * 26 25 9 41 41 H 1.09002 * 117.49729 * 107.49096 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.6097 1.9811 -1.3940 5 1 1.3948 2.6826 0.5840 6 1 3.4857 1.4753 0.8100 7 6 2.0045 -1.1941 0.0058 8 1 2.8922 -1.3023 0.6112 9 6 1.5192 -2.3484 -0.8328 10 6 1.6061 -3.7259 -0.1728 11 8 0.6927 -3.7810 0.9546 12 6 0.6889 -4.9096 1.6812 13 8 1.4924 -5.7812 1.4477 14 6 -0.3178 -5.0897 2.7882 15 1 -0.8131 -4.1353 2.9666 16 6 0.4180 -5.4989 4.0521 17 6 -0.5975 -5.6511 5.1936 18 16 -1.5420 -7.1695 4.8765 19 6 -1.9468 -7.0211 3.1654 20 6 -2.9081 -7.8914 2.6476 21 6 -3.2623 -7.8349 1.3177 22 6 -2.6564 -6.9065 0.4901 23 6 -1.7114 -6.0428 0.9990 24 6 -1.3474 -6.0861 2.3432 25 6 1.7531 -2.2720 -2.3429 26 6 0.3433 -2.0904 -1.7770 27 1 -0.4849 -0.8386 -0.0483 28 1 1.3355 -4.4938 -0.8975 29 1 2.6244 -3.8982 0.1759 30 1 0.9263 -6.4489 3.8871 31 1 1.1484 -4.7331 4.3133 32 1 -0.0748 -5.7316 6.1467 33 1 -1.2693 -4.7928 5.2093 34 1 -3.3782 -8.6160 3.2959 35 1 -4.0076 -8.5100 0.9240 36 1 -2.9246 -6.8585 -0.5550 37 1 -1.2443 -5.3212 0.3451 38 1 2.2584 -1.3871 -2.7298 39 1 1.9691 -3.2033 -2.8664 40 1 -0.3682 -2.9022 -1.9282 41 1 -0.0793 -1.0857 -1.7916 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000744278913.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:59:38 Heat of formation + Delta-G solvation = -34.173677 kcal Electronic energy + Delta-G solvation = -24420.718142 eV Core-core repulsion = 20971.517655 eV Total energy + Delta-G solvation = -3449.200488 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 318.108 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.66775 -39.04306 -37.24053 -35.85861 -35.25309 -31.88874 -31.35923 -30.91886 -28.43980 -26.82931 -24.86788 -23.37416 -22.91770 -21.96219 -21.27520 -19.94793 -19.44445 -17.90650 -17.46839 -17.10483 -16.30145 -16.05316 -15.68393 -15.43193 -15.00995 -14.21121 -13.95019 -13.82015 -13.74743 -13.48432 -13.28340 -13.05238 -12.92625 -12.59404 -12.29074 -12.10613 -11.87487 -11.59550 -11.51395 -10.99302 -10.86668 -10.82958 -10.42641 -10.42132 -10.19297 -10.17576 -10.06723 -9.86022 -9.72096 -8.92817 -8.85171 -8.72213 -7.89853 -7.56085 -6.59464 -4.03315 1.01738 1.17145 1.39961 2.16513 2.47217 2.99535 3.38562 3.42208 3.57005 3.59996 4.24373 4.43989 4.46059 4.54687 4.75002 4.82425 4.89496 5.01189 5.07247 5.21738 5.22660 5.29663 5.38833 5.45675 5.57518 5.61750 5.69917 5.80373 5.88108 5.89350 6.02111 6.08461 6.23603 6.26944 6.37673 6.47147 6.60764 6.73276 6.79201 6.95431 7.15449 7.35572 8.15945 8.22571 8.45047 8.78845 9.53052 10.75285 Molecular weight = 318.11amu Principal moments of inertia in cm(-1) A = 0.017474 B = 0.003752 C = 0.003434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1602.025145 B = 7460.255000 C = 8150.956578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.859 5.859 2 C 0.048 3.952 3 Si 1.047 2.953 4 H -0.285 1.285 5 H -0.287 1.287 6 H -0.286 1.286 7 C -0.605 4.605 8 H 0.058 0.942 9 C 0.025 3.975 10 C 0.113 3.887 11 O -0.325 6.325 12 C 0.465 3.535 13 O -0.513 6.513 14 C -0.046 4.046 15 H 0.117 0.883 16 C -0.113 4.113 17 C -0.101 4.101 18 S -0.124 6.124 19 C -0.066 4.066 20 C -0.102 4.102 21 C -0.103 4.103 22 C -0.115 4.115 23 C -0.101 4.101 24 C -0.070 4.070 25 C -0.200 4.200 26 C -0.199 4.199 27 H 0.285 0.715 28 H 0.044 0.956 29 H 0.062 0.938 30 H 0.093 0.907 31 H 0.094 0.906 32 H 0.119 0.881 33 H 0.098 0.902 34 H 0.129 0.871 35 H 0.130 0.870 36 H 0.128 0.872 37 H 0.125 0.875 38 H 0.086 0.914 39 H 0.063 0.937 40 H 0.063 0.937 41 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.042 -13.060 6.704 15.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.490 5.490 2 C -0.163 4.163 3 Si 0.875 3.125 4 H -0.212 1.212 5 H -0.213 1.213 6 H -0.212 1.212 7 C -0.640 4.640 8 H 0.077 0.923 9 C 0.024 3.976 10 C 0.040 3.960 11 O -0.240 6.240 12 C 0.307 3.693 13 O -0.403 6.403 14 C -0.065 4.065 15 H 0.135 0.865 16 C -0.152 4.152 17 C -0.249 4.249 18 S 0.118 5.882 19 C -0.178 4.178 20 C -0.125 4.125 21 C -0.123 4.123 22 C -0.135 4.135 23 C -0.120 4.120 24 C -0.076 4.076 25 C -0.238 4.238 26 C -0.236 4.236 27 H 0.098 0.902 28 H 0.062 0.938 29 H 0.081 0.919 30 H 0.112 0.888 31 H 0.112 0.888 32 H 0.137 0.863 33 H 0.117 0.883 34 H 0.147 0.853 35 H 0.148 0.852 36 H 0.146 0.854 37 H 0.143 0.857 38 H 0.104 0.896 39 H 0.081 0.919 40 H 0.081 0.919 41 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -6.216 -12.479 7.577 15.867 hybrid contribution 0.646 -0.708 -1.267 1.589 sum -5.570 -13.187 6.310 15.644 Atomic orbital electron populations 1.70819 1.07925 1.32748 1.37542 1.25676 0.95465 1.02286 0.92884 0.83907 0.75821 0.75713 0.77107 1.21179 1.21274 1.21226 1.20874 1.14848 0.96120 1.32165 0.92346 1.18957 0.98867 0.91722 0.88011 1.22788 0.91278 0.98097 0.83884 1.86657 1.59619 1.36841 1.40835 1.23113 0.83291 0.80435 0.82448 1.90617 1.38570 1.42824 1.68258 1.19602 0.93338 1.00505 0.93052 0.86487 1.21579 0.97517 1.04968 0.91139 1.23795 1.00316 0.98377 1.02375 1.85381 1.67534 1.30089 1.05207 1.21219 1.00511 0.99441 0.96654 1.20854 0.96772 0.98897 0.95937 1.21055 0.99585 0.98528 0.93118 1.21070 0.96660 0.95613 1.00189 1.21381 0.97467 0.98966 0.94234 1.19019 0.97427 0.96948 0.94192 1.23240 1.00497 1.00549 0.99545 1.23341 0.90442 1.02605 1.07180 0.90208 0.93759 0.91925 0.88832 0.88769 0.86288 0.88340 0.85342 0.85242 0.85433 0.85679 0.89578 0.91892 0.91873 0.87408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.05 12.24 55.43 0.68 -23.37 16 2 C 0.05 1.31 4.79 -17.82 -0.09 1.22 16 3 Si 1.05 23.91 30.04 -169.99 -5.11 18.80 16 4 H -0.29 -6.32 7.11 56.52 0.40 -5.92 16 5 H -0.29 -6.55 7.11 56.52 0.40 -6.14 16 6 H -0.29 -6.33 7.11 56.52 0.40 -5.93 16 7 C -0.61 -16.45 8.77 -34.44 -0.30 -16.75 16 8 H 0.06 1.64 8.05 -52.49 -0.42 1.22 16 9 C 0.03 0.62 2.15 -155.66 -0.33 0.28 16 10 C 0.11 2.49 5.35 37.16 0.20 2.69 16 11 O -0.32 -7.00 9.92 -39.26 -0.39 -7.39 16 12 C 0.46 8.72 4.95 36.01 0.18 8.90 16 13 O -0.51 -10.58 16.32 -18.75 -0.31 -10.89 16 14 C -0.05 -0.69 2.38 -93.82 -0.22 -0.91 16 15 H 0.12 1.70 8.13 -51.93 -0.42 1.28 16 16 C -0.11 -1.41 4.87 -27.03 -0.13 -1.54 16 17 C -0.10 -1.00 6.53 37.44 0.24 -0.76 16 18 S -0.12 -1.42 21.99 -107.50 -2.36 -3.79 16 19 C -0.07 -0.87 6.05 -39.08 -0.24 -1.11 16 20 C -0.10 -1.18 9.65 -39.24 -0.38 -1.56 16 21 C -0.10 -1.12 10.06 -39.73 -0.40 -1.52 16 22 C -0.12 -1.42 10.03 -39.72 -0.40 -1.82 16 23 C -0.10 -1.50 8.94 -39.35 -0.35 -1.85 16 24 C -0.07 -1.03 5.52 -104.56 -0.58 -1.60 16 25 C -0.20 -4.42 9.92 -26.73 -0.27 -4.69 16 26 C -0.20 -4.61 8.37 -26.74 -0.22 -4.83 16 27 H 0.29 8.00 6.47 -40.82 -0.26 7.73 16 28 H 0.04 0.91 8.09 -51.93 -0.42 0.49 16 29 H 0.06 1.40 8.02 -51.93 -0.42 0.98 16 30 H 0.09 1.27 7.84 -51.93 -0.41 0.86 16 31 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 32 H 0.12 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.10 0.92 8.08 -51.92 -0.42 0.50 16 34 H 0.13 1.22 8.05 -52.49 -0.42 0.80 16 35 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 36 H 0.13 1.30 8.06 -52.48 -0.42 0.88 16 37 H 0.13 2.02 6.69 -52.49 -0.35 1.67 16 38 H 0.09 1.93 8.14 -51.93 -0.42 1.51 16 39 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 40 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 41 H 0.11 2.74 5.63 -51.93 -0.29 2.45 16 LS Contribution 352.03 15.07 5.31 5.31 Total: -1.00 -30.25 352.03 -11.06 -41.31 By element: Atomic # 1 Polarization: 11.45 SS G_CDS: -5.59 Total: 5.86 kcal Atomic # 6 Polarization: -22.55 SS G_CDS: -3.29 Total: -25.84 kcal Atomic # 7 Polarization: -24.05 SS G_CDS: 0.68 Total: -23.37 kcal Atomic # 8 Polarization: -17.58 SS G_CDS: -0.70 Total: -18.28 kcal Atomic # 14 Polarization: 23.91 SS G_CDS: -5.11 Total: 18.80 kcal Atomic # 16 Polarization: -1.42 SS G_CDS: -2.36 Total: -3.79 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -30.25 -11.06 -41.31 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000744278913.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.136 kcal (2) G-P(sol) polarization free energy of solvation -30.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds