Wall clock time and date at job start Tue Mar 31 2020 11:59:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86794 * 120.00433 * 2 1 4 4 H 1.48498 * 109.47123 * 264.65600 * 3 2 1 5 5 H 1.48500 * 109.46998 * 24.65114 * 3 2 1 6 6 H 1.48499 * 109.47525 * 144.65205 * 3 2 1 7 7 C 1.37880 * 119.99668 * 179.72154 * 2 1 3 8 8 H 1.07996 * 120.00352 * 220.29886 * 7 2 1 9 9 C 1.50702 * 120.00001 * 40.30252 * 7 2 1 10 10 C 1.52997 * 115.54938 * 220.47654 * 9 7 2 11 11 O 1.45201 * 109.47159 * 66.13220 * 10 9 7 12 12 C 1.34231 * 116.99873 * 182.76663 * 11 10 9 13 13 O 1.20824 * 120.00045 * 5.52403 * 12 11 10 14 14 C 1.50707 * 119.99769 * 185.52948 * 12 11 10 15 15 H 1.08998 * 108.61071 * 349.08627 * 14 12 11 16 16 C 1.51868 * 108.65316 * 231.05444 * 14 12 11 17 17 C 1.53539 * 108.96699 * 178.63652 * 16 14 12 18 18 S 1.81611 * 107.27982 * 72.69636 * 17 16 14 19 19 C 1.76457 * 102.61035 * 313.58263 * 18 17 16 20 20 C 1.39634 * 117.71831 * 192.80569 * 19 18 17 21 21 C 1.37740 * 120.62980 * 180.50018 * 20 19 18 22 22 C 1.38338 * 119.50605 * 0.07154 * 21 20 19 23 23 C 1.37765 * 120.01400 * 359.67148 * 22 21 20 24 24 C 1.38185 * 122.30270 * 12.89525 * 19 18 17 25 25 C 1.53001 * 117.50068 * 74.76661 * 9 7 2 26 26 C 1.52994 * 59.99972 * 252.51145 * 25 9 7 27 27 H 0.96996 * 119.99802 * 176.70699 * 1 2 3 28 28 H 1.08999 * 109.47203 * 186.13461 * 10 9 7 29 29 H 1.08995 * 109.47185 * 306.13046 * 10 9 7 30 30 H 1.09000 * 109.55925 * 298.47749 * 16 14 12 31 31 H 1.09000 * 109.55906 * 58.79035 * 16 14 12 32 32 H 1.08997 * 109.89474 * 192.14573 * 17 16 14 33 33 H 1.09008 * 109.89149 * 313.25806 * 17 16 14 34 34 H 1.07995 * 119.68331 * 0.48109 * 20 19 18 35 35 H 1.08002 * 120.24619 * 180.09510 * 21 20 19 36 36 H 1.08003 * 119.99462 * 179.69949 * 22 21 20 37 37 H 1.07997 * 119.46749 * 180.02562 * 23 22 21 38 38 H 1.09006 * 117.49911 * 0.02562 * 25 9 7 39 39 H 1.09001 * 117.49859 * 145.01852 * 25 9 7 40 40 H 1.09000 * 117.49800 * 252.51085 * 26 25 9 41 41 H 1.09002 * 117.49729 * 107.49096 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.6097 1.9811 -1.3940 5 1 1.3948 2.6826 0.5840 6 1 3.4857 1.4753 0.8100 7 6 2.0045 -1.1941 0.0058 8 1 2.8922 -1.3023 0.6112 9 6 1.5192 -2.3484 -0.8328 10 6 1.6061 -3.7259 -0.1728 11 8 0.6927 -3.7810 0.9546 12 6 0.6889 -4.9096 1.6812 13 8 1.4924 -5.7812 1.4477 14 6 -0.3178 -5.0897 2.7882 15 1 -0.8131 -4.1353 2.9666 16 6 0.4180 -5.4989 4.0521 17 6 -0.5975 -5.6511 5.1936 18 16 -1.5420 -7.1695 4.8765 19 6 -1.9468 -7.0211 3.1654 20 6 -2.9081 -7.8914 2.6476 21 6 -3.2623 -7.8349 1.3177 22 6 -2.6564 -6.9065 0.4901 23 6 -1.7114 -6.0428 0.9990 24 6 -1.3474 -6.0861 2.3432 25 6 1.7531 -2.2720 -2.3429 26 6 0.3433 -2.0904 -1.7770 27 1 -0.4849 -0.8386 -0.0483 28 1 1.3355 -4.4938 -0.8975 29 1 2.6244 -3.8982 0.1759 30 1 0.9263 -6.4489 3.8871 31 1 1.1484 -4.7331 4.3133 32 1 -0.0748 -5.7316 6.1467 33 1 -1.2693 -4.7928 5.2093 34 1 -3.3782 -8.6160 3.2959 35 1 -4.0076 -8.5100 0.9240 36 1 -2.9246 -6.8585 -0.5550 37 1 -1.2443 -5.3212 0.3451 38 1 2.2584 -1.3871 -2.7298 39 1 1.9691 -3.2033 -2.8664 40 1 -0.3682 -2.9022 -1.9282 41 1 -0.0793 -1.0857 -1.7916 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000744278913.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:59:37 Heat of formation + Delta-G solvation = -47.266693 kcal Electronic energy + Delta-G solvation = -24421.285898 eV Core-core repulsion = 20971.517655 eV Total energy + Delta-G solvation = -3449.768243 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 318.108 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.07670 -40.22686 -38.98404 -37.38167 -36.53907 -33.92335 -32.34013 -31.85836 -29.77144 -28.37574 -26.85636 -24.33769 -23.93630 -23.29481 -23.01099 -21.37229 -21.21115 -19.07778 -18.97742 -18.83127 -17.57061 -17.52626 -16.70727 -16.66798 -16.23708 -15.76550 -15.60685 -15.27518 -14.88430 -14.80401 -14.37487 -14.32316 -14.07254 -13.84909 -13.81177 -13.69654 -13.39261 -12.88242 -12.70231 -12.60738 -12.45190 -12.24389 -11.99051 -11.95478 -11.84641 -11.80109 -11.57739 -11.16201 -10.80562 -10.74042 -10.59898 -9.96216 -9.91585 -8.72399 -8.45893 -6.15852 0.03729 0.18405 0.51711 0.97933 1.27021 1.53800 1.55340 1.58544 1.80596 2.53546 2.57354 2.84659 3.13795 3.34793 3.43626 3.58516 3.77353 3.86374 3.92440 3.96305 4.04070 4.06531 4.19873 4.27350 4.31819 4.37648 4.43201 4.52486 4.57736 4.64178 4.69893 4.81574 4.84417 4.88051 4.94504 5.12265 5.19109 5.28837 5.41580 5.45994 5.48822 5.81280 6.14131 6.27354 6.60075 6.68861 7.45129 8.61670 Molecular weight = 318.11amu Principal moments of inertia in cm(-1) A = 0.017474 B = 0.003752 C = 0.003434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1602.025145 B = 7460.255000 C = 8150.956578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.009 3.991 3 Si 1.093 2.907 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.277 1.277 7 C -0.625 4.625 8 H 0.039 0.961 9 C -0.002 4.002 10 C 0.119 3.881 11 O -0.344 6.344 12 C 0.467 3.533 13 O -0.535 6.535 14 C -0.039 4.039 15 H 0.115 0.885 16 C -0.110 4.110 17 C -0.094 4.094 18 S -0.116 6.116 19 C -0.080 4.080 20 C -0.104 4.104 21 C -0.093 4.093 22 C -0.120 4.120 23 C -0.129 4.129 24 C -0.091 4.091 25 C -0.180 4.180 26 C -0.195 4.195 27 H 0.275 0.725 28 H 0.058 0.942 29 H 0.052 0.948 30 H 0.082 0.918 31 H 0.099 0.901 32 H 0.148 0.852 33 H 0.107 0.893 34 H 0.153 0.847 35 H 0.167 0.833 36 H 0.146 0.854 37 H 0.100 0.900 38 H 0.081 0.919 39 H 0.094 0.906 40 H 0.080 0.920 41 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.853 -14.207 7.179 17.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.509 5.509 2 C -0.198 4.198 3 Si 0.916 3.084 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.202 1.202 7 C -0.660 4.660 8 H 0.057 0.943 9 C -0.003 4.003 10 C 0.046 3.954 11 O -0.260 6.260 12 C 0.311 3.689 13 O -0.426 6.426 14 C -0.059 4.059 15 H 0.133 0.867 16 C -0.149 4.149 17 C -0.242 4.242 18 S 0.127 5.873 19 C -0.192 4.192 20 C -0.126 4.126 21 C -0.113 4.113 22 C -0.140 4.140 23 C -0.148 4.148 24 C -0.097 4.097 25 C -0.218 4.218 26 C -0.232 4.232 27 H 0.086 0.914 28 H 0.077 0.923 29 H 0.070 0.930 30 H 0.100 0.900 31 H 0.117 0.883 32 H 0.166 0.834 33 H 0.125 0.875 34 H 0.171 0.829 35 H 0.184 0.816 36 H 0.163 0.837 37 H 0.119 0.881 38 H 0.100 0.900 39 H 0.112 0.888 40 H 0.098 0.902 41 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -7.027 -13.642 8.053 17.330 hybrid contribution 0.873 -0.447 -1.410 1.717 sum -6.154 -14.089 6.643 16.748 Atomic orbital electron populations 1.70928 1.08484 1.32097 1.39436 1.26856 0.95564 1.05265 0.92091 0.83289 0.74944 0.72283 0.77919 1.19732 1.21113 1.20182 1.21030 1.14190 0.97824 1.32923 0.94316 1.19079 1.00186 0.92023 0.89027 1.22589 0.91003 0.97359 0.84475 1.86661 1.59616 1.38555 1.41131 1.23856 0.83415 0.79168 0.82439 1.90586 1.39734 1.43218 1.69038 1.19708 0.92690 1.01028 0.92431 0.86698 1.21579 0.98067 1.04385 0.90890 1.23871 0.99782 0.98151 1.02397 1.85301 1.67500 1.30823 1.03711 1.21491 1.00805 0.99219 0.97681 1.21264 0.96033 0.98623 0.96729 1.21479 0.99274 0.97913 0.92590 1.21351 0.95917 0.95260 1.01452 1.21384 0.99125 0.99939 0.94386 1.19019 0.98148 0.97953 0.94609 1.23224 0.99074 1.01766 0.97729 1.23203 0.91086 1.01939 1.07021 0.91367 0.92331 0.92961 0.89951 0.88292 0.83375 0.87473 0.82919 0.81551 0.83655 0.88138 0.90032 0.88806 0.90167 0.89665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -50.11 12.24 21.45 0.26 -49.85 16 2 C 0.01 0.51 4.79 84.66 0.41 0.92 16 3 Si 1.09 48.43 30.04 68.60 2.06 50.49 16 4 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 5 H -0.29 -12.51 7.11 99.48 0.71 -11.80 16 6 H -0.28 -11.71 7.11 99.48 0.71 -11.00 16 7 C -0.62 -34.72 8.77 25.60 0.22 -34.50 16 8 H 0.04 2.25 8.05 -2.91 -0.02 2.22 16 9 C 0.00 -0.11 2.15 -52.93 -0.11 -0.23 16 10 C 0.12 5.39 5.35 71.98 0.39 5.78 16 11 O -0.34 -15.46 9.92 -51.43 -0.51 -15.97 16 12 C 0.47 18.20 4.95 71.24 0.35 18.56 16 13 O -0.54 -22.78 16.32 21.97 0.36 -22.42 16 14 C -0.04 -1.21 2.38 -12.87 -0.03 -1.24 16 15 H 0.12 3.48 8.13 -2.39 -0.02 3.46 16 16 C -0.11 -2.72 4.87 30.40 0.15 -2.57 16 17 C -0.09 -1.72 6.53 72.16 0.47 -1.25 16 18 S -0.12 -2.43 21.99 -56.49 -1.24 -3.68 16 19 C -0.08 -2.01 6.05 22.59 0.14 -1.87 16 20 C -0.10 -2.16 9.65 22.49 0.22 -1.94 16 21 C -0.09 -1.77 10.06 22.18 0.22 -1.55 16 22 C -0.12 -2.82 10.03 22.18 0.22 -2.60 16 23 C -0.13 -3.90 8.94 22.42 0.20 -3.70 16 24 C -0.09 -2.69 5.52 -19.82 -0.11 -2.80 16 25 C -0.18 -7.81 9.92 30.59 0.30 -7.51 16 26 C -0.20 -9.12 8.37 30.59 0.26 -8.86 16 27 H 0.27 15.90 6.47 -92.71 -0.60 15.30 16 28 H 0.06 2.43 8.09 -2.39 -0.02 2.41 16 29 H 0.05 2.41 8.02 -2.39 -0.02 2.40 16 30 H 0.08 2.22 7.84 -2.39 -0.02 2.21 16 31 H 0.10 2.30 8.14 -2.39 -0.02 2.29 16 32 H 0.15 1.85 8.14 -2.39 -0.02 1.84 16 33 H 0.11 1.82 8.08 -2.38 -0.02 1.80 16 34 H 0.15 2.39 8.05 -2.91 -0.02 2.36 16 35 H 0.17 1.89 8.06 -2.91 -0.02 1.86 16 36 H 0.15 2.77 8.06 -2.91 -0.02 2.75 16 37 H 0.10 3.45 6.69 -2.91 -0.02 3.43 16 38 H 0.08 3.59 8.14 -2.38 -0.02 3.57 16 39 H 0.09 3.48 8.14 -2.39 -0.02 3.46 16 40 H 0.08 3.40 8.14 -2.39 -0.02 3.38 16 41 H 0.09 4.41 5.63 -2.39 -0.01 4.40 16 Total: -1.00 -66.56 352.03 5.42 -61.14 By element: Atomic # 1 Polarization: 24.44 SS G_CDS: 1.20 Total: 25.64 kcal Atomic # 6 Polarization: -48.65 SS G_CDS: 3.29 Total: -45.36 kcal Atomic # 7 Polarization: -50.11 SS G_CDS: 0.26 Total: -49.85 kcal Atomic # 8 Polarization: -38.24 SS G_CDS: -0.15 Total: -38.39 kcal Atomic # 14 Polarization: 48.43 SS G_CDS: 2.06 Total: 50.49 kcal Atomic # 16 Polarization: -2.43 SS G_CDS: -1.24 Total: -3.68 kcal Total: -66.56 5.42 -61.14 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000744278913.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.873 kcal (2) G-P(sol) polarization free energy of solvation -66.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds