Wall clock time and date at job start Tue Mar 31 2020 11:46:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.36005 * 116.99661 * 2 1 4 4 C 1.38715 * 119.98115 * 0.02562 * 3 2 1 5 5 C 1.38096 * 120.01893 * 179.97438 * 4 3 2 6 6 C 1.38888 * 119.97716 * 0.02562 * 5 4 3 7 7 N 1.39935 * 120.01672 * 180.02562 * 6 5 4 8 8 C 1.46503 * 120.00203 * 0.02562 * 7 6 5 9 9 C 1.50697 * 109.47378 * 179.97438 * 8 7 6 10 10 O 1.21290 * 119.99761 * 359.97438 * 9 8 7 11 11 N 1.34781 * 120.00037 * 179.97438 * 9 8 7 12 12 C 1.37091 * 119.99864 * 180.02562 * 11 9 8 13 13 H 1.07998 * 119.99960 * 359.97438 * 12 11 9 14 14 C 1.38949 * 120.00136 * 180.02562 * 12 11 9 15 15 N 1.31408 * 120.00461 * 179.97438 * 14 12 11 16 16 Si 1.86803 * 119.99761 * 359.97438 * 14 12 11 17 17 H 1.48502 * 109.46925 * 90.00136 * 16 14 12 18 18 H 1.48499 * 109.47025 * 210.00466 * 16 14 12 19 19 H 1.48505 * 109.47220 * 330.00334 * 16 14 12 20 20 C 1.38841 * 119.96195 * 359.97438 * 6 5 4 21 21 C 1.50696 * 120.00453 * 180.02562 * 20 6 5 22 22 F 1.39902 * 109.46745 * 179.97438 * 21 20 6 23 23 F 1.39893 * 109.47700 * 299.99821 * 21 20 6 24 24 F 1.39900 * 109.47221 * 60.00549 * 21 20 6 25 25 C 1.38127 * 119.97967 * 359.74390 * 20 6 5 26 26 H 1.09005 * 109.47329 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47352 * 299.99796 * 1 2 3 28 28 H 1.08999 * 109.47144 * 59.99821 * 1 2 3 29 29 H 1.08000 * 119.99488 * 359.97438 * 4 3 2 30 30 H 1.07992 * 120.01142 * 180.02562 * 5 4 3 31 31 H 0.96997 * 120.00158 * 179.97438 * 7 6 5 32 32 H 1.09007 * 109.46962 * 299.99935 * 8 7 6 33 33 H 1.09001 * 109.47172 * 59.99620 * 8 7 6 34 34 H 0.97001 * 119.99768 * 359.97438 * 11 9 8 35 35 H 0.96996 * 120.00219 * 179.97438 * 15 14 12 36 36 H 1.08003 * 119.99012 * 180.25576 * 25 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2904 2.3749 0.0005 5 6 1.9165 3.6058 0.0011 6 6 3.3035 3.6789 0.0005 7 7 3.9387 4.9258 0.0016 8 6 3.1408 6.1545 0.0039 9 6 4.0587 7.3496 0.0053 10 8 5.2612 7.1907 0.0050 11 7 3.5435 8.5951 0.0069 12 6 4.3786 9.6823 0.0077 13 1 5.4493 9.5408 0.0074 14 6 3.8476 10.9663 0.0099 15 7 4.6480 12.0084 0.0112 16 14 1.9956 11.2110 0.0112 17 1 1.5056 11.2737 1.4116 18 1 1.6634 12.4789 -0.6869 19 1 1.3457 10.0748 -0.6903 20 6 4.0592 2.5143 0.0000 21 6 5.5642 2.5925 0.0000 22 9 6.0983 1.2994 0.0000 23 9 5.9957 3.2757 -1.1419 24 9 5.9957 3.2747 1.1426 25 6 3.4313 1.2840 0.0053 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 0.2120 2.3179 0.0005 30 1 1.3279 4.5112 0.0019 31 1 4.9073 4.9766 0.0016 32 1 2.5112 6.1805 -0.8856 33 1 2.5127 6.1782 0.8944 34 1 2.5819 8.7221 0.0068 35 1 4.2772 12.9047 0.0123 36 1 4.0191 0.3779 0.0091 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000749879104.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:46:11 Heat of formation + Delta-G solvation = -188.046908 kcal Electronic energy + Delta-G solvation = -26525.208192 eV Core-core repulsion = 21981.185306 eV Total energy + Delta-G solvation = -4544.022886 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.098 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -50.08566 -47.61779 -47.49178 -40.40824 -38.90395 -37.95889 -34.93218 -34.01898 -32.08865 -31.84232 -29.94732 -27.88370 -26.57736 -25.80905 -24.42436 -22.27327 -21.61983 -19.67805 -19.06701 -18.70582 -18.36490 -18.31810 -17.35613 -16.72583 -16.26242 -15.91084 -15.56802 -15.31561 -15.07743 -14.77297 -14.51403 -14.41024 -14.06080 -13.95772 -13.67648 -13.67159 -13.58121 -13.32598 -13.17322 -13.02387 -12.73913 -12.56341 -12.45062 -12.18783 -11.86357 -11.51042 -11.27427 -11.06301 -10.70567 -10.10389 -9.76965 -9.69916 -9.43684 -8.82762 -8.35440 -7.33258 -6.44366 -3.97332 0.80359 1.37970 2.66510 2.92510 2.97521 3.06637 3.12278 3.29360 3.39228 3.49980 3.84723 3.98409 4.11041 4.43185 4.50447 4.56265 4.72608 4.81565 4.89449 5.06552 5.08419 5.19718 5.20177 5.37574 5.55069 5.61513 5.67308 5.69974 5.91337 6.09177 6.23351 7.01240 7.22189 7.41642 7.68547 7.97834 8.40630 8.78100 9.24833 9.58385 10.67934 Molecular weight = 318.10amu Principal moments of inertia in cm(-1) A = 0.016409 B = 0.003468 C = 0.002918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1705.965136 B = 8072.101415 C = 9592.968479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.319 6.319 3 C 0.055 3.945 4 C -0.120 4.120 5 C -0.166 4.166 6 C 0.247 3.753 7 N -0.719 5.719 8 C 0.107 3.893 9 C 0.437 3.563 10 O -0.572 6.572 11 N -0.576 5.576 12 C -0.310 4.310 13 H 0.122 0.878 14 C 0.045 3.955 15 N -0.873 5.873 16 Si 0.881 3.119 17 H -0.269 1.269 18 H -0.275 1.275 19 H -0.268 1.268 20 C -0.234 4.234 21 C 0.513 3.487 22 F -0.179 7.179 23 F -0.174 7.174 24 F -0.174 7.174 25 C -0.053 4.053 26 H 0.097 0.903 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.134 0.866 30 H 0.138 0.862 31 H 0.414 0.586 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.373 0.627 35 H 0.276 0.724 36 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.276 -21.454 0.000 24.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.233 6.233 3 C 0.009 3.991 4 C -0.140 4.140 5 C -0.189 4.189 6 C 0.139 3.861 7 N -0.349 5.349 8 C -0.021 4.021 9 C 0.222 3.778 10 O -0.455 6.455 11 N -0.214 5.214 12 C -0.439 4.439 13 H 0.139 0.861 14 C -0.159 4.159 15 N -0.512 5.512 16 Si 0.707 3.293 17 H -0.194 1.194 18 H -0.200 1.200 19 H -0.194 1.194 20 C -0.241 4.241 21 C 0.459 3.541 22 F -0.160 7.160 23 F -0.155 7.155 24 F -0.155 7.155 25 C -0.072 4.072 26 H 0.116 0.884 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.152 0.848 30 H 0.155 0.845 31 H 0.255 0.745 32 H 0.100 0.900 33 H 0.100 0.900 34 H 0.206 0.794 35 H 0.087 0.913 36 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -10.398 -21.261 0.001 23.667 hybrid contribution -1.126 0.684 -0.016 1.318 sum -11.524 -20.576 -0.015 23.584 Atomic orbital electron populations 1.23006 0.78714 1.03752 1.01164 1.86057 1.20943 1.26327 1.90014 1.18426 0.91500 0.84421 1.04784 1.21199 1.00092 0.91602 1.01067 1.20484 0.91606 0.98332 1.08485 1.17405 0.91940 0.84417 0.92329 1.44776 1.10092 1.01203 1.78878 1.21065 0.94146 0.84500 1.02392 1.19548 0.89079 0.83809 0.85336 1.90579 1.15012 1.84848 1.55060 1.42102 1.08118 1.05544 1.65637 1.19449 0.93260 0.82517 1.48674 0.86068 1.25071 0.98575 0.95099 0.97179 1.69614 1.35022 0.98535 1.48043 0.86658 0.84769 0.78864 0.79045 1.19409 1.19958 1.19365 1.19065 0.90400 0.94076 1.20577 1.18102 0.88366 0.73571 0.74076 1.93141 1.88168 1.38442 1.96293 1.93244 1.91390 1.79854 1.50996 1.93246 1.91393 1.79916 1.50944 1.19818 0.92018 0.96502 0.98897 0.88438 0.92820 0.92825 0.84796 0.84461 0.74539 0.90021 0.90019 0.79365 0.91338 0.83920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 9.81 101.05 0.99 1.16 16 2 O -0.32 -3.21 10.50 -19.76 -0.21 -3.41 16 3 C 0.05 0.60 6.69 -39.24 -0.26 0.34 16 4 C -0.12 -1.18 9.03 -39.46 -0.36 -1.53 16 5 C -0.17 -1.86 9.31 -39.39 -0.37 -2.23 16 6 C 0.25 3.42 6.55 -83.69 -0.55 2.87 16 7 N -0.72 -11.58 5.46 -59.76 -0.33 -11.91 16 8 C 0.11 1.67 5.39 -5.19 -0.03 1.64 16 9 C 0.44 9.46 7.85 -10.98 -0.09 9.38 16 10 O -0.57 -14.87 15.24 5.55 0.08 -14.79 16 11 N -0.58 -13.01 5.09 -10.97 -0.06 -13.06 16 12 C -0.31 -8.48 10.16 -14.94 -0.15 -8.63 16 13 H 0.12 3.82 7.39 -52.49 -0.39 3.43 16 14 C 0.05 1.19 5.50 -17.47 -0.10 1.10 16 15 N -0.87 -24.77 13.96 55.50 0.77 -24.00 16 16 Si 0.88 18.40 27.74 -169.99 -4.71 13.69 16 17 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 18 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 19 H -0.27 -5.02 6.52 56.52 0.37 -4.65 16 20 C -0.23 -3.18 5.38 -104.44 -0.56 -3.74 16 21 C 0.51 7.45 2.80 36.00 0.10 7.55 16 22 F -0.18 -2.37 15.97 2.25 0.04 -2.34 16 23 F -0.17 -2.75 16.24 2.25 0.04 -2.72 16 24 F -0.17 -2.76 16.24 2.25 0.04 -2.72 16 25 C -0.05 -0.64 9.36 -39.46 -0.37 -1.00 16 26 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.05 0.27 7.66 -51.93 -0.40 -0.13 16 28 H 0.05 0.27 7.66 -51.93 -0.40 -0.13 16 29 H 0.13 0.92 6.29 -52.49 -0.33 0.59 16 30 H 0.14 1.28 6.73 -52.49 -0.35 0.93 16 31 H 0.41 7.63 4.86 -40.82 -0.20 7.43 16 32 H 0.08 1.07 7.95 -51.93 -0.41 0.66 16 33 H 0.08 1.06 7.95 -51.93 -0.41 0.65 16 34 H 0.37 7.20 5.76 -40.82 -0.24 6.97 16 35 H 0.28 7.20 8.31 -40.82 -0.34 6.86 16 36 H 0.14 1.53 7.15 -52.48 -0.38 1.16 16 LS Contribution 320.86 15.07 4.84 4.84 Total: -1.00 -31.94 320.86 -4.33 -36.27 By element: Atomic # 1 Polarization: 16.35 SS G_CDS: -3.09 Total: 13.26 kcal Atomic # 6 Polarization: 8.63 SS G_CDS: -1.74 Total: 6.90 kcal Atomic # 7 Polarization: -49.36 SS G_CDS: 0.39 Total: -48.97 kcal Atomic # 8 Polarization: -18.08 SS G_CDS: -0.12 Total: -18.20 kcal Atomic # 9 Polarization: -7.88 SS G_CDS: 0.11 Total: -7.78 kcal Atomic # 14 Polarization: 18.40 SS G_CDS: -4.71 Total: 13.69 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -31.94 -4.33 -36.27 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000749879104.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -151.781 kcal (2) G-P(sol) polarization free energy of solvation -31.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -183.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -188.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds